Remarkable Bacterial Diversity in the Tidal Flat Sediment as Revealed by 16S rDNA Analysis
A 16S rDNA clone library was generated to investigate the bacterial diversity in tidal flat sediment in Ganghwa Island, Republic of Korea. A total of 103 clones were sequenced and analyzed by comprehensive phylogenetic analyses. No clones were identical to any of known 16S rRNA sequences in public d...
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| Veröffentlicht in: | Journal of microbiology and biotechnology 2004-02, Vol.14 (1), p.205-211 |
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| creator | Kim, B.S. (Seoul National University, Seoul, Republic of Korea) Kang, H.J. (Ewha Womans University, Seoul, Republic of Korea) Oh, H.M. (Seoul National University, Seoul, Republic of Korea) Chun, J.S. (Seoul National University, Seoul, Republic of Korea), E-mail: jchun@snu.ac.kr Park, S.S. (Ewha Womans University, Seoul, Republic of Korea) |
| description | A 16S rDNA clone library was generated to investigate the bacterial diversity in tidal flat sediment in Ganghwa Island, Republic of Korea. A total of 103 clones were sequenced and analyzed by comprehensive phylogenetic analyses. No clones were identical to any of known 16S rRNA sequences in public databases. Sequenced clones fell into thirteen lineages of the domain Bacteria: the alpha, beta, gamma, delta, and epsilon Proteobacteria, Actinobacteria, CFB group, Chloroflexi, Acidobacteria, Planctomycetes, Verrucomicrobia, and known uncultured candidate divisions (OP11, BRC1, KSB1, and WS1). |
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(Seoul National University, Seoul, Republic of Korea) ; Kang, H.J. (Ewha Womans University, Seoul, Republic of Korea) ; Oh, H.M. (Seoul National University, Seoul, Republic of Korea) ; Chun, J.S. (Seoul National University, Seoul, Republic of Korea), E-mail: jchun@snu.ac.kr ; Park, S.S. (Ewha Womans University, Seoul, Republic of Korea)</creator><creatorcontrib>Kim, B.S. (Seoul National University, Seoul, Republic of Korea) ; Kang, H.J. (Ewha Womans University, Seoul, Republic of Korea) ; Oh, H.M. (Seoul National University, Seoul, Republic of Korea) ; Chun, J.S. (Seoul National University, Seoul, Republic of Korea), E-mail: jchun@snu.ac.kr ; Park, S.S. (Ewha Womans University, Seoul, Republic of Korea)</creatorcontrib><description>A 16S rDNA clone library was generated to investigate the bacterial diversity in tidal flat sediment in Ganghwa Island, Republic of Korea. A total of 103 clones were sequenced and analyzed by comprehensive phylogenetic analyses. No clones were identical to any of known 16S rRNA sequences in public databases. Sequenced clones fell into thirteen lineages of the domain Bacteria: the alpha, beta, gamma, delta, and epsilon Proteobacteria, Actinobacteria, CFB group, Chloroflexi, Acidobacteria, Planctomycetes, Verrucomicrobia, and known uncultured candidate divisions (OP11, BRC1, KSB1, and WS1).</description><identifier>ISSN: 1017-7825</identifier><language>eng</language><publisher>Seoul: Korean Society for Applied Microbiology</publisher><subject>16S rDNA sequencing ; Biological and medical sciences ; Biotechnology ; diversity ; FILOGENIA ; Fundamental and applied biological sciences. 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(Seoul National University, Seoul, Republic of Korea), E-mail: jchun@snu.ac.kr</creatorcontrib><creatorcontrib>Park, S.S. (Ewha Womans University, Seoul, Republic of Korea)</creatorcontrib><title>Remarkable Bacterial Diversity in the Tidal Flat Sediment as Revealed by 16S rDNA Analysis</title><title>Journal of microbiology and biotechnology</title><description>A 16S rDNA clone library was generated to investigate the bacterial diversity in tidal flat sediment in Ganghwa Island, Republic of Korea. A total of 103 clones were sequenced and analyzed by comprehensive phylogenetic analyses. No clones were identical to any of known 16S rRNA sequences in public databases. Sequenced clones fell into thirteen lineages of the domain Bacteria: the alpha, beta, gamma, delta, and epsilon Proteobacteria, Actinobacteria, CFB group, Chloroflexi, Acidobacteria, Planctomycetes, Verrucomicrobia, and known uncultured candidate divisions (OP11, BRC1, KSB1, and WS1).</description><subject>16S rDNA sequencing</subject><subject>Biological and medical sciences</subject><subject>Biotechnology</subject><subject>diversity</subject><subject>FILOGENIA</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>PHYLOGENIE</subject><subject>PHYLOGENY</subject><subject>Tidal flat</subject><issn>1017-7825</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2004</creationdate><recordtype>article</recordtype><recordid>eNotj1FLwzAUhfug4Jz-BCEvPhZym6ZpH-fmVBwKXZ98KTfNjUazOpIw6L-3MJ8OHD6-w7nIFsBB5aou5FV2HeM35xUUdbXIPlo6YPhB7Yk94JAoOPRs404UoksTcyNLX8Q6Z-Z66zGxPRl3oDExjKylE6Enw_TEoNqzsHlbsdWIfoou3mSXFn2k2_9cZt32sVs_57v3p5f1apfbgsuUNw0JVQoDSpZgUVa6AG1JV4Oqm0HLEkGB4VByIlHXAAZsWQshNQrghVhm92ftEeOA3gYcBxf7Y3DzsakHKecZwWfu7sxZ_O3xM8zMa1twLjlA0zTiD_0lVLY</recordid><startdate>20040201</startdate><enddate>20040201</enddate><creator>Kim, B.S. (Seoul National University, Seoul, Republic of Korea)</creator><creator>Kang, H.J. (Ewha Womans University, Seoul, Republic of Korea)</creator><creator>Oh, H.M. (Seoul National University, Seoul, Republic of Korea)</creator><creator>Chun, J.S. 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| subjects | 16S rDNA sequencing Biological and medical sciences Biotechnology diversity FILOGENIA Fundamental and applied biological sciences. Psychology PHYLOGENIE PHYLOGENY Tidal flat |
| title | Remarkable Bacterial Diversity in the Tidal Flat Sediment as Revealed by 16S rDNA Analysis |
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