Functional and evolutionary analyses on expressed intronless genes in the mouse genome
Using computational approaches we have identified 2017 expressed intronless genes in the mouse genome. Evolutionary analysis reveals that 56 intronless genes are conserved among the three domains of life – bacteria, archea and eukaryotes. These highly conserved intronless genes were found to be invo...
Gespeichert in:
Veröffentlicht in: | FEBS letters 2006-02, Vol.580 (5), p.1472-1478 |
---|---|
Hauptverfasser: | , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 1478 |
---|---|
container_issue | 5 |
container_start_page | 1472 |
container_title | FEBS letters |
container_volume | 580 |
creator | Sakharkar, Kishore Ramaji Sakharkar, Meena Kishore Culiat, Cymbeline T. Chow, Vincent T.K. Pervaiz, Shazib |
description | Using computational approaches we have identified 2017 expressed intronless genes in the mouse genome. Evolutionary analysis reveals that 56 intronless genes are conserved among the three domains of life – bacteria, archea and eukaryotes. These highly conserved intronless genes were found to be involved in essential housekeeping functions. About 80% of expressed mouse intronless genes have orthologs in eukaryotic genomes only, and thus are specific to eukaryotic organisms. 608 of these genes have intronless human orthologs and 302 of these orthologs have a match in OMIM database. Investigation into these mouse genes will be important in generating mouse models for understanding human diseases. |
doi_str_mv | 10.1016/j.febslet.2006.01.070 |
format | Article |
fullrecord | <record><control><sourceid>proquest_osti_</sourceid><recordid>TN_cdi_osti_scitechconnect_930737</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0014579306001426</els_id><sourcerecordid>67656798</sourcerecordid><originalsourceid>FETCH-LOGICAL-c5326-9cb2ebb237467b6b87503fc2e2bdc5a7dd9f9de804f3f6bb25f5010a3f626da43</originalsourceid><addsrcrecordid>eNqNkUtv1DAUhS0EokPhJ4DChl2CH4kdrxBUHYpUiQWPrZXYN9Qjxx7spDD_HpuMxLKs7Hv93eOrcxB6SXBDMOFvD80EY3KwNBRj3mDSYIEfoR3pBatZy_vHaIcxaetOSHaBnqV0wLnuiXyKLghvuWSE79D3_er1YoMfXDV4U8F9cOvfOp5yY3CnBKkKvoLfxwgpgamsX2LwLhfVD_D51fpquYNqDmuC0gozPEdPpsEleHE-L9G3_fXXq5v69vPHT1fvb2vdMcprqUcK40iZaLkY-diLDrNJU6Cj0d0gjJGTNNDjdmITz2A3dZjgIReUm6Fll-j1phvSYlXSdgF9p4P3oBclGRZMZObNxhxj-LlCWtRskwbnBg95ZcUF77iQ_YMgkb3kkhaw20AdQ0oRJnWMds6OKYJVSUcd1DkdVdJRmKicTp57df5gHWcw_6bOcWTgZgN-WQen_1NV--sP9EuJuiSNebnRIvVuk4Js_72FWNwBr8HYWMwxwT6w7R9U17nc</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>19896928</pqid></control><display><type>article</type><title>Functional and evolutionary analyses on expressed intronless genes in the mouse genome</title><source>Wiley-Blackwell Journals</source><source>MEDLINE</source><source>Elsevier ScienceDirect Journals Complete</source><source>Wiley Free Archive</source><source>Alma/SFX Local Collection</source><source>EZB Electronic Journals Library</source><creator>Sakharkar, Kishore Ramaji ; Sakharkar, Meena Kishore ; Culiat, Cymbeline T. ; Chow, Vincent T.K. ; Pervaiz, Shazib</creator><creatorcontrib>Sakharkar, Kishore Ramaji ; Sakharkar, Meena Kishore ; Culiat, Cymbeline T. ; Chow, Vincent T.K. ; Pervaiz, Shazib ; Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)</creatorcontrib><description>Using computational approaches we have identified 2017 expressed intronless genes in the mouse genome. Evolutionary analysis reveals that 56 intronless genes are conserved among the three domains of life – bacteria, archea and eukaryotes. These highly conserved intronless genes were found to be involved in essential housekeeping functions. About 80% of expressed mouse intronless genes have orthologs in eukaryotic genomes only, and thus are specific to eukaryotic organisms. 608 of these genes have intronless human orthologs and 302 of these orthologs have a match in OMIM database. Investigation into these mouse genes will be important in generating mouse models for understanding human diseases.</description><identifier>ISSN: 0014-5793</identifier><identifier>EISSN: 1873-3468</identifier><identifier>DOI: 10.1016/j.febslet.2006.01.070</identifier><identifier>PMID: 16469316</identifier><language>eng</language><publisher>England: Elsevier B.V</publisher><subject>Animals ; BACTERIA ; BASIC BIOLOGICAL SCIENCES ; Databases, Nucleic Acid ; DISEASES ; Evolution, Molecular ; FUNCTIONALS ; GENES ; Genes - physiology ; Genome ; Housekeeping ; Human disease ; Humans ; Intronless ; INTRONS ; Mice - genetics ; Mouse models ; Ortholog ; Sequence Homology ; Single exonic genes ; Species Specificity</subject><ispartof>FEBS letters, 2006-02, Vol.580 (5), p.1472-1478</ispartof><rights>2006 Federation of European Biochemical Societies</rights><rights>FEBS Letters 580 (2006) 1873-3468 © 2015 Federation of European Biochemical Societies</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5326-9cb2ebb237467b6b87503fc2e2bdc5a7dd9f9de804f3f6bb25f5010a3f626da43</citedby><cites>FETCH-LOGICAL-c5326-9cb2ebb237467b6b87503fc2e2bdc5a7dd9f9de804f3f6bb25f5010a3f626da43</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1016%2Fj.febslet.2006.01.070$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.febslet.2006.01.070$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>230,314,776,780,881,1411,1427,3536,27903,27904,45553,45554,45974,46388,46812</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16469316$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/biblio/930737$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Sakharkar, Kishore Ramaji</creatorcontrib><creatorcontrib>Sakharkar, Meena Kishore</creatorcontrib><creatorcontrib>Culiat, Cymbeline T.</creatorcontrib><creatorcontrib>Chow, Vincent T.K.</creatorcontrib><creatorcontrib>Pervaiz, Shazib</creatorcontrib><creatorcontrib>Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)</creatorcontrib><title>Functional and evolutionary analyses on expressed intronless genes in the mouse genome</title><title>FEBS letters</title><addtitle>FEBS Lett</addtitle><description>Using computational approaches we have identified 2017 expressed intronless genes in the mouse genome. Evolutionary analysis reveals that 56 intronless genes are conserved among the three domains of life – bacteria, archea and eukaryotes. These highly conserved intronless genes were found to be involved in essential housekeeping functions. About 80% of expressed mouse intronless genes have orthologs in eukaryotic genomes only, and thus are specific to eukaryotic organisms. 608 of these genes have intronless human orthologs and 302 of these orthologs have a match in OMIM database. Investigation into these mouse genes will be important in generating mouse models for understanding human diseases.</description><subject>Animals</subject><subject>BACTERIA</subject><subject>BASIC BIOLOGICAL SCIENCES</subject><subject>Databases, Nucleic Acid</subject><subject>DISEASES</subject><subject>Evolution, Molecular</subject><subject>FUNCTIONALS</subject><subject>GENES</subject><subject>Genes - physiology</subject><subject>Genome</subject><subject>Housekeeping</subject><subject>Human disease</subject><subject>Humans</subject><subject>Intronless</subject><subject>INTRONS</subject><subject>Mice - genetics</subject><subject>Mouse models</subject><subject>Ortholog</subject><subject>Sequence Homology</subject><subject>Single exonic genes</subject><subject>Species Specificity</subject><issn>0014-5793</issn><issn>1873-3468</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkUtv1DAUhS0EokPhJ4DChl2CH4kdrxBUHYpUiQWPrZXYN9Qjxx7spDD_HpuMxLKs7Hv93eOrcxB6SXBDMOFvD80EY3KwNBRj3mDSYIEfoR3pBatZy_vHaIcxaetOSHaBnqV0wLnuiXyKLghvuWSE79D3_er1YoMfXDV4U8F9cOvfOp5yY3CnBKkKvoLfxwgpgamsX2LwLhfVD_D51fpquYNqDmuC0gozPEdPpsEleHE-L9G3_fXXq5v69vPHT1fvb2vdMcprqUcK40iZaLkY-diLDrNJU6Cj0d0gjJGTNNDjdmITz2A3dZjgIReUm6Fll-j1phvSYlXSdgF9p4P3oBclGRZMZObNxhxj-LlCWtRskwbnBg95ZcUF77iQ_YMgkb3kkhaw20AdQ0oRJnWMds6OKYJVSUcd1DkdVdJRmKicTp57df5gHWcw_6bOcWTgZgN-WQen_1NV--sP9EuJuiSNebnRIvVuk4Js_72FWNwBr8HYWMwxwT6w7R9U17nc</recordid><startdate>20060220</startdate><enddate>20060220</enddate><creator>Sakharkar, Kishore Ramaji</creator><creator>Sakharkar, Meena Kishore</creator><creator>Culiat, Cymbeline T.</creator><creator>Chow, Vincent T.K.</creator><creator>Pervaiz, Shazib</creator><general>Elsevier B.V</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>OTOTI</scope></search><sort><creationdate>20060220</creationdate><title>Functional and evolutionary analyses on expressed intronless genes in the mouse genome</title><author>Sakharkar, Kishore Ramaji ; Sakharkar, Meena Kishore ; Culiat, Cymbeline T. ; Chow, Vincent T.K. ; Pervaiz, Shazib</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5326-9cb2ebb237467b6b87503fc2e2bdc5a7dd9f9de804f3f6bb25f5010a3f626da43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>Animals</topic><topic>BACTERIA</topic><topic>BASIC BIOLOGICAL SCIENCES</topic><topic>Databases, Nucleic Acid</topic><topic>DISEASES</topic><topic>Evolution, Molecular</topic><topic>FUNCTIONALS</topic><topic>GENES</topic><topic>Genes - physiology</topic><topic>Genome</topic><topic>Housekeeping</topic><topic>Human disease</topic><topic>Humans</topic><topic>Intronless</topic><topic>INTRONS</topic><topic>Mice - genetics</topic><topic>Mouse models</topic><topic>Ortholog</topic><topic>Sequence Homology</topic><topic>Single exonic genes</topic><topic>Species Specificity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sakharkar, Kishore Ramaji</creatorcontrib><creatorcontrib>Sakharkar, Meena Kishore</creatorcontrib><creatorcontrib>Culiat, Cymbeline T.</creatorcontrib><creatorcontrib>Chow, Vincent T.K.</creatorcontrib><creatorcontrib>Pervaiz, Shazib</creatorcontrib><creatorcontrib>Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV</collection><jtitle>FEBS letters</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sakharkar, Kishore Ramaji</au><au>Sakharkar, Meena Kishore</au><au>Culiat, Cymbeline T.</au><au>Chow, Vincent T.K.</au><au>Pervaiz, Shazib</au><aucorp>Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Functional and evolutionary analyses on expressed intronless genes in the mouse genome</atitle><jtitle>FEBS letters</jtitle><addtitle>FEBS Lett</addtitle><date>2006-02-20</date><risdate>2006</risdate><volume>580</volume><issue>5</issue><spage>1472</spage><epage>1478</epage><pages>1472-1478</pages><issn>0014-5793</issn><eissn>1873-3468</eissn><abstract>Using computational approaches we have identified 2017 expressed intronless genes in the mouse genome. Evolutionary analysis reveals that 56 intronless genes are conserved among the three domains of life – bacteria, archea and eukaryotes. These highly conserved intronless genes were found to be involved in essential housekeeping functions. About 80% of expressed mouse intronless genes have orthologs in eukaryotic genomes only, and thus are specific to eukaryotic organisms. 608 of these genes have intronless human orthologs and 302 of these orthologs have a match in OMIM database. Investigation into these mouse genes will be important in generating mouse models for understanding human diseases.</abstract><cop>England</cop><pub>Elsevier B.V</pub><pmid>16469316</pmid><doi>10.1016/j.febslet.2006.01.070</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0014-5793 |
ispartof | FEBS letters, 2006-02, Vol.580 (5), p.1472-1478 |
issn | 0014-5793 1873-3468 |
language | eng |
recordid | cdi_osti_scitechconnect_930737 |
source | Wiley-Blackwell Journals; MEDLINE; Elsevier ScienceDirect Journals Complete; Wiley Free Archive; Alma/SFX Local Collection; EZB Electronic Journals Library |
subjects | Animals BACTERIA BASIC BIOLOGICAL SCIENCES Databases, Nucleic Acid DISEASES Evolution, Molecular FUNCTIONALS GENES Genes - physiology Genome Housekeeping Human disease Humans Intronless INTRONS Mice - genetics Mouse models Ortholog Sequence Homology Single exonic genes Species Specificity |
title | Functional and evolutionary analyses on expressed intronless genes in the mouse genome |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-22T17%3A49%3A31IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_osti_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Functional%20and%20evolutionary%20analyses%20on%20expressed%20intronless%20genes%20in%20the%20mouse%20genome&rft.jtitle=FEBS%20letters&rft.au=Sakharkar,%20Kishore%20Ramaji&rft.aucorp=Oak%20Ridge%20National%20Lab.%20(ORNL),%20Oak%20Ridge,%20TN%20(United%20States)&rft.date=2006-02-20&rft.volume=580&rft.issue=5&rft.spage=1472&rft.epage=1478&rft.pages=1472-1478&rft.issn=0014-5793&rft.eissn=1873-3468&rft_id=info:doi/10.1016/j.febslet.2006.01.070&rft_dat=%3Cproquest_osti_%3E67656798%3C/proquest_osti_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=19896928&rft_id=info:pmid/16469316&rft_els_id=S0014579306001426&rfr_iscdi=true |