role of 4-hydroxyphenylpyruvate dioxygenase in enhancement of solid-phase electron transfer by Shewanella oneidensis MR-1
We hypothesized that Shewanella oneidensis MR-1, a model dissimilatory metal-reducing bacterium, could utilize environmentally relevant concentrations of tyrosine to produce pyomelanin for enhanced Fe(III) oxide reduction. Because homogentisate is an intermediate of the tyrosine degradation pathway,...
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description | We hypothesized that Shewanella oneidensis MR-1, a model dissimilatory metal-reducing bacterium, could utilize environmentally relevant concentrations of tyrosine to produce pyomelanin for enhanced Fe(III) oxide reduction. Because homogentisate is an intermediate of the tyrosine degradation pathway, and a precursor of a redox-cycling metabolite, pyomelanin, we evaluated the process of homogentisate production by S. oneidensis MR-1, in order to identify the key steps involved in pyomelanin production. We determined that two enzymes involved in this pathway, 4-hydroxyphenylpyruvate dioxygenase and homogentisate 1,2-dioxygenase are responsible for homogentisate production and oxidation, respectively. We used genetic analysis and physiological characterization of MR-1 strains either deficient in or displaying substantially increased pyomelanin production. The relative significance imparted by pyomelanin on solid-phase electron transfer was also addressed using electrochemical techniques, which allowed us to extend the genetic and physiological findings to biogeochemical cycling of metals. Based on our findings, environmental production of pyomelanin from available organic precursors could contribute to the survival of S. oneidensis MR-1 when dissolved oxygen concentrations become low, by providing an increased capacity for solid-phase metal reduction. This study demonstrates the role of organic precursors and their concentrations in pyomelanin production, solid phase metal reduction and biogeochemical cycling of iron. |
doi_str_mv | 10.1111/j.1574-6941.2009.00670.x |
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(PNNL), Richland, WA (United States)</creatorcontrib><description>We hypothesized that Shewanella oneidensis MR-1, a model dissimilatory metal-reducing bacterium, could utilize environmentally relevant concentrations of tyrosine to produce pyomelanin for enhanced Fe(III) oxide reduction. Because homogentisate is an intermediate of the tyrosine degradation pathway, and a precursor of a redox-cycling metabolite, pyomelanin, we evaluated the process of homogentisate production by S. oneidensis MR-1, in order to identify the key steps involved in pyomelanin production. We determined that two enzymes involved in this pathway, 4-hydroxyphenylpyruvate dioxygenase and homogentisate 1,2-dioxygenase are responsible for homogentisate production and oxidation, respectively. We used genetic analysis and physiological characterization of MR-1 strains either deficient in or displaying substantially increased pyomelanin production. The relative significance imparted by pyomelanin on solid-phase electron transfer was also addressed using electrochemical techniques, which allowed us to extend the genetic and physiological findings to biogeochemical cycling of metals. Based on our findings, environmental production of pyomelanin from available organic precursors could contribute to the survival of S. oneidensis MR-1 when dissolved oxygen concentrations become low, by providing an increased capacity for solid-phase metal reduction. This study demonstrates the role of organic precursors and their concentrations in pyomelanin production, solid phase metal reduction and biogeochemical cycling of iron.</description><identifier>ISSN: 0168-6496</identifier><identifier>EISSN: 1574-6941</identifier><identifier>DOI: 10.1111/j.1574-6941.2009.00670.x</identifier><identifier>PMID: 19573203</identifier><language>eng</language><publisher>Oxford, UK: Oxford, UK : Blackwell Publishing Ltd</publisher><subject>03 NATURAL GAS ; 4-Hydroxyphenylpyruvate dioxygenase ; 4-Hydroxyphenylpyruvate Dioxygenase - genetics ; 4-Hydroxyphenylpyruvate Dioxygenase - metabolism ; Bacterial Proteins - genetics ; Bacterial Proteins - metabolism ; Biodegradation ; Biogeochemical cycles ; Biogeochemistry ; CAPACITY ; Cycles ; CYTOCHROMES ; dissimilatory metal-reducing bacteria ; Dissolved oxygen ; Ecology ; EFFICIENCY ; Electrochemical Techniques ; Electrochemistry ; electron shuttle ; ELECTRON TRANSFER ; Electron Transport ; ELECTRONS ; ENZYMES ; Ferric Compounds - metabolism ; GENES ; Genetic analysis ; Genetic Complementation Test ; Heavy metals ; Homogentisate 1,2-dioxygenase ; Homogentisate 1,2-Dioxygenase - genetics ; Homogentisate 1,2-Dioxygenase - metabolism ; hydrous ferric oxide ; Iron ; iron minerals ; Melanins - biosynthesis ; MEMBRANES ; Metabolites ; Metal concentrations ; METHANE ; microbial electron transfer ; Microbiology ; MUTANTS ; OXIDATION ; Oxidation-Reduction ; OXIDES ; Physiology ; PRECURSOR ; Precursors ; PRODUCTION ; pyomelanin ; Redox properties ; Reduction ; Reduction (metal working) ; Shewanella - enzymology ; Shewanella - genetics ; Shewanella - growth & development ; Shewanella oneidensis ; Solid phases ; STRAINS ; TYROSINE ; Tyrosine - metabolism</subject><ispartof>FEMS microbiology ecology, 2009-05, Vol.68 (2), p.223-225</ispartof><rights>2009 Federation of European Microbiological Societies Published by Blackwell Publishing Ltd. All rights reserved 2009</rights><rights>Journal compilation © 2009 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. No claim to original US government works</rights><rights>2009 Federation of European Microbiological Societies Published by Blackwell Publishing Ltd. All rights reserved</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5200-9fe102fe9e3c1d7c850ce619ddd1aa91c233f3e22b6839d8aaaefce76eececd13</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fj.1574-6941.2009.00670.x$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fj.1574-6941.2009.00670.x$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>230,314,776,780,881,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19573203$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/biblio/952906$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Turick, Charles E</creatorcontrib><creatorcontrib>Beliaev, Alex S</creatorcontrib><creatorcontrib>Zakrajsek, Brian A</creatorcontrib><creatorcontrib>Reardon, Catherine L</creatorcontrib><creatorcontrib>Lowy, Daniel A</creatorcontrib><creatorcontrib>Poppy, Tara E</creatorcontrib><creatorcontrib>Maloney, Andrea</creatorcontrib><creatorcontrib>Ekechukwu, Amy A</creatorcontrib><creatorcontrib>Pacific Northwest National Lab. (PNNL), Richland, WA (United States)</creatorcontrib><title>role of 4-hydroxyphenylpyruvate dioxygenase in enhancement of solid-phase electron transfer by Shewanella oneidensis MR-1</title><title>FEMS microbiology ecology</title><addtitle>FEMS Microbiol Ecol</addtitle><description>We hypothesized that Shewanella oneidensis MR-1, a model dissimilatory metal-reducing bacterium, could utilize environmentally relevant concentrations of tyrosine to produce pyomelanin for enhanced Fe(III) oxide reduction. Because homogentisate is an intermediate of the tyrosine degradation pathway, and a precursor of a redox-cycling metabolite, pyomelanin, we evaluated the process of homogentisate production by S. oneidensis MR-1, in order to identify the key steps involved in pyomelanin production. We determined that two enzymes involved in this pathway, 4-hydroxyphenylpyruvate dioxygenase and homogentisate 1,2-dioxygenase are responsible for homogentisate production and oxidation, respectively. We used genetic analysis and physiological characterization of MR-1 strains either deficient in or displaying substantially increased pyomelanin production. The relative significance imparted by pyomelanin on solid-phase electron transfer was also addressed using electrochemical techniques, which allowed us to extend the genetic and physiological findings to biogeochemical cycling of metals. Based on our findings, environmental production of pyomelanin from available organic precursors could contribute to the survival of S. oneidensis MR-1 when dissolved oxygen concentrations become low, by providing an increased capacity for solid-phase metal reduction. This study demonstrates the role of organic precursors and their concentrations in pyomelanin production, solid phase metal reduction and biogeochemical cycling of iron.</description><subject>03 NATURAL GAS</subject><subject>4-Hydroxyphenylpyruvate dioxygenase</subject><subject>4-Hydroxyphenylpyruvate Dioxygenase - genetics</subject><subject>4-Hydroxyphenylpyruvate Dioxygenase - metabolism</subject><subject>Bacterial Proteins - genetics</subject><subject>Bacterial Proteins - metabolism</subject><subject>Biodegradation</subject><subject>Biogeochemical cycles</subject><subject>Biogeochemistry</subject><subject>CAPACITY</subject><subject>Cycles</subject><subject>CYTOCHROMES</subject><subject>dissimilatory metal-reducing bacteria</subject><subject>Dissolved oxygen</subject><subject>Ecology</subject><subject>EFFICIENCY</subject><subject>Electrochemical Techniques</subject><subject>Electrochemistry</subject><subject>electron shuttle</subject><subject>ELECTRON TRANSFER</subject><subject>Electron Transport</subject><subject>ELECTRONS</subject><subject>ENZYMES</subject><subject>Ferric Compounds - metabolism</subject><subject>GENES</subject><subject>Genetic analysis</subject><subject>Genetic Complementation Test</subject><subject>Heavy metals</subject><subject>Homogentisate 1,2-dioxygenase</subject><subject>Homogentisate 1,2-Dioxygenase - genetics</subject><subject>Homogentisate 1,2-Dioxygenase - metabolism</subject><subject>hydrous ferric oxide</subject><subject>Iron</subject><subject>iron minerals</subject><subject>Melanins - biosynthesis</subject><subject>MEMBRANES</subject><subject>Metabolites</subject><subject>Metal concentrations</subject><subject>METHANE</subject><subject>microbial electron transfer</subject><subject>Microbiology</subject><subject>MUTANTS</subject><subject>OXIDATION</subject><subject>Oxidation-Reduction</subject><subject>OXIDES</subject><subject>Physiology</subject><subject>PRECURSOR</subject><subject>Precursors</subject><subject>PRODUCTION</subject><subject>pyomelanin</subject><subject>Redox properties</subject><subject>Reduction</subject><subject>Reduction (metal working)</subject><subject>Shewanella - enzymology</subject><subject>Shewanella - genetics</subject><subject>Shewanella - growth & development</subject><subject>Shewanella oneidensis</subject><subject>Solid phases</subject><subject>STRAINS</subject><subject>TYROSINE</subject><subject>Tyrosine - metabolism</subject><issn>0168-6496</issn><issn>1574-6941</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqFkl9rFDEUxQdR7Lb6FTQi9G3G_JlJNuCLlFaFFsHa55BN7nSyzCZjMmN3vr0Zd1VQxLwk5P7O5R7uKQpEcEXyebOtSCPqksuaVBRjWWHMBa72j4rVr8LjYoUJX5e8lvykOE1pizFpWI2fFidENoJRzFbFHEMPKLSoLrvZxrCfhw783A9znL7pEZB1-e8evE6AnEfgO-0N7MCPiyqF3tly6JYq9GDGGDwao_aphYg2M7rt4EF76HuNggdnwSeX0M3nkjwrnrS6T_D8eJ8Vd1eXXy4-lNef3n-8eHddmiZbK2ULBNMWJDBDrDDrBhvgRFpridaSGMpYy4DSDV8zaddaa2gNCA5gwFjCzopXh74hjU4l40YwnQne52mVbKjEPDPnB2aI4esEaVQ7l8wytYcwJcVF3WAuyX9BihshKKkz-PoPcBum6LNRRRnmDROUiky9OFLTZgdWDdHtdJzVz_1k4O0BeHA9zL_rWC05UFu1rFst61ZLDtSPHKi9urq8yY8sZ0fv0_APcfmXOKteHlStDkrfR5fU3S3FhOU81TXlnH0HynS_wA</recordid><startdate>200905</startdate><enddate>200905</enddate><creator>Turick, Charles E</creator><creator>Beliaev, Alex S</creator><creator>Zakrajsek, Brian A</creator><creator>Reardon, Catherine L</creator><creator>Lowy, Daniel A</creator><creator>Poppy, Tara E</creator><creator>Maloney, Andrea</creator><creator>Ekechukwu, Amy A</creator><general>Oxford, UK : Blackwell Publishing Ltd</general><general>Blackwell Publishing Ltd</general><general>Oxford University Press</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>3V.</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>OTOTI</scope></search><sort><creationdate>200905</creationdate><title>role of 4-hydroxyphenylpyruvate dioxygenase in enhancement of solid-phase electron transfer by Shewanella oneidensis MR-1</title><author>Turick, Charles E ; Beliaev, Alex S ; Zakrajsek, Brian A ; Reardon, Catherine L ; Lowy, Daniel A ; Poppy, Tara E ; Maloney, Andrea ; Ekechukwu, Amy A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5200-9fe102fe9e3c1d7c850ce619ddd1aa91c233f3e22b6839d8aaaefce76eececd13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>03 NATURAL GAS</topic><topic>4-Hydroxyphenylpyruvate dioxygenase</topic><topic>4-Hydroxyphenylpyruvate Dioxygenase - genetics</topic><topic>4-Hydroxyphenylpyruvate Dioxygenase - metabolism</topic><topic>Bacterial Proteins - genetics</topic><topic>Bacterial Proteins - metabolism</topic><topic>Biodegradation</topic><topic>Biogeochemical cycles</topic><topic>Biogeochemistry</topic><topic>CAPACITY</topic><topic>Cycles</topic><topic>CYTOCHROMES</topic><topic>dissimilatory metal-reducing bacteria</topic><topic>Dissolved oxygen</topic><topic>Ecology</topic><topic>EFFICIENCY</topic><topic>Electrochemical Techniques</topic><topic>Electrochemistry</topic><topic>electron shuttle</topic><topic>ELECTRON TRANSFER</topic><topic>Electron Transport</topic><topic>ELECTRONS</topic><topic>ENZYMES</topic><topic>Ferric Compounds - metabolism</topic><topic>GENES</topic><topic>Genetic analysis</topic><topic>Genetic Complementation Test</topic><topic>Heavy metals</topic><topic>Homogentisate 1,2-dioxygenase</topic><topic>Homogentisate 1,2-Dioxygenase - genetics</topic><topic>Homogentisate 1,2-Dioxygenase - metabolism</topic><topic>hydrous ferric oxide</topic><topic>Iron</topic><topic>iron minerals</topic><topic>Melanins - biosynthesis</topic><topic>MEMBRANES</topic><topic>Metabolites</topic><topic>Metal concentrations</topic><topic>METHANE</topic><topic>microbial electron transfer</topic><topic>Microbiology</topic><topic>MUTANTS</topic><topic>OXIDATION</topic><topic>Oxidation-Reduction</topic><topic>OXIDES</topic><topic>Physiology</topic><topic>PRECURSOR</topic><topic>Precursors</topic><topic>PRODUCTION</topic><topic>pyomelanin</topic><topic>Redox properties</topic><topic>Reduction</topic><topic>Reduction (metal working)</topic><topic>Shewanella - enzymology</topic><topic>Shewanella - genetics</topic><topic>Shewanella - growth & development</topic><topic>Shewanella oneidensis</topic><topic>Solid phases</topic><topic>STRAINS</topic><topic>TYROSINE</topic><topic>Tyrosine - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Turick, Charles E</creatorcontrib><creatorcontrib>Beliaev, Alex S</creatorcontrib><creatorcontrib>Zakrajsek, Brian A</creatorcontrib><creatorcontrib>Reardon, Catherine L</creatorcontrib><creatorcontrib>Lowy, Daniel A</creatorcontrib><creatorcontrib>Poppy, Tara E</creatorcontrib><creatorcontrib>Maloney, Andrea</creatorcontrib><creatorcontrib>Ekechukwu, Amy A</creatorcontrib><creatorcontrib>Pacific Northwest National Lab. 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(PNNL), Richland, WA (United States)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>role of 4-hydroxyphenylpyruvate dioxygenase in enhancement of solid-phase electron transfer by Shewanella oneidensis MR-1</atitle><jtitle>FEMS microbiology ecology</jtitle><addtitle>FEMS Microbiol Ecol</addtitle><date>2009-05</date><risdate>2009</risdate><volume>68</volume><issue>2</issue><spage>223</spage><epage>225</epage><pages>223-225</pages><issn>0168-6496</issn><eissn>1574-6941</eissn><abstract>We hypothesized that Shewanella oneidensis MR-1, a model dissimilatory metal-reducing bacterium, could utilize environmentally relevant concentrations of tyrosine to produce pyomelanin for enhanced Fe(III) oxide reduction. Because homogentisate is an intermediate of the tyrosine degradation pathway, and a precursor of a redox-cycling metabolite, pyomelanin, we evaluated the process of homogentisate production by S. oneidensis MR-1, in order to identify the key steps involved in pyomelanin production. We determined that two enzymes involved in this pathway, 4-hydroxyphenylpyruvate dioxygenase and homogentisate 1,2-dioxygenase are responsible for homogentisate production and oxidation, respectively. We used genetic analysis and physiological characterization of MR-1 strains either deficient in or displaying substantially increased pyomelanin production. The relative significance imparted by pyomelanin on solid-phase electron transfer was also addressed using electrochemical techniques, which allowed us to extend the genetic and physiological findings to biogeochemical cycling of metals. Based on our findings, environmental production of pyomelanin from available organic precursors could contribute to the survival of S. oneidensis MR-1 when dissolved oxygen concentrations become low, by providing an increased capacity for solid-phase metal reduction. This study demonstrates the role of organic precursors and their concentrations in pyomelanin production, solid phase metal reduction and biogeochemical cycling of iron.</abstract><cop>Oxford, UK</cop><pub>Oxford, UK : Blackwell Publishing Ltd</pub><pmid>19573203</pmid><doi>10.1111/j.1574-6941.2009.00670.x</doi><tpages>3</tpages><oa>free_for_read</oa></addata></record> |
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language | eng |
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source | Oxford Journals Open Access Collection; MEDLINE; Wiley Online Library Journals Frontfile Complete; EZB-FREE-00999 freely available EZB journals |
subjects | 03 NATURAL GAS 4-Hydroxyphenylpyruvate dioxygenase 4-Hydroxyphenylpyruvate Dioxygenase - genetics 4-Hydroxyphenylpyruvate Dioxygenase - metabolism Bacterial Proteins - genetics Bacterial Proteins - metabolism Biodegradation Biogeochemical cycles Biogeochemistry CAPACITY Cycles CYTOCHROMES dissimilatory metal-reducing bacteria Dissolved oxygen Ecology EFFICIENCY Electrochemical Techniques Electrochemistry electron shuttle ELECTRON TRANSFER Electron Transport ELECTRONS ENZYMES Ferric Compounds - metabolism GENES Genetic analysis Genetic Complementation Test Heavy metals Homogentisate 1,2-dioxygenase Homogentisate 1,2-Dioxygenase - genetics Homogentisate 1,2-Dioxygenase - metabolism hydrous ferric oxide Iron iron minerals Melanins - biosynthesis MEMBRANES Metabolites Metal concentrations METHANE microbial electron transfer Microbiology MUTANTS OXIDATION Oxidation-Reduction OXIDES Physiology PRECURSOR Precursors PRODUCTION pyomelanin Redox properties Reduction Reduction (metal working) Shewanella - enzymology Shewanella - genetics Shewanella - growth & development Shewanella oneidensis Solid phases STRAINS TYROSINE Tyrosine - metabolism |
title | role of 4-hydroxyphenylpyruvate dioxygenase in enhancement of solid-phase electron transfer by Shewanella oneidensis MR-1 |
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