Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa
The model dicotyledon Arabidopsis thaliana has a characteristic small sub-family of phytochrome-interacting bHLH (basic Helix-Loop-Helix) factors, which are collectively designated the PIL (or PIF) (PHYTOCHROME INTERACTING FACTOR-LIKE) family proteins. In this study, we identified and characterized...
Gespeichert in:
| Veröffentlicht in: | Bioscience, biotechnology, and biochemistry biotechnology, and biochemistry, 2007-05, Vol.71 (5), p.1183-1191 |
|---|---|
| Hauptverfasser: | , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 1191 |
|---|---|
| container_issue | 5 |
| container_start_page | 1183 |
| container_title | Bioscience, biotechnology, and biochemistry |
| container_volume | 71 |
| creator | Nakamura, Y.(Nagoya Univ. (Japan). School of Agriculture) Kato, T Yamashino, T Murakami, M Mizuno, T |
| description | The model dicotyledon Arabidopsis thaliana has a characteristic small sub-family of phytochrome-interacting bHLH (basic Helix-Loop-Helix) factors, which are collectively designated the PIL (or PIF) (PHYTOCHROME INTERACTING FACTOR-LIKE) family proteins. In this study, we identified and characterized a set of highly homologous members (designated OsPIL11 to OsPIL16) in the model monocotyledon rice (Oryza sativa). Some of them (OsPIL11, OsPIL12, and OsPIL13) showed the ability to interact with the putative OsPRR1 (PSEUDO-RESPONSE REGULATOR 1) clock component, as far as the results of yeast two-hybrid assays were concerned. It was found that the expression of OsPIL13 is under the control of circadian rhythms (clock), while the expression of OsPIL15 is negatively regulated by light upon the onset to light exposure of etiolated seedlings. When the rice genes (OsPIL11 to OsPIL15) were over-expressed in A. thaliana, the resulting transgenic seedlings displayed anomalous morphologies with very long hypocotyls during early photomorphogenesis. These results suggest the view that the identified OsPILs are functional counterparts (or orthologs) of AtPILs, which are known to play important roles in red light-mediated (phyA and/or phyB-dependent) signal transduction pathways at immediate positions downstream of the photoreceptor in A. thaliana. |
| doi_str_mv | 10.1271/bbb.60643 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_pasca</sourceid><recordid>TN_cdi_pascalfrancis_primary_18879088</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3123347571</sourcerecordid><originalsourceid>FETCH-LOGICAL-c534t-fb1fa04fc496efb1668d878642e11fb68c89b3f63c583e45ee5fa38468aa7a2b3</originalsourceid><addsrcrecordid>eNpt0M-LEzEUB_AgiltXD_4ByoAoeJg1mfw-SlGrFNaDXg0vabLNOpPUZKp0_3qztrIgnl4SPu_l8UXoKcEXZJDkjbX2QmDB6D20IJTJXmgm76MF1kT0inFyhh7Veo1xe-DkITojkimuuF6gb8stFHCzL_EG5phTl0MHXfXz7WG3PczZbUuefB9TQ03GdNWFVnPpx_jdd3a1XnW7kmcfU-1i6i7L4aZNaNN-wmP0IMBY_ZNTPUdf37_7slz168sPH5dv173jlM19sCQAZsExLXy7CKE2SirBBk9IsEI5pS0NgjquqGfcex6AKiYUgITB0nP06ji3LfJj7-tsplidH0dIPu-rkZgPlErS4It_4HXel9R2M4QxrYjQQjf1-qhcybUWH8yuxAnKwRBsbiM3LXLzJ_Jmn58m7u3kN3fylHEDL08AqoMxFEgu1junlNRYqebY0cUUcpngVy7jxsxwGHP520T_9_-zY1uAbOCqNPXp84CxxFhQzOlvU7OjzA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1449816969</pqid></control><display><type>article</type><title>Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa</title><source>J-STAGE Free</source><source>MEDLINE</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Oxford University Press Journals All Titles (1996-Current)</source><source>Freely Accessible Japanese Titles</source><source>Free Full-Text Journals in Chemistry</source><creator>Nakamura, Y.(Nagoya Univ. (Japan). School of Agriculture) ; Kato, T ; Yamashino, T ; Murakami, M ; Mizuno, T</creator><creatorcontrib>Nakamura, Y.(Nagoya Univ. (Japan). School of Agriculture) ; Kato, T ; Yamashino, T ; Murakami, M ; Mizuno, T</creatorcontrib><description>The model dicotyledon Arabidopsis thaliana has a characteristic small sub-family of phytochrome-interacting bHLH (basic Helix-Loop-Helix) factors, which are collectively designated the PIL (or PIF) (PHYTOCHROME INTERACTING FACTOR-LIKE) family proteins. In this study, we identified and characterized a set of highly homologous members (designated OsPIL11 to OsPIL16) in the model monocotyledon rice (Oryza sativa). Some of them (OsPIL11, OsPIL12, and OsPIL13) showed the ability to interact with the putative OsPRR1 (PSEUDO-RESPONSE REGULATOR 1) clock component, as far as the results of yeast two-hybrid assays were concerned. It was found that the expression of OsPIL13 is under the control of circadian rhythms (clock), while the expression of OsPIL15 is negatively regulated by light upon the onset to light exposure of etiolated seedlings. When the rice genes (OsPIL11 to OsPIL15) were over-expressed in A. thaliana, the resulting transgenic seedlings displayed anomalous morphologies with very long hypocotyls during early photomorphogenesis. These results suggest the view that the identified OsPILs are functional counterparts (or orthologs) of AtPILs, which are known to play important roles in red light-mediated (phyA and/or phyB-dependent) signal transduction pathways at immediate positions downstream of the photoreceptor in A. thaliana.</description><identifier>ISSN: 0916-8451</identifier><identifier>EISSN: 1347-6947</identifier><identifier>DOI: 10.1271/bbb.60643</identifier><identifier>PMID: 17485859</identifier><language>eng</language><publisher>Tokyo: Japan Society for Bioscience, Biotechnology, and Agrochemistry</publisher><subject>ADN ; Amino Acid Motifs ; Amino Acid Sequence ; AMINO ACID SEQUENCES ; ARABIDOPSIS THALIANA ; basic helix-loop-helix ; Basic Helix-Loop-Helix Transcription Factors - metabolism ; Basic Helix-Loop-Helix Transcription Factors - radiation effects ; Biological and medical sciences ; BIOLOGICAL RHYTHMS ; circadian clock ; Circadian Rhythm - radiation effects ; Conserved Sequence ; DNA ; DNA, Complementary ; DNA, Plant - genetics ; FITOCROMA ; Fundamental and applied biological sciences. Psychology ; Gene Expression Regulation, Plant - radiation effects ; Genes, Plant ; LIGHT ; light signal transduction ; LUMIERE ; LUZ ; Molecular Sequence Data ; Oryza - chemistry ; Oryza - genetics ; ORYZA SATIVA ; Phylogeny ; PHYTOCHROME ; Phytochrome - metabolism ; Phytochrome - radiation effects ; Protein Structure, Tertiary ; PROTEINAS ; PROTEINE ; PROTEINS ; RITMOS BIOLOGICOS ; RYTHME BIOLOGIQUE ; SECUENCIAS DE AMINOACIDOS ; Sequence Analysis, Protein ; SEQUENCE D'ACIDES AMINES ; Sequence Homology, Amino Acid ; Signal Transduction - radiation effects ; Transcription, Genetic - radiation effects ; Two-Hybrid System Techniques</subject><ispartof>Bioscience, biotechnology, and biochemistry, 2007-05, Vol.71 (5), p.1183-1191</ispartof><rights>2007 by Japan Society for Bioscience, Biotechnology, and Agrochemistry 2007</rights><rights>2007 INIST-CNRS</rights><rights>Copyright Japan Science and Technology Agency 2007</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c534t-fb1fa04fc496efb1668d878642e11fb68c89b3f63c583e45ee5fa38468aa7a2b3</citedby><cites>FETCH-LOGICAL-c534t-fb1fa04fc496efb1668d878642e11fb68c89b3f63c583e45ee5fa38468aa7a2b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,778,782,27907,27908</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=18879088$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17485859$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nakamura, Y.(Nagoya Univ. (Japan). School of Agriculture)</creatorcontrib><creatorcontrib>Kato, T</creatorcontrib><creatorcontrib>Yamashino, T</creatorcontrib><creatorcontrib>Murakami, M</creatorcontrib><creatorcontrib>Mizuno, T</creatorcontrib><title>Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa</title><title>Bioscience, biotechnology, and biochemistry</title><addtitle>Biosci Biotechnol Biochem</addtitle><description>The model dicotyledon Arabidopsis thaliana has a characteristic small sub-family of phytochrome-interacting bHLH (basic Helix-Loop-Helix) factors, which are collectively designated the PIL (or PIF) (PHYTOCHROME INTERACTING FACTOR-LIKE) family proteins. In this study, we identified and characterized a set of highly homologous members (designated OsPIL11 to OsPIL16) in the model monocotyledon rice (Oryza sativa). Some of them (OsPIL11, OsPIL12, and OsPIL13) showed the ability to interact with the putative OsPRR1 (PSEUDO-RESPONSE REGULATOR 1) clock component, as far as the results of yeast two-hybrid assays were concerned. It was found that the expression of OsPIL13 is under the control of circadian rhythms (clock), while the expression of OsPIL15 is negatively regulated by light upon the onset to light exposure of etiolated seedlings. When the rice genes (OsPIL11 to OsPIL15) were over-expressed in A. thaliana, the resulting transgenic seedlings displayed anomalous morphologies with very long hypocotyls during early photomorphogenesis. These results suggest the view that the identified OsPILs are functional counterparts (or orthologs) of AtPILs, which are known to play important roles in red light-mediated (phyA and/or phyB-dependent) signal transduction pathways at immediate positions downstream of the photoreceptor in A. thaliana.</description><subject>ADN</subject><subject>Amino Acid Motifs</subject><subject>Amino Acid Sequence</subject><subject>AMINO ACID SEQUENCES</subject><subject>ARABIDOPSIS THALIANA</subject><subject>basic helix-loop-helix</subject><subject>Basic Helix-Loop-Helix Transcription Factors - metabolism</subject><subject>Basic Helix-Loop-Helix Transcription Factors - radiation effects</subject><subject>Biological and medical sciences</subject><subject>BIOLOGICAL RHYTHMS</subject><subject>circadian clock</subject><subject>Circadian Rhythm - radiation effects</subject><subject>Conserved Sequence</subject><subject>DNA</subject><subject>DNA, Complementary</subject><subject>DNA, Plant - genetics</subject><subject>FITOCROMA</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene Expression Regulation, Plant - radiation effects</subject><subject>Genes, Plant</subject><subject>LIGHT</subject><subject>light signal transduction</subject><subject>LUMIERE</subject><subject>LUZ</subject><subject>Molecular Sequence Data</subject><subject>Oryza - chemistry</subject><subject>Oryza - genetics</subject><subject>ORYZA SATIVA</subject><subject>Phylogeny</subject><subject>PHYTOCHROME</subject><subject>Phytochrome - metabolism</subject><subject>Phytochrome - radiation effects</subject><subject>Protein Structure, Tertiary</subject><subject>PROTEINAS</subject><subject>PROTEINE</subject><subject>PROTEINS</subject><subject>RITMOS BIOLOGICOS</subject><subject>RYTHME BIOLOGIQUE</subject><subject>SECUENCIAS DE AMINOACIDOS</subject><subject>Sequence Analysis, Protein</subject><subject>SEQUENCE D'ACIDES AMINES</subject><subject>Sequence Homology, Amino Acid</subject><subject>Signal Transduction - radiation effects</subject><subject>Transcription, Genetic - radiation effects</subject><subject>Two-Hybrid System Techniques</subject><issn>0916-8451</issn><issn>1347-6947</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpt0M-LEzEUB_AgiltXD_4ByoAoeJg1mfw-SlGrFNaDXg0vabLNOpPUZKp0_3qztrIgnl4SPu_l8UXoKcEXZJDkjbX2QmDB6D20IJTJXmgm76MF1kT0inFyhh7Veo1xe-DkITojkimuuF6gb8stFHCzL_EG5phTl0MHXfXz7WG3PczZbUuefB9TQ03GdNWFVnPpx_jdd3a1XnW7kmcfU-1i6i7L4aZNaNN-wmP0IMBY_ZNTPUdf37_7slz168sPH5dv173jlM19sCQAZsExLXy7CKE2SirBBk9IsEI5pS0NgjquqGfcex6AKiYUgITB0nP06ji3LfJj7-tsplidH0dIPu-rkZgPlErS4It_4HXel9R2M4QxrYjQQjf1-qhcybUWH8yuxAnKwRBsbiM3LXLzJ_Jmn58m7u3kN3fylHEDL08AqoMxFEgu1junlNRYqebY0cUUcpngVy7jxsxwGHP520T_9_-zY1uAbOCqNPXp84CxxFhQzOlvU7OjzA</recordid><startdate>20070501</startdate><enddate>20070501</enddate><creator>Nakamura, Y.(Nagoya Univ. (Japan). School of Agriculture)</creator><creator>Kato, T</creator><creator>Yamashino, T</creator><creator>Murakami, M</creator><creator>Mizuno, T</creator><general>Japan Society for Bioscience, Biotechnology, and Agrochemistry</general><general>Japan Society for Bioscience Biotechnology and Agrochemistry</general><general>Oxford University Press</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20070501</creationdate><title>Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa</title><author>Nakamura, Y.(Nagoya Univ. (Japan). School of Agriculture) ; Kato, T ; Yamashino, T ; Murakami, M ; Mizuno, T</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c534t-fb1fa04fc496efb1668d878642e11fb68c89b3f63c583e45ee5fa38468aa7a2b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>ADN</topic><topic>Amino Acid Motifs</topic><topic>Amino Acid Sequence</topic><topic>AMINO ACID SEQUENCES</topic><topic>ARABIDOPSIS THALIANA</topic><topic>basic helix-loop-helix</topic><topic>Basic Helix-Loop-Helix Transcription Factors - metabolism</topic><topic>Basic Helix-Loop-Helix Transcription Factors - radiation effects</topic><topic>Biological and medical sciences</topic><topic>BIOLOGICAL RHYTHMS</topic><topic>circadian clock</topic><topic>Circadian Rhythm - radiation effects</topic><topic>Conserved Sequence</topic><topic>DNA</topic><topic>DNA, Complementary</topic><topic>DNA, Plant - genetics</topic><topic>FITOCROMA</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene Expression Regulation, Plant - radiation effects</topic><topic>Genes, Plant</topic><topic>LIGHT</topic><topic>light signal transduction</topic><topic>LUMIERE</topic><topic>LUZ</topic><topic>Molecular Sequence Data</topic><topic>Oryza - chemistry</topic><topic>Oryza - genetics</topic><topic>ORYZA SATIVA</topic><topic>Phylogeny</topic><topic>PHYTOCHROME</topic><topic>Phytochrome - metabolism</topic><topic>Phytochrome - radiation effects</topic><topic>Protein Structure, Tertiary</topic><topic>PROTEINAS</topic><topic>PROTEINE</topic><topic>PROTEINS</topic><topic>RITMOS BIOLOGICOS</topic><topic>RYTHME BIOLOGIQUE</topic><topic>SECUENCIAS DE AMINOACIDOS</topic><topic>Sequence Analysis, Protein</topic><topic>SEQUENCE D'ACIDES AMINES</topic><topic>Sequence Homology, Amino Acid</topic><topic>Signal Transduction - radiation effects</topic><topic>Transcription, Genetic - radiation effects</topic><topic>Two-Hybrid System Techniques</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Nakamura, Y.(Nagoya Univ. (Japan). School of Agriculture)</creatorcontrib><creatorcontrib>Kato, T</creatorcontrib><creatorcontrib>Yamashino, T</creatorcontrib><creatorcontrib>Murakami, M</creatorcontrib><creatorcontrib>Mizuno, T</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Bioscience, biotechnology, and biochemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nakamura, Y.(Nagoya Univ. (Japan). School of Agriculture)</au><au>Kato, T</au><au>Yamashino, T</au><au>Murakami, M</au><au>Mizuno, T</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa</atitle><jtitle>Bioscience, biotechnology, and biochemistry</jtitle><addtitle>Biosci Biotechnol Biochem</addtitle><date>2007-05-01</date><risdate>2007</risdate><volume>71</volume><issue>5</issue><spage>1183</spage><epage>1191</epage><pages>1183-1191</pages><issn>0916-8451</issn><eissn>1347-6947</eissn><abstract>The model dicotyledon Arabidopsis thaliana has a characteristic small sub-family of phytochrome-interacting bHLH (basic Helix-Loop-Helix) factors, which are collectively designated the PIL (or PIF) (PHYTOCHROME INTERACTING FACTOR-LIKE) family proteins. In this study, we identified and characterized a set of highly homologous members (designated OsPIL11 to OsPIL16) in the model monocotyledon rice (Oryza sativa). Some of them (OsPIL11, OsPIL12, and OsPIL13) showed the ability to interact with the putative OsPRR1 (PSEUDO-RESPONSE REGULATOR 1) clock component, as far as the results of yeast two-hybrid assays were concerned. It was found that the expression of OsPIL13 is under the control of circadian rhythms (clock), while the expression of OsPIL15 is negatively regulated by light upon the onset to light exposure of etiolated seedlings. When the rice genes (OsPIL11 to OsPIL15) were over-expressed in A. thaliana, the resulting transgenic seedlings displayed anomalous morphologies with very long hypocotyls during early photomorphogenesis. These results suggest the view that the identified OsPILs are functional counterparts (or orthologs) of AtPILs, which are known to play important roles in red light-mediated (phyA and/or phyB-dependent) signal transduction pathways at immediate positions downstream of the photoreceptor in A. thaliana.</abstract><cop>Tokyo</cop><pub>Japan Society for Bioscience, Biotechnology, and Agrochemistry</pub><pmid>17485859</pmid><doi>10.1271/bbb.60643</doi><tpages>9</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0916-8451 |
| ispartof | Bioscience, biotechnology, and biochemistry, 2007-05, Vol.71 (5), p.1183-1191 |
| issn | 0916-8451 1347-6947 |
| language | eng |
| recordid | cdi_pascalfrancis_primary_18879088 |
| source | J-STAGE Free; MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Oxford University Press Journals All Titles (1996-Current); Freely Accessible Japanese Titles; Free Full-Text Journals in Chemistry |
| subjects | ADN Amino Acid Motifs Amino Acid Sequence AMINO ACID SEQUENCES ARABIDOPSIS THALIANA basic helix-loop-helix Basic Helix-Loop-Helix Transcription Factors - metabolism Basic Helix-Loop-Helix Transcription Factors - radiation effects Biological and medical sciences BIOLOGICAL RHYTHMS circadian clock Circadian Rhythm - radiation effects Conserved Sequence DNA DNA, Complementary DNA, Plant - genetics FITOCROMA Fundamental and applied biological sciences. Psychology Gene Expression Regulation, Plant - radiation effects Genes, Plant LIGHT light signal transduction LUMIERE LUZ Molecular Sequence Data Oryza - chemistry Oryza - genetics ORYZA SATIVA Phylogeny PHYTOCHROME Phytochrome - metabolism Phytochrome - radiation effects Protein Structure, Tertiary PROTEINAS PROTEINE PROTEINS RITMOS BIOLOGICOS RYTHME BIOLOGIQUE SECUENCIAS DE AMINOACIDOS Sequence Analysis, Protein SEQUENCE D'ACIDES AMINES Sequence Homology, Amino Acid Signal Transduction - radiation effects Transcription, Genetic - radiation effects Two-Hybrid System Techniques |
| title | Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-17T00%3A56%3A26IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pasca&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Characterization%20of%20a%20set%20of%20phytochrome-interacting%20factor-like%20bHLH%20proteins%20in%20Oryza%20sativa&rft.jtitle=Bioscience,%20biotechnology,%20and%20biochemistry&rft.au=Nakamura,%20Y.(Nagoya%20Univ.%20(Japan).%20School%20of%20Agriculture)&rft.date=2007-05-01&rft.volume=71&rft.issue=5&rft.spage=1183&rft.epage=1191&rft.pages=1183-1191&rft.issn=0916-8451&rft.eissn=1347-6947&rft_id=info:doi/10.1271/bbb.60643&rft_dat=%3Cproquest_pasca%3E3123347571%3C/proquest_pasca%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1449816969&rft_id=info:pmid/17485859&rfr_iscdi=true |