CT-based machine learning model to predict the Fuhrman nuclear grade of clear cell renal cell carcinoma
Purpose To predict the Fuhrman grade of clear cell renal cell carcinoma (ccRCC) with a machine learning classifier based on single- or three-phase computed tomography (CT) images. Materials and methods Patients with pathologically proven ccRCC from February 1, 2009 to September 31, 2018 who were not...
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Veröffentlicht in: | Abdominal imaging 2019-07, Vol.44 (7), p.2528-2534 |
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description | Purpose
To predict the Fuhrman grade of clear cell renal cell carcinoma (ccRCC) with a machine learning classifier based on single- or three-phase computed tomography (CT) images.
Materials and methods
Patients with pathologically proven ccRCC from February 1, 2009 to September 31, 2018 who were not treated were retrospectively collected for machine learning-based analysis. The texture features were extracted and ranked from precontrast phase (PCP), corticomedullary phase (CMP), nephrographic phase (NP) and three-phase CT images, and open-source gradient boosting from the decision tree library of CatBoost was used to establish a machine learning classifier to differentiate low- from high-grade ccRCC. The performances of machine learning classifiers based on features from single- and three-phase CT images were compared with each other.
Results
A total of 231 patients with 232 pathologically proven ccRCC lesions were retrospectively collected. 35, 36, 41, and 22 Features were extracted and ranked from PCP, CMP, NP, and three-phase CT images, respectively. The machine learning model based on three-phase CT images [area under the ROC curve (AUC) = 0.87] achieved the best diagnostic performance for differentiating low- from high-grade ccRCC, followed by single-phase NP (AUC = 0.84), CMP (AUC = 0.80), and PCP images (AUC = 0.82).
Conclusion
Machine learning classifiers can be promising noninvasive techniques to differentiate low- and high-Fuhrman nuclear grade ccRCC, and classifiers based on three-phase CT images are superior to those based on features from each single phase. |
doi_str_mv | 10.1007/s00261-019-01992-7 |
format | Article |
fullrecord | <record><control><sourceid>proquest_osti_</sourceid><recordid>TN_cdi_osti_scitechconnect_22922979</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2198315524</sourcerecordid><originalsourceid>FETCH-LOGICAL-c469t-57b24f32521bebdefc3099a620599557a37cbeb48017ff0c7a1fa1ac7db494ba3</originalsourceid><addsrcrecordid>eNp9kU1r3DAQhkVpaEKSP9BDEeTSi9ORbFmrY1jyBYFeUuhNjOXxroMtbSX7kH8f7TrZ3AoSGjHPvDPSy9h3AdcCQP9KALIWBQiz30YW-gs7k2VdFwBq9fUYV39P2WVKLwAgaiWEVN_YaQlGGKjEGdusn4sGE7V8RLftPfGBMPreb_gYWhr4FPguUtu7iU9b4nfzNo7ouZ_dHuSbiC3x0PHl6mgYeCSPwxI6jK73YcQLdtLhkOjy_Txnf-5un9cPxdPv-8f1zVPhqtpMhdKNrLpSKikaalrqXB7VYC1BGaOUxlK7nKhWIHTXgdMoOhTodNtUpmqwPGdXi25IU2-T6ydyWxe8JzdZKU1e2mTq50LtYvg3U5rs2Kf9wOgpzMnK_KNipaSsPgWP6EuYY37ggVqVQqkDJRfKxZBSpM7uYj9ifLUC7N4vu_hls1f24JfVuejHu_TcjNQeSz7cyUC5ACmn_IbiZ-__yL4Bsp6e5Q</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2198315524</pqid></control><display><type>article</type><title>CT-based machine learning model to predict the Fuhrman nuclear grade of clear cell renal cell carcinoma</title><source>SpringerLink Journals</source><creator>Lin, Fan ; Cui, En-Ming ; Lei, Yi ; Luo, Liang-ping</creator><creatorcontrib>Lin, Fan ; Cui, En-Ming ; Lei, Yi ; Luo, Liang-ping</creatorcontrib><description>Purpose
To predict the Fuhrman grade of clear cell renal cell carcinoma (ccRCC) with a machine learning classifier based on single- or three-phase computed tomography (CT) images.
Materials and methods
Patients with pathologically proven ccRCC from February 1, 2009 to September 31, 2018 who were not treated were retrospectively collected for machine learning-based analysis. The texture features were extracted and ranked from precontrast phase (PCP), corticomedullary phase (CMP), nephrographic phase (NP) and three-phase CT images, and open-source gradient boosting from the decision tree library of CatBoost was used to establish a machine learning classifier to differentiate low- from high-grade ccRCC. The performances of machine learning classifiers based on features from single- and three-phase CT images were compared with each other.
Results
A total of 231 patients with 232 pathologically proven ccRCC lesions were retrospectively collected. 35, 36, 41, and 22 Features were extracted and ranked from PCP, CMP, NP, and three-phase CT images, respectively. The machine learning model based on three-phase CT images [area under the ROC curve (AUC) = 0.87] achieved the best diagnostic performance for differentiating low- from high-grade ccRCC, followed by single-phase NP (AUC = 0.84), CMP (AUC = 0.80), and PCP images (AUC = 0.82).
Conclusion
Machine learning classifiers can be promising noninvasive techniques to differentiate low- and high-Fuhrman nuclear grade ccRCC, and classifiers based on three-phase CT images are superior to those based on features from each single phase.</description><identifier>ISSN: 2366-004X</identifier><identifier>ISSN: 2366-0058</identifier><identifier>EISSN: 2366-0058</identifier><identifier>DOI: 10.1007/s00261-019-01992-7</identifier><identifier>PMID: 30919041</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Artificial intelligence ; Bladder ; CARCINOMAS ; Classifiers ; Clear cell-type renal cell carcinoma ; Computed tomography ; COMPUTERIZED TOMOGRAPHY ; DECISION TREE ANALYSIS ; Decision trees ; DIAGNOSIS ; Diagnostic systems ; Feature extraction ; Gastroenterology ; Hepatology ; Imaging ; Kidney cancer ; KIDNEYS ; LEARNING ; Learning algorithms ; Lesions ; Machine learning ; Mathematical models ; Medical imaging ; Medicine ; Medicine & Public Health ; PATIENTS ; Quality ; Radiology ; RADIOLOGY AND NUCLEAR MEDICINE ; Retroperitoneum ; Tomography ; Ureters</subject><ispartof>Abdominal imaging, 2019-07, Vol.44 (7), p.2528-2534</ispartof><rights>Springer Science+Business Media, LLC, part of Springer Nature 2019</rights><rights>Abdominal Radiology is a copyright of Springer, (2019). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c469t-57b24f32521bebdefc3099a620599557a37cbeb48017ff0c7a1fa1ac7db494ba3</citedby><cites>FETCH-LOGICAL-c469t-57b24f32521bebdefc3099a620599557a37cbeb48017ff0c7a1fa1ac7db494ba3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00261-019-01992-7$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00261-019-01992-7$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>230,314,776,780,881,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30919041$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/biblio/22922979$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Lin, Fan</creatorcontrib><creatorcontrib>Cui, En-Ming</creatorcontrib><creatorcontrib>Lei, Yi</creatorcontrib><creatorcontrib>Luo, Liang-ping</creatorcontrib><title>CT-based machine learning model to predict the Fuhrman nuclear grade of clear cell renal cell carcinoma</title><title>Abdominal imaging</title><addtitle>Abdom Radiol</addtitle><addtitle>Abdom Radiol (NY)</addtitle><description>Purpose
To predict the Fuhrman grade of clear cell renal cell carcinoma (ccRCC) with a machine learning classifier based on single- or three-phase computed tomography (CT) images.
Materials and methods
Patients with pathologically proven ccRCC from February 1, 2009 to September 31, 2018 who were not treated were retrospectively collected for machine learning-based analysis. The texture features were extracted and ranked from precontrast phase (PCP), corticomedullary phase (CMP), nephrographic phase (NP) and three-phase CT images, and open-source gradient boosting from the decision tree library of CatBoost was used to establish a machine learning classifier to differentiate low- from high-grade ccRCC. The performances of machine learning classifiers based on features from single- and three-phase CT images were compared with each other.
Results
A total of 231 patients with 232 pathologically proven ccRCC lesions were retrospectively collected. 35, 36, 41, and 22 Features were extracted and ranked from PCP, CMP, NP, and three-phase CT images, respectively. The machine learning model based on three-phase CT images [area under the ROC curve (AUC) = 0.87] achieved the best diagnostic performance for differentiating low- from high-grade ccRCC, followed by single-phase NP (AUC = 0.84), CMP (AUC = 0.80), and PCP images (AUC = 0.82).
Conclusion
Machine learning classifiers can be promising noninvasive techniques to differentiate low- and high-Fuhrman nuclear grade ccRCC, and classifiers based on three-phase CT images are superior to those based on features from each single phase.</description><subject>Artificial intelligence</subject><subject>Bladder</subject><subject>CARCINOMAS</subject><subject>Classifiers</subject><subject>Clear cell-type renal cell carcinoma</subject><subject>Computed tomography</subject><subject>COMPUTERIZED TOMOGRAPHY</subject><subject>DECISION TREE ANALYSIS</subject><subject>Decision trees</subject><subject>DIAGNOSIS</subject><subject>Diagnostic systems</subject><subject>Feature extraction</subject><subject>Gastroenterology</subject><subject>Hepatology</subject><subject>Imaging</subject><subject>Kidney cancer</subject><subject>KIDNEYS</subject><subject>LEARNING</subject><subject>Learning algorithms</subject><subject>Lesions</subject><subject>Machine learning</subject><subject>Mathematical models</subject><subject>Medical imaging</subject><subject>Medicine</subject><subject>Medicine & Public Health</subject><subject>PATIENTS</subject><subject>Quality</subject><subject>Radiology</subject><subject>RADIOLOGY AND NUCLEAR MEDICINE</subject><subject>Retroperitoneum</subject><subject>Tomography</subject><subject>Ureters</subject><issn>2366-004X</issn><issn>2366-0058</issn><issn>2366-0058</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNp9kU1r3DAQhkVpaEKSP9BDEeTSi9ORbFmrY1jyBYFeUuhNjOXxroMtbSX7kH8f7TrZ3AoSGjHPvDPSy9h3AdcCQP9KALIWBQiz30YW-gs7k2VdFwBq9fUYV39P2WVKLwAgaiWEVN_YaQlGGKjEGdusn4sGE7V8RLftPfGBMPreb_gYWhr4FPguUtu7iU9b4nfzNo7ouZ_dHuSbiC3x0PHl6mgYeCSPwxI6jK73YcQLdtLhkOjy_Txnf-5un9cPxdPv-8f1zVPhqtpMhdKNrLpSKikaalrqXB7VYC1BGaOUxlK7nKhWIHTXgdMoOhTodNtUpmqwPGdXi25IU2-T6ydyWxe8JzdZKU1e2mTq50LtYvg3U5rs2Kf9wOgpzMnK_KNipaSsPgWP6EuYY37ggVqVQqkDJRfKxZBSpM7uYj9ifLUC7N4vu_hls1f24JfVuejHu_TcjNQeSz7cyUC5ACmn_IbiZ-__yL4Bsp6e5Q</recordid><startdate>20190701</startdate><enddate>20190701</enddate><creator>Lin, Fan</creator><creator>Cui, En-Ming</creator><creator>Lei, Yi</creator><creator>Luo, Liang-ping</creator><general>Springer US</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7RV</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>JQ2</scope><scope>K7-</scope><scope>K9.</scope><scope>KB0</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>M7Z</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><scope>OTOTI</scope></search><sort><creationdate>20190701</creationdate><title>CT-based machine learning model to predict the Fuhrman nuclear grade of clear cell renal cell carcinoma</title><author>Lin, Fan ; Cui, En-Ming ; Lei, Yi ; Luo, Liang-ping</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c469t-57b24f32521bebdefc3099a620599557a37cbeb48017ff0c7a1fa1ac7db494ba3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Artificial intelligence</topic><topic>Bladder</topic><topic>CARCINOMAS</topic><topic>Classifiers</topic><topic>Clear cell-type renal cell carcinoma</topic><topic>Computed tomography</topic><topic>COMPUTERIZED TOMOGRAPHY</topic><topic>DECISION TREE ANALYSIS</topic><topic>Decision trees</topic><topic>DIAGNOSIS</topic><topic>Diagnostic systems</topic><topic>Feature extraction</topic><topic>Gastroenterology</topic><topic>Hepatology</topic><topic>Imaging</topic><topic>Kidney cancer</topic><topic>KIDNEYS</topic><topic>LEARNING</topic><topic>Learning algorithms</topic><topic>Lesions</topic><topic>Machine learning</topic><topic>Mathematical models</topic><topic>Medical imaging</topic><topic>Medicine</topic><topic>Medicine & Public Health</topic><topic>PATIENTS</topic><topic>Quality</topic><topic>Radiology</topic><topic>RADIOLOGY AND NUCLEAR MEDICINE</topic><topic>Retroperitoneum</topic><topic>Tomography</topic><topic>Ureters</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lin, Fan</creatorcontrib><creatorcontrib>Cui, En-Ming</creatorcontrib><creatorcontrib>Lei, Yi</creatorcontrib><creatorcontrib>Luo, Liang-ping</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Nursing & Allied Health Database</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Advanced Technologies & Aerospace Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection (ProQuest)</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Computer Science Collection</collection><collection>Computer Science Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biochemistry Abstracts 1</collection><collection>Nursing & Allied Health Premium</collection><collection>Advanced Technologies & Aerospace Database</collection><collection>ProQuest Advanced Technologies & Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV</collection><jtitle>Abdominal imaging</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lin, Fan</au><au>Cui, En-Ming</au><au>Lei, Yi</au><au>Luo, Liang-ping</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>CT-based machine learning model to predict the Fuhrman nuclear grade of clear cell renal cell carcinoma</atitle><jtitle>Abdominal imaging</jtitle><stitle>Abdom Radiol</stitle><addtitle>Abdom Radiol (NY)</addtitle><date>2019-07-01</date><risdate>2019</risdate><volume>44</volume><issue>7</issue><spage>2528</spage><epage>2534</epage><pages>2528-2534</pages><issn>2366-004X</issn><issn>2366-0058</issn><eissn>2366-0058</eissn><abstract>Purpose
To predict the Fuhrman grade of clear cell renal cell carcinoma (ccRCC) with a machine learning classifier based on single- or three-phase computed tomography (CT) images.
Materials and methods
Patients with pathologically proven ccRCC from February 1, 2009 to September 31, 2018 who were not treated were retrospectively collected for machine learning-based analysis. The texture features were extracted and ranked from precontrast phase (PCP), corticomedullary phase (CMP), nephrographic phase (NP) and three-phase CT images, and open-source gradient boosting from the decision tree library of CatBoost was used to establish a machine learning classifier to differentiate low- from high-grade ccRCC. The performances of machine learning classifiers based on features from single- and three-phase CT images were compared with each other.
Results
A total of 231 patients with 232 pathologically proven ccRCC lesions were retrospectively collected. 35, 36, 41, and 22 Features were extracted and ranked from PCP, CMP, NP, and three-phase CT images, respectively. The machine learning model based on three-phase CT images [area under the ROC curve (AUC) = 0.87] achieved the best diagnostic performance for differentiating low- from high-grade ccRCC, followed by single-phase NP (AUC = 0.84), CMP (AUC = 0.80), and PCP images (AUC = 0.82).
Conclusion
Machine learning classifiers can be promising noninvasive techniques to differentiate low- and high-Fuhrman nuclear grade ccRCC, and classifiers based on three-phase CT images are superior to those based on features from each single phase.</abstract><cop>New York</cop><pub>Springer US</pub><pmid>30919041</pmid><doi>10.1007/s00261-019-01992-7</doi><tpages>7</tpages></addata></record> |
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subjects | Artificial intelligence Bladder CARCINOMAS Classifiers Clear cell-type renal cell carcinoma Computed tomography COMPUTERIZED TOMOGRAPHY DECISION TREE ANALYSIS Decision trees DIAGNOSIS Diagnostic systems Feature extraction Gastroenterology Hepatology Imaging Kidney cancer KIDNEYS LEARNING Learning algorithms Lesions Machine learning Mathematical models Medical imaging Medicine Medicine & Public Health PATIENTS Quality Radiology RADIOLOGY AND NUCLEAR MEDICINE Retroperitoneum Tomography Ureters |
title | CT-based machine learning model to predict the Fuhrman nuclear grade of clear cell renal cell carcinoma |
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