Electron accommodation dynamics in the DNA base thymine
The dynamics of electron attachment to the DNA base thymine are investigated using femtosecond time-resolved photoelectron imaging of the gas phase iodide-thymine (I(-)T) complex. An ultraviolet pump pulse ejects an electron from the iodide and prepares an iodine-thymine temporary negative ion that...
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Veröffentlicht in: | The Journal of chemical physics 2015-07, Vol.143 (2), p.024312-024312 |
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container_title | The Journal of chemical physics |
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creator | King, Sarah B Stephansen, Anne B Yokoi, Yuki Yandell, Margaret A Kunin, Alice Takayanagi, Toshiyuki Neumark, Daniel M |
description | The dynamics of electron attachment to the DNA base thymine are investigated using femtosecond time-resolved photoelectron imaging of the gas phase iodide-thymine (I(-)T) complex. An ultraviolet pump pulse ejects an electron from the iodide and prepares an iodine-thymine temporary negative ion that is photodetached with a near-IR probe pulse. The resulting photoelectrons are analyzed with velocity-map imaging. At excitation energies ranging from -120 meV to +90 meV with respect to the vertical detachment energy (VDE) of 4.05 eV for I(-)T, both the dipole-bound and valence-bound negative ions of thymine are observed. A slightly longer rise time for the valence-bound state than the dipole-bound state suggests that some of the dipole-bound anions convert to valence-bound species. No evidence is seen for a dipole-bound anion of thymine at higher excitation energies, in the range of 0.6 eV above the I(-)T VDE, which suggests that if the dipole-bound anion acts as a "doorway" to the valence-bound anion, it only does so at excitation energies near the VDE of the complex. |
doi_str_mv | 10.1063/1.4923343 |
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An ultraviolet pump pulse ejects an electron from the iodide and prepares an iodine-thymine temporary negative ion that is photodetached with a near-IR probe pulse. The resulting photoelectrons are analyzed with velocity-map imaging. At excitation energies ranging from -120 meV to +90 meV with respect to the vertical detachment energy (VDE) of 4.05 eV for I(-)T, both the dipole-bound and valence-bound negative ions of thymine are observed. A slightly longer rise time for the valence-bound state than the dipole-bound state suggests that some of the dipole-bound anions convert to valence-bound species. No evidence is seen for a dipole-bound anion of thymine at higher excitation energies, in the range of 0.6 eV above the I(-)T VDE, which suggests that if the dipole-bound anion acts as a "doorway" to the valence-bound anion, it only does so at excitation energies near the VDE of the complex.</description><identifier>ISSN: 0021-9606</identifier><identifier>EISSN: 1089-7690</identifier><identifier>DOI: 10.1063/1.4923343</identifier><identifier>PMID: 26178110</identifier><language>eng</language><publisher>United States: American Institute of Physics</publisher><subject>ANIONS ; Anions - chemistry ; BOUND STATE ; Deoxyribonucleic acid ; DIPOLES ; DNA ; DNA - chemistry ; Ejection ; ELECTRON ATTACHMENT ; ELECTRONS ; EV RANGE ; EXCITATION ; Gases - chemistry ; INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY ; IODIDES ; IODINE ; MEV RANGE ; Negative ions ; Photoelectron Spectroscopy ; Photoelectrons ; PULSES ; Quaternary Ammonium Compounds - chemistry ; THYMINE ; Thymine - chemistry ; TIME RESOLUTION ; Uracil - chemistry</subject><ispartof>The Journal of chemical physics, 2015-07, Vol.143 (2), p.024312-024312</ispartof><rights>2015 AIP Publishing LLC.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c407t-3abb54c6ea911346701e4dd3ada10f98a1b3ed068121af4fdac3d82a413a4d263</citedby><cites>FETCH-LOGICAL-c407t-3abb54c6ea911346701e4dd3ada10f98a1b3ed068121af4fdac3d82a413a4d263</cites><orcidid>0000-0002-3762-9473 ; 0000-0001-8730-002X ; 0000-0002-2312-9865 ; 0000-0003-0274-9894 ; 0000-0002-3002-8317</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,776,780,881,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26178110$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/biblio/22490901$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>King, Sarah B</creatorcontrib><creatorcontrib>Stephansen, Anne B</creatorcontrib><creatorcontrib>Yokoi, Yuki</creatorcontrib><creatorcontrib>Yandell, Margaret A</creatorcontrib><creatorcontrib>Kunin, Alice</creatorcontrib><creatorcontrib>Takayanagi, Toshiyuki</creatorcontrib><creatorcontrib>Neumark, Daniel M</creatorcontrib><title>Electron accommodation dynamics in the DNA base thymine</title><title>The Journal of chemical physics</title><addtitle>J Chem Phys</addtitle><description>The dynamics of electron attachment to the DNA base thymine are investigated using femtosecond time-resolved photoelectron imaging of the gas phase iodide-thymine (I(-)T) complex. An ultraviolet pump pulse ejects an electron from the iodide and prepares an iodine-thymine temporary negative ion that is photodetached with a near-IR probe pulse. The resulting photoelectrons are analyzed with velocity-map imaging. At excitation energies ranging from -120 meV to +90 meV with respect to the vertical detachment energy (VDE) of 4.05 eV for I(-)T, both the dipole-bound and valence-bound negative ions of thymine are observed. A slightly longer rise time for the valence-bound state than the dipole-bound state suggests that some of the dipole-bound anions convert to valence-bound species. No evidence is seen for a dipole-bound anion of thymine at higher excitation energies, in the range of 0.6 eV above the I(-)T VDE, which suggests that if the dipole-bound anion acts as a "doorway" to the valence-bound anion, it only does so at excitation energies near the VDE of the complex.</description><subject>ANIONS</subject><subject>Anions - chemistry</subject><subject>BOUND STATE</subject><subject>Deoxyribonucleic acid</subject><subject>DIPOLES</subject><subject>DNA</subject><subject>DNA - chemistry</subject><subject>Ejection</subject><subject>ELECTRON ATTACHMENT</subject><subject>ELECTRONS</subject><subject>EV RANGE</subject><subject>EXCITATION</subject><subject>Gases - chemistry</subject><subject>INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY</subject><subject>IODIDES</subject><subject>IODINE</subject><subject>MEV RANGE</subject><subject>Negative ions</subject><subject>Photoelectron Spectroscopy</subject><subject>Photoelectrons</subject><subject>PULSES</subject><subject>Quaternary Ammonium Compounds - chemistry</subject><subject>THYMINE</subject><subject>Thymine - chemistry</subject><subject>TIME RESOLUTION</subject><subject>Uracil - chemistry</subject><issn>0021-9606</issn><issn>1089-7690</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpFkD1PwzAQhi0EoqUw8AdQJBYYUu5s14nHqpQPqYIFZsuxHTVVYpc4GfrvSdVSptMrPXru7iXkFmGKINgTTrmkjHF2RsYIuUwzIeGcjAEoplKAGJGrGDcAgBnll2REBWY5IoxJtqyd6drgE21MaJpgdVcNye68bioTk8on3dolzx_zpNDRDWHXVN5dk4tS19HdHOeEfL8svxZv6erz9X0xX6WGQ9alTBfFjBvhtERkXGSAjlvLtNUIpcw1FsxZEDlS1CUvrTbM5lRzZJpbKtiE3B-8IXaViqbqnFmb4P1wtaKUS5CAA_VwoLZt-Old7FRTRePqWnsX-qhQyIwim1H5Lzyhm9C3fvhBUaQcMZdiv_bxQJk2xNi6Um3bqtHtTiGofecK1bHzgb07GvuicfZE_pXMfgGqhnhL</recordid><startdate>20150714</startdate><enddate>20150714</enddate><creator>King, Sarah B</creator><creator>Stephansen, Anne B</creator><creator>Yokoi, Yuki</creator><creator>Yandell, Margaret A</creator><creator>Kunin, Alice</creator><creator>Takayanagi, Toshiyuki</creator><creator>Neumark, Daniel M</creator><general>American Institute of Physics</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>H8D</scope><scope>L7M</scope><scope>7X8</scope><scope>OTOTI</scope><orcidid>https://orcid.org/0000-0002-3762-9473</orcidid><orcidid>https://orcid.org/0000-0001-8730-002X</orcidid><orcidid>https://orcid.org/0000-0002-2312-9865</orcidid><orcidid>https://orcid.org/0000-0003-0274-9894</orcidid><orcidid>https://orcid.org/0000-0002-3002-8317</orcidid></search><sort><creationdate>20150714</creationdate><title>Electron accommodation dynamics in the DNA base thymine</title><author>King, Sarah B ; Stephansen, Anne B ; Yokoi, Yuki ; Yandell, Margaret A ; Kunin, Alice ; Takayanagi, Toshiyuki ; Neumark, Daniel M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c407t-3abb54c6ea911346701e4dd3ada10f98a1b3ed068121af4fdac3d82a413a4d263</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>ANIONS</topic><topic>Anions - chemistry</topic><topic>BOUND STATE</topic><topic>Deoxyribonucleic acid</topic><topic>DIPOLES</topic><topic>DNA</topic><topic>DNA - chemistry</topic><topic>Ejection</topic><topic>ELECTRON ATTACHMENT</topic><topic>ELECTRONS</topic><topic>EV RANGE</topic><topic>EXCITATION</topic><topic>Gases - chemistry</topic><topic>INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY</topic><topic>IODIDES</topic><topic>IODINE</topic><topic>MEV RANGE</topic><topic>Negative ions</topic><topic>Photoelectron Spectroscopy</topic><topic>Photoelectrons</topic><topic>PULSES</topic><topic>Quaternary Ammonium Compounds - chemistry</topic><topic>THYMINE</topic><topic>Thymine - chemistry</topic><topic>TIME RESOLUTION</topic><topic>Uracil - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>King, Sarah B</creatorcontrib><creatorcontrib>Stephansen, Anne B</creatorcontrib><creatorcontrib>Yokoi, Yuki</creatorcontrib><creatorcontrib>Yandell, Margaret A</creatorcontrib><creatorcontrib>Kunin, Alice</creatorcontrib><creatorcontrib>Takayanagi, Toshiyuki</creatorcontrib><creatorcontrib>Neumark, Daniel M</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>Aerospace Database</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV</collection><jtitle>The Journal of chemical physics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>King, Sarah B</au><au>Stephansen, Anne B</au><au>Yokoi, Yuki</au><au>Yandell, Margaret A</au><au>Kunin, Alice</au><au>Takayanagi, Toshiyuki</au><au>Neumark, Daniel M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Electron accommodation dynamics in the DNA base thymine</atitle><jtitle>The Journal of chemical physics</jtitle><addtitle>J Chem Phys</addtitle><date>2015-07-14</date><risdate>2015</risdate><volume>143</volume><issue>2</issue><spage>024312</spage><epage>024312</epage><pages>024312-024312</pages><issn>0021-9606</issn><eissn>1089-7690</eissn><abstract>The dynamics of electron attachment to the DNA base thymine are investigated using femtosecond time-resolved photoelectron imaging of the gas phase iodide-thymine (I(-)T) complex. An ultraviolet pump pulse ejects an electron from the iodide and prepares an iodine-thymine temporary negative ion that is photodetached with a near-IR probe pulse. The resulting photoelectrons are analyzed with velocity-map imaging. At excitation energies ranging from -120 meV to +90 meV with respect to the vertical detachment energy (VDE) of 4.05 eV for I(-)T, both the dipole-bound and valence-bound negative ions of thymine are observed. A slightly longer rise time for the valence-bound state than the dipole-bound state suggests that some of the dipole-bound anions convert to valence-bound species. No evidence is seen for a dipole-bound anion of thymine at higher excitation energies, in the range of 0.6 eV above the I(-)T VDE, which suggests that if the dipole-bound anion acts as a "doorway" to the valence-bound anion, it only does so at excitation energies near the VDE of the complex.</abstract><cop>United States</cop><pub>American Institute of Physics</pub><pmid>26178110</pmid><doi>10.1063/1.4923343</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0002-3762-9473</orcidid><orcidid>https://orcid.org/0000-0001-8730-002X</orcidid><orcidid>https://orcid.org/0000-0002-2312-9865</orcidid><orcidid>https://orcid.org/0000-0003-0274-9894</orcidid><orcidid>https://orcid.org/0000-0002-3002-8317</orcidid></addata></record> |
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subjects | ANIONS Anions - chemistry BOUND STATE Deoxyribonucleic acid DIPOLES DNA DNA - chemistry Ejection ELECTRON ATTACHMENT ELECTRONS EV RANGE EXCITATION Gases - chemistry INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY IODIDES IODINE MEV RANGE Negative ions Photoelectron Spectroscopy Photoelectrons PULSES Quaternary Ammonium Compounds - chemistry THYMINE Thymine - chemistry TIME RESOLUTION Uracil - chemistry |
title | Electron accommodation dynamics in the DNA base thymine |
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