Polymer-based microfluidic device for on-chip counter-diffusive crystallization and in situ X-ray crystallography at room temperature
Proteins are long chains of amino acid residues that perform a myriad of functions in living organisms, including enzymatic reactions, signalling, and maintaining structural integrity. Protein function is determined directly by the protein structure. X-ray crystallography is the primary technique fo...
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Veröffentlicht in: | Lab on a chip 2023-04, Vol.23 (8), p.2075-2090 |
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creator | Saha, Sarthak Özden, Can Samkutty, Alfred Russi, Silvia Cohen, Aina Stratton, Margaret M Perry, Sarah L |
description | Proteins are long chains of amino acid residues that perform a myriad of functions in living organisms, including enzymatic reactions, signalling, and maintaining structural integrity. Protein function is determined directly by the protein structure. X-ray crystallography is the primary technique for determining the 3D structure of proteins, and facilitates understanding the effects of protein structure on function. The first step towards structure determination is crystallizing the protein of interest. We have developed a centrifugally-actuated microfluidic device that incorporates the fluid handling and metering necessary for protein crystallization. Liquid handling takes advantage of surface forces to control fluid flow and enable metering, without the need for any fluidic or pump connections. Our approach requires only the simple steps of pipetting the crystallization reagents into the device followed by either spinning or shaking to set up counter-diffusive protein crystallization trials. The use of thin, UV-curable polymers with a high level of X-ray transparency allows for
X-ray crystallography, eliminating the manual handling of fragile protein crystals and streamlining the process of protein structure analysis. We demonstrate the utility of our device using hen egg white lysozyme as a model system, followed by the crystallization and
, room temperature structural analysis of the hub domain of calcium-calmodulin dependent kinase II (CaMKIIβ). |
doi_str_mv | 10.1039/d2lc01194h |
format | Article |
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X-ray crystallography, eliminating the manual handling of fragile protein crystals and streamlining the process of protein structure analysis. We demonstrate the utility of our device using hen egg white lysozyme as a model system, followed by the crystallization and
, room temperature structural analysis of the hub domain of calcium-calmodulin dependent kinase II (CaMKIIβ).</description><identifier>ISSN: 1473-0197</identifier><identifier>ISSN: 1473-0189</identifier><identifier>EISSN: 1473-0189</identifier><identifier>DOI: 10.1039/d2lc01194h</identifier><identifier>PMID: 36942575</identifier><language>eng</language><publisher>England: Royal Society of Chemistry</publisher><subject>Amino acids ; Calmodulin ; Crystallization ; Crystallography ; Crystallography, X-Ray ; Fluid flow ; Handling ; Kinases ; Lab-On-A-Chip Devices ; Lysozyme ; Microfluidic devices ; Polymers ; Proteins ; Proteins - chemistry ; Reagents ; Room temperature ; Shaking ; Streamlining ; Structural analysis ; Structural integrity ; Temperature ; Ultraviolet radiation</subject><ispartof>Lab on a chip, 2023-04, Vol.23 (8), p.2075-2090</ispartof><rights>Copyright Royal Society of Chemistry 2023</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c378t-af1589be7d5ee0642d9c575b0187164dad91e47eaa8abfa8234e7bf4d761e2123</citedby><cites>FETCH-LOGICAL-c378t-af1589be7d5ee0642d9c575b0187164dad91e47eaa8abfa8234e7bf4d761e2123</cites><orcidid>0000-0003-2301-6710 ; 0000-0002-5673-878X ; 0000-0002-6734-4436 ; 0000-0002-9666-1465 ; 0000-0003-2686-9022 ; 0000-0003-2414-9427 ; 0000000267344436 ; 0000000326869022 ; 0000000323016710 ; 000000025673878X ; 0000000324149427 ; 0000000296661465</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,885,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36942575$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/biblio/1962706$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Saha, Sarthak</creatorcontrib><creatorcontrib>Özden, Can</creatorcontrib><creatorcontrib>Samkutty, Alfred</creatorcontrib><creatorcontrib>Russi, Silvia</creatorcontrib><creatorcontrib>Cohen, Aina</creatorcontrib><creatorcontrib>Stratton, Margaret M</creatorcontrib><creatorcontrib>Perry, Sarah L</creatorcontrib><title>Polymer-based microfluidic device for on-chip counter-diffusive crystallization and in situ X-ray crystallography at room temperature</title><title>Lab on a chip</title><addtitle>Lab Chip</addtitle><description>Proteins are long chains of amino acid residues that perform a myriad of functions in living organisms, including enzymatic reactions, signalling, and maintaining structural integrity. Protein function is determined directly by the protein structure. X-ray crystallography is the primary technique for determining the 3D structure of proteins, and facilitates understanding the effects of protein structure on function. The first step towards structure determination is crystallizing the protein of interest. We have developed a centrifugally-actuated microfluidic device that incorporates the fluid handling and metering necessary for protein crystallization. Liquid handling takes advantage of surface forces to control fluid flow and enable metering, without the need for any fluidic or pump connections. Our approach requires only the simple steps of pipetting the crystallization reagents into the device followed by either spinning or shaking to set up counter-diffusive protein crystallization trials. The use of thin, UV-curable polymers with a high level of X-ray transparency allows for
X-ray crystallography, eliminating the manual handling of fragile protein crystals and streamlining the process of protein structure analysis. We demonstrate the utility of our device using hen egg white lysozyme as a model system, followed by the crystallization and
, room temperature structural analysis of the hub domain of calcium-calmodulin dependent kinase II (CaMKIIβ).</description><subject>Amino acids</subject><subject>Calmodulin</subject><subject>Crystallization</subject><subject>Crystallography</subject><subject>Crystallography, X-Ray</subject><subject>Fluid flow</subject><subject>Handling</subject><subject>Kinases</subject><subject>Lab-On-A-Chip Devices</subject><subject>Lysozyme</subject><subject>Microfluidic devices</subject><subject>Polymers</subject><subject>Proteins</subject><subject>Proteins - chemistry</subject><subject>Reagents</subject><subject>Room temperature</subject><subject>Shaking</subject><subject>Streamlining</subject><subject>Structural analysis</subject><subject>Structural integrity</subject><subject>Temperature</subject><subject>Ultraviolet radiation</subject><issn>1473-0197</issn><issn>1473-0189</issn><issn>1473-0189</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpd0UuL1TAcBfAiivPQjR9Agm4GoZpXm2Yp18cIF3Sh4K6kyT_eDG1S8xioe7-3Ge94F66SxY8TTk7TPCP4NcFMvjF01pgQyQ8PmnPCBWsxGeTD012Ks-YipRuMScf74XFzxnrJaSe68-b3lzBvC8R2UgkMWpyOwc7FGaeRgVunAdkQUfCtPrgV6VB8rto4a0tyt4B03FJW8-x-qeyCR8ob5DxKLhf0vY1qO4nwI6r1sCGVUQxhQRmWFaLKJcKT5pFVc4Kn9-dl8-3D-6-763b_-eOn3dt9q5kYcqss6QY5gTAdAO45NVLXFlOtK0jPjTKSABeg1KAmqwbKOIjJciN6ApRQdtm8OOaGlN2YtMugDzp4DzqPRPZU4L6iqyNaY_hZIOVxcUnDPCsPoaSRikHWZDl0lb78j96EEn2tUJWUTPKO3b366qjq36YUwY5rdIuK20jweLfg-I7ud38XvK74-X1kmRYwJ_pvMvYHz1qYkw</recordid><startdate>20230412</startdate><enddate>20230412</enddate><creator>Saha, Sarthak</creator><creator>Özden, Can</creator><creator>Samkutty, Alfred</creator><creator>Russi, Silvia</creator><creator>Cohen, Aina</creator><creator>Stratton, Margaret M</creator><creator>Perry, Sarah L</creator><general>Royal Society of Chemistry</general><general>Royal Society of Chemistry (RSC)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SP</scope><scope>7TB</scope><scope>7U5</scope><scope>8FD</scope><scope>FR3</scope><scope>L7M</scope><scope>7X8</scope><scope>OTOTI</scope><orcidid>https://orcid.org/0000-0003-2301-6710</orcidid><orcidid>https://orcid.org/0000-0002-5673-878X</orcidid><orcidid>https://orcid.org/0000-0002-6734-4436</orcidid><orcidid>https://orcid.org/0000-0002-9666-1465</orcidid><orcidid>https://orcid.org/0000-0003-2686-9022</orcidid><orcidid>https://orcid.org/0000-0003-2414-9427</orcidid><orcidid>https://orcid.org/0000000267344436</orcidid><orcidid>https://orcid.org/0000000326869022</orcidid><orcidid>https://orcid.org/0000000323016710</orcidid><orcidid>https://orcid.org/000000025673878X</orcidid><orcidid>https://orcid.org/0000000324149427</orcidid><orcidid>https://orcid.org/0000000296661465</orcidid></search><sort><creationdate>20230412</creationdate><title>Polymer-based microfluidic device for on-chip counter-diffusive crystallization and in situ X-ray crystallography at room temperature</title><author>Saha, Sarthak ; Özden, Can ; Samkutty, Alfred ; Russi, Silvia ; Cohen, Aina ; Stratton, Margaret M ; Perry, Sarah L</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c378t-af1589be7d5ee0642d9c575b0187164dad91e47eaa8abfa8234e7bf4d761e2123</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Amino acids</topic><topic>Calmodulin</topic><topic>Crystallization</topic><topic>Crystallography</topic><topic>Crystallography, X-Ray</topic><topic>Fluid flow</topic><topic>Handling</topic><topic>Kinases</topic><topic>Lab-On-A-Chip Devices</topic><topic>Lysozyme</topic><topic>Microfluidic devices</topic><topic>Polymers</topic><topic>Proteins</topic><topic>Proteins - chemistry</topic><topic>Reagents</topic><topic>Room temperature</topic><topic>Shaking</topic><topic>Streamlining</topic><topic>Structural analysis</topic><topic>Structural integrity</topic><topic>Temperature</topic><topic>Ultraviolet radiation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Saha, Sarthak</creatorcontrib><creatorcontrib>Özden, Can</creatorcontrib><creatorcontrib>Samkutty, Alfred</creatorcontrib><creatorcontrib>Russi, Silvia</creatorcontrib><creatorcontrib>Cohen, Aina</creatorcontrib><creatorcontrib>Stratton, Margaret M</creatorcontrib><creatorcontrib>Perry, Sarah L</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Electronics & Communications Abstracts</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV</collection><jtitle>Lab on a chip</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Saha, Sarthak</au><au>Özden, Can</au><au>Samkutty, Alfred</au><au>Russi, Silvia</au><au>Cohen, Aina</au><au>Stratton, Margaret M</au><au>Perry, Sarah L</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Polymer-based microfluidic device for on-chip counter-diffusive crystallization and in situ X-ray crystallography at room temperature</atitle><jtitle>Lab on a chip</jtitle><addtitle>Lab Chip</addtitle><date>2023-04-12</date><risdate>2023</risdate><volume>23</volume><issue>8</issue><spage>2075</spage><epage>2090</epage><pages>2075-2090</pages><issn>1473-0197</issn><issn>1473-0189</issn><eissn>1473-0189</eissn><abstract>Proteins are long chains of amino acid residues that perform a myriad of functions in living organisms, including enzymatic reactions, signalling, and maintaining structural integrity. Protein function is determined directly by the protein structure. X-ray crystallography is the primary technique for determining the 3D structure of proteins, and facilitates understanding the effects of protein structure on function. The first step towards structure determination is crystallizing the protein of interest. We have developed a centrifugally-actuated microfluidic device that incorporates the fluid handling and metering necessary for protein crystallization. Liquid handling takes advantage of surface forces to control fluid flow and enable metering, without the need for any fluidic or pump connections. Our approach requires only the simple steps of pipetting the crystallization reagents into the device followed by either spinning or shaking to set up counter-diffusive protein crystallization trials. The use of thin, UV-curable polymers with a high level of X-ray transparency allows for
X-ray crystallography, eliminating the manual handling of fragile protein crystals and streamlining the process of protein structure analysis. We demonstrate the utility of our device using hen egg white lysozyme as a model system, followed by the crystallization and
, room temperature structural analysis of the hub domain of calcium-calmodulin dependent kinase II (CaMKIIβ).</abstract><cop>England</cop><pub>Royal Society of Chemistry</pub><pmid>36942575</pmid><doi>10.1039/d2lc01194h</doi><tpages>16</tpages><orcidid>https://orcid.org/0000-0003-2301-6710</orcidid><orcidid>https://orcid.org/0000-0002-5673-878X</orcidid><orcidid>https://orcid.org/0000-0002-6734-4436</orcidid><orcidid>https://orcid.org/0000-0002-9666-1465</orcidid><orcidid>https://orcid.org/0000-0003-2686-9022</orcidid><orcidid>https://orcid.org/0000-0003-2414-9427</orcidid><orcidid>https://orcid.org/0000000267344436</orcidid><orcidid>https://orcid.org/0000000326869022</orcidid><orcidid>https://orcid.org/0000000323016710</orcidid><orcidid>https://orcid.org/000000025673878X</orcidid><orcidid>https://orcid.org/0000000324149427</orcidid><orcidid>https://orcid.org/0000000296661465</orcidid><oa>free_for_read</oa></addata></record> |
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source | MEDLINE; Royal Society Of Chemistry Journals 2008-; Alma/SFX Local Collection |
subjects | Amino acids Calmodulin Crystallization Crystallography Crystallography, X-Ray Fluid flow Handling Kinases Lab-On-A-Chip Devices Lysozyme Microfluidic devices Polymers Proteins Proteins - chemistry Reagents Room temperature Shaking Streamlining Structural analysis Structural integrity Temperature Ultraviolet radiation |
title | Polymer-based microfluidic device for on-chip counter-diffusive crystallization and in situ X-ray crystallography at room temperature |
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