Chain elongators, friends, and foes

[Display omitted] •A meta-analysis of chain elongation microbiomes shows community divergence.•Key microbiome members are often not classified or characterized.•Isolated chain elongators do not represent suspected catalysts in many microbiomes.•Interactions between chain elongators and other communi...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Current opinion in biotechnology 2021-02, Vol.67 (C), p.99-110
Hauptverfasser: Candry, Pieter, Ganigué, Ramon
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 110
container_issue C
container_start_page 99
container_title Current opinion in biotechnology
container_volume 67
creator Candry, Pieter
Ganigué, Ramon
description [Display omitted] •A meta-analysis of chain elongation microbiomes shows community divergence.•Key microbiome members are often not classified or characterized.•Isolated chain elongators do not represent suspected catalysts in many microbiomes.•Interactions between chain elongators and other community members are analysed.•Research gaps, research needs, and the potential path forward are discussed. Bioproduction of medium chain carboxylic acids has recently emerged as an alternative strategy to valorize low-value organic waste and side-streams. Key to this route is chain elongation, an anaerobic microbial process driven by ethanol, lactic acid, or carbohydrates. Because these technologies use wastes as feedstocks, mixed microbial communities are often considered as biocatalysts. Understanding and steering these microbiomes is key to optimize bioprocess performance. From a meta-analysis of publicly available sequencing data, we (i) explore how the current collection of isolated chain elongators compares to microbiome members, (ii) discuss the main beneficial and antagonistic interactions with community partners, and (iii) identify the key research gaps and needs to help understand chain elongation microbiomes, and design/steer these novel bioproduction processes.
doi_str_mv 10.1016/j.copbio.2021.01.005
format Article
fullrecord <record><control><sourceid>proquest_osti_</sourceid><recordid>TN_cdi_osti_scitechconnect_1809891</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0958166921000100</els_id><sourcerecordid>2486155014</sourcerecordid><originalsourceid>FETCH-LOGICAL-c435t-162f7ba26c8ced9eb9f6159ee23801160cf134dc9a1484a1dd315a74fb91aba03</originalsourceid><addsrcrecordid>eNp9kE1LAzEQhoMotlb_gUjRiwd3zWSzH7kIUvyCghc9h2x21qZsk5psBf-9WbZ6FAYmh2fyzjyEnANNgUJxu06129bGpYwySGksmh-QKVSlSChn4pBMqcirBIpCTMhJCGsaiaykx2SSZTkTouRTcrVYKWPn2Dn7oXrnw8289QZtEx_KNvPWYTglR63qAp7t-4y8Pz68LZ6T5evTy-J-mWie5X0MYm1ZK1boSmMjsBZtAblAZFlFAQqqW8h4o4UCXnEFTZNBrkre1gJUrWg2I5fjvy70RgZtetQr7axF3UuoqKgEROh6hLbefe4w9HJjgsauUxbdLkjGq5iaU-AR5SOqvQvBYyu33myU_5ZA5eBQruXoUA4OJY0VDc3IxT5hV2-w-Rv6lRaBuxHAKOPLoB92RRuPNn5YtXHm_4QfguiByw</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2486155014</pqid></control><display><type>article</type><title>Chain elongators, friends, and foes</title><source>MEDLINE</source><source>Elsevier ScienceDirect Journals Complete</source><creator>Candry, Pieter ; Ganigué, Ramon</creator><creatorcontrib>Candry, Pieter ; Ganigué, Ramon</creatorcontrib><description>[Display omitted] •A meta-analysis of chain elongation microbiomes shows community divergence.•Key microbiome members are often not classified or characterized.•Isolated chain elongators do not represent suspected catalysts in many microbiomes.•Interactions between chain elongators and other community members are analysed.•Research gaps, research needs, and the potential path forward are discussed. Bioproduction of medium chain carboxylic acids has recently emerged as an alternative strategy to valorize low-value organic waste and side-streams. Key to this route is chain elongation, an anaerobic microbial process driven by ethanol, lactic acid, or carbohydrates. Because these technologies use wastes as feedstocks, mixed microbial communities are often considered as biocatalysts. Understanding and steering these microbiomes is key to optimize bioprocess performance. From a meta-analysis of publicly available sequencing data, we (i) explore how the current collection of isolated chain elongators compares to microbiome members, (ii) discuss the main beneficial and antagonistic interactions with community partners, and (iii) identify the key research gaps and needs to help understand chain elongation microbiomes, and design/steer these novel bioproduction processes.</description><identifier>ISSN: 0958-1669</identifier><identifier>EISSN: 1879-0429</identifier><identifier>DOI: 10.1016/j.copbio.2021.01.005</identifier><identifier>PMID: 33529974</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Carbohydrates ; Fermentation ; Friends ; Humans ; Lactic Acid ; Microbiota - genetics</subject><ispartof>Current opinion in biotechnology, 2021-02, Vol.67 (C), p.99-110</ispartof><rights>2021 Elsevier Ltd</rights><rights>Copyright © 2021 Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c435t-162f7ba26c8ced9eb9f6159ee23801160cf134dc9a1484a1dd315a74fb91aba03</citedby><cites>FETCH-LOGICAL-c435t-162f7ba26c8ced9eb9f6159ee23801160cf134dc9a1484a1dd315a74fb91aba03</cites><orcidid>0000-0002-7784-3650 ; 0000-0002-9564-0195 ; 0000000295640195 ; 0000000277843650</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0958166921000100$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>230,314,776,780,881,3537,27901,27902,65534</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33529974$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/biblio/1809891$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Candry, Pieter</creatorcontrib><creatorcontrib>Ganigué, Ramon</creatorcontrib><title>Chain elongators, friends, and foes</title><title>Current opinion in biotechnology</title><addtitle>Curr Opin Biotechnol</addtitle><description>[Display omitted] •A meta-analysis of chain elongation microbiomes shows community divergence.•Key microbiome members are often not classified or characterized.•Isolated chain elongators do not represent suspected catalysts in many microbiomes.•Interactions between chain elongators and other community members are analysed.•Research gaps, research needs, and the potential path forward are discussed. Bioproduction of medium chain carboxylic acids has recently emerged as an alternative strategy to valorize low-value organic waste and side-streams. Key to this route is chain elongation, an anaerobic microbial process driven by ethanol, lactic acid, or carbohydrates. Because these technologies use wastes as feedstocks, mixed microbial communities are often considered as biocatalysts. Understanding and steering these microbiomes is key to optimize bioprocess performance. From a meta-analysis of publicly available sequencing data, we (i) explore how the current collection of isolated chain elongators compares to microbiome members, (ii) discuss the main beneficial and antagonistic interactions with community partners, and (iii) identify the key research gaps and needs to help understand chain elongation microbiomes, and design/steer these novel bioproduction processes.</description><subject>Carbohydrates</subject><subject>Fermentation</subject><subject>Friends</subject><subject>Humans</subject><subject>Lactic Acid</subject><subject>Microbiota - genetics</subject><issn>0958-1669</issn><issn>1879-0429</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kE1LAzEQhoMotlb_gUjRiwd3zWSzH7kIUvyCghc9h2x21qZsk5psBf-9WbZ6FAYmh2fyzjyEnANNgUJxu06129bGpYwySGksmh-QKVSlSChn4pBMqcirBIpCTMhJCGsaiaykx2SSZTkTouRTcrVYKWPn2Dn7oXrnw8289QZtEx_KNvPWYTglR63qAp7t-4y8Pz68LZ6T5evTy-J-mWie5X0MYm1ZK1boSmMjsBZtAblAZFlFAQqqW8h4o4UCXnEFTZNBrkre1gJUrWg2I5fjvy70RgZtetQr7axF3UuoqKgEROh6hLbefe4w9HJjgsauUxbdLkjGq5iaU-AR5SOqvQvBYyu33myU_5ZA5eBQruXoUA4OJY0VDc3IxT5hV2-w-Rv6lRaBuxHAKOPLoB92RRuPNn5YtXHm_4QfguiByw</recordid><startdate>202102</startdate><enddate>202102</enddate><creator>Candry, Pieter</creator><creator>Ganigué, Ramon</creator><general>Elsevier Ltd</general><general>Elsevier</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>OTOTI</scope><orcidid>https://orcid.org/0000-0002-7784-3650</orcidid><orcidid>https://orcid.org/0000-0002-9564-0195</orcidid><orcidid>https://orcid.org/0000000295640195</orcidid><orcidid>https://orcid.org/0000000277843650</orcidid></search><sort><creationdate>202102</creationdate><title>Chain elongators, friends, and foes</title><author>Candry, Pieter ; Ganigué, Ramon</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c435t-162f7ba26c8ced9eb9f6159ee23801160cf134dc9a1484a1dd315a74fb91aba03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Carbohydrates</topic><topic>Fermentation</topic><topic>Friends</topic><topic>Humans</topic><topic>Lactic Acid</topic><topic>Microbiota - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Candry, Pieter</creatorcontrib><creatorcontrib>Ganigué, Ramon</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV</collection><jtitle>Current opinion in biotechnology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Candry, Pieter</au><au>Ganigué, Ramon</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Chain elongators, friends, and foes</atitle><jtitle>Current opinion in biotechnology</jtitle><addtitle>Curr Opin Biotechnol</addtitle><date>2021-02</date><risdate>2021</risdate><volume>67</volume><issue>C</issue><spage>99</spage><epage>110</epage><pages>99-110</pages><issn>0958-1669</issn><eissn>1879-0429</eissn><abstract>[Display omitted] •A meta-analysis of chain elongation microbiomes shows community divergence.•Key microbiome members are often not classified or characterized.•Isolated chain elongators do not represent suspected catalysts in many microbiomes.•Interactions between chain elongators and other community members are analysed.•Research gaps, research needs, and the potential path forward are discussed. Bioproduction of medium chain carboxylic acids has recently emerged as an alternative strategy to valorize low-value organic waste and side-streams. Key to this route is chain elongation, an anaerobic microbial process driven by ethanol, lactic acid, or carbohydrates. Because these technologies use wastes as feedstocks, mixed microbial communities are often considered as biocatalysts. Understanding and steering these microbiomes is key to optimize bioprocess performance. From a meta-analysis of publicly available sequencing data, we (i) explore how the current collection of isolated chain elongators compares to microbiome members, (ii) discuss the main beneficial and antagonistic interactions with community partners, and (iii) identify the key research gaps and needs to help understand chain elongation microbiomes, and design/steer these novel bioproduction processes.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>33529974</pmid><doi>10.1016/j.copbio.2021.01.005</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0002-7784-3650</orcidid><orcidid>https://orcid.org/0000-0002-9564-0195</orcidid><orcidid>https://orcid.org/0000000295640195</orcidid><orcidid>https://orcid.org/0000000277843650</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0958-1669
ispartof Current opinion in biotechnology, 2021-02, Vol.67 (C), p.99-110
issn 0958-1669
1879-0429
language eng
recordid cdi_osti_scitechconnect_1809891
source MEDLINE; Elsevier ScienceDirect Journals Complete
subjects Carbohydrates
Fermentation
Friends
Humans
Lactic Acid
Microbiota - genetics
title Chain elongators, friends, and foes
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-20T20%3A30%3A07IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_osti_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Chain%20elongators,%20friends,%20and%20foes&rft.jtitle=Current%20opinion%20in%20biotechnology&rft.au=Candry,%20Pieter&rft.date=2021-02&rft.volume=67&rft.issue=C&rft.spage=99&rft.epage=110&rft.pages=99-110&rft.issn=0958-1669&rft.eissn=1879-0429&rft_id=info:doi/10.1016/j.copbio.2021.01.005&rft_dat=%3Cproquest_osti_%3E2486155014%3C/proquest_osti_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2486155014&rft_id=info:pmid/33529974&rft_els_id=S0958166921000100&rfr_iscdi=true