Undefined cellulase formulations hinder scientific reproducibility
In the shadow of a burgeoning biomass-to-fuels industry, biological conversion of lignocellulose to fermentable sugars in a cost-effective manner is key to the success of second-generation and advanced biofuel production. For the effective comparison of one cellulase preparation to another, cellulas...
Gespeichert in:
Veröffentlicht in: | Biotechnology for biofuels 2017-11, Vol.10 (1) |
---|---|
Hauptverfasser: | , , , , , , , , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | |
---|---|
container_issue | 1 |
container_start_page | |
container_title | Biotechnology for biofuels |
container_volume | 10 |
creator | Himmel, Michael E. Abbas, Charles A. Baker, John O. Bayer, Edward A. Bomble, Yannick J. Brunecky, Roman Chen, Xiaowen Felby, Claus Jeoh, Tina Kumar, Rajeev McCleary, Barry V. Pletschke, Brett I. Tucker, Melvin P. Wyman, Charles E. Decker, Stephen R. |
description | In the shadow of a burgeoning biomass-to-fuels industry, biological conversion of lignocellulose to fermentable sugars in a cost-effective manner is key to the success of second-generation and advanced biofuel production. For the effective comparison of one cellulase preparation to another, cellulase assays are typically carried out with one or more engineered cellulase formulations or natural exoproteomes of known performance serving as positive controls. When these formulations have unknown composition, as is the case with several widely used commercial products, it becomes impossible to compare or reproduce work done today to work done in the future, where, for example, such preparations may not be available. Therefore, being a critical tenet of science publishing, experimental reproducibility is endangered by the continued use of these undisclosed products. We propose the introduction of standard procedures and materials to produce specific and reproducible cellulase formulations. These formulations are to serve as yardsticks to measure improvements and performance of new cellulase formulations. |
doi_str_mv | 10.1186/s13068-017-0974-y |
format | Article |
fullrecord | <record><control><sourceid>osti</sourceid><recordid>TN_cdi_osti_scitechconnect_1618705</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1618705</sourcerecordid><originalsourceid>FETCH-osti_scitechconnect_16187053</originalsourceid><addsrcrecordid>eNqNi7sOgjAUQBujifj4ALfGvdoboMVVo_EDdCZYLuGa2hpaBv5eBgdHp3OGcxjbgNwBFGofIJWqEBK0kAediWHCEtB5JlSRZtMfn7NFCE8pFWipE3a8uxobclhzg9b2tgrIG9-9RovkXeAtjUXHgyF0kRoyvMN35-ve0IMsxWHFZk1lA66_XLLt5Xw7XYUPkcrxi2ha451DE0tQUGiZp39FH2isQfA</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Undefined cellulase formulations hinder scientific reproducibility</title><source>DOAJ Directory of Open Access Journals</source><source>PubMed Central Open Access</source><source>PubMed Central</source><source>Free Full-Text Journals in Chemistry</source><creator>Himmel, Michael E. ; Abbas, Charles A. ; Baker, John O. ; Bayer, Edward A. ; Bomble, Yannick J. ; Brunecky, Roman ; Chen, Xiaowen ; Felby, Claus ; Jeoh, Tina ; Kumar, Rajeev ; McCleary, Barry V. ; Pletschke, Brett I. ; Tucker, Melvin P. ; Wyman, Charles E. ; Decker, Stephen R.</creator><creatorcontrib>Himmel, Michael E. ; Abbas, Charles A. ; Baker, John O. ; Bayer, Edward A. ; Bomble, Yannick J. ; Brunecky, Roman ; Chen, Xiaowen ; Felby, Claus ; Jeoh, Tina ; Kumar, Rajeev ; McCleary, Barry V. ; Pletschke, Brett I. ; Tucker, Melvin P. ; Wyman, Charles E. ; Decker, Stephen R. ; National Renewable Energy Lab. (NREL), Golden, CO (United States)</creatorcontrib><description>In the shadow of a burgeoning biomass-to-fuels industry, biological conversion of lignocellulose to fermentable sugars in a cost-effective manner is key to the success of second-generation and advanced biofuel production. For the effective comparison of one cellulase preparation to another, cellulase assays are typically carried out with one or more engineered cellulase formulations or natural exoproteomes of known performance serving as positive controls. When these formulations have unknown composition, as is the case with several widely used commercial products, it becomes impossible to compare or reproduce work done today to work done in the future, where, for example, such preparations may not be available. Therefore, being a critical tenet of science publishing, experimental reproducibility is endangered by the continued use of these undisclosed products. We propose the introduction of standard procedures and materials to produce specific and reproducible cellulase formulations. These formulations are to serve as yardsticks to measure improvements and performance of new cellulase formulations.</description><identifier>ISSN: 1754-6834</identifier><identifier>EISSN: 1754-6834</identifier><identifier>DOI: 10.1186/s13068-017-0974-y</identifier><language>eng</language><publisher>Netherlands: Springer Science + Business Media</publisher><subject>09 BIOMASS FUELS ; assays ; biofuels ; cellulase ; cellulose ; commercial cellulase formulations</subject><ispartof>Biotechnology for biofuels, 2017-11, Vol.10 (1)</ispartof><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,864,885,27924,27925</link.rule.ids><backlink>$$Uhttps://www.osti.gov/biblio/1618705$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Himmel, Michael E.</creatorcontrib><creatorcontrib>Abbas, Charles A.</creatorcontrib><creatorcontrib>Baker, John O.</creatorcontrib><creatorcontrib>Bayer, Edward A.</creatorcontrib><creatorcontrib>Bomble, Yannick J.</creatorcontrib><creatorcontrib>Brunecky, Roman</creatorcontrib><creatorcontrib>Chen, Xiaowen</creatorcontrib><creatorcontrib>Felby, Claus</creatorcontrib><creatorcontrib>Jeoh, Tina</creatorcontrib><creatorcontrib>Kumar, Rajeev</creatorcontrib><creatorcontrib>McCleary, Barry V.</creatorcontrib><creatorcontrib>Pletschke, Brett I.</creatorcontrib><creatorcontrib>Tucker, Melvin P.</creatorcontrib><creatorcontrib>Wyman, Charles E.</creatorcontrib><creatorcontrib>Decker, Stephen R.</creatorcontrib><creatorcontrib>National Renewable Energy Lab. (NREL), Golden, CO (United States)</creatorcontrib><title>Undefined cellulase formulations hinder scientific reproducibility</title><title>Biotechnology for biofuels</title><description>In the shadow of a burgeoning biomass-to-fuels industry, biological conversion of lignocellulose to fermentable sugars in a cost-effective manner is key to the success of second-generation and advanced biofuel production. For the effective comparison of one cellulase preparation to another, cellulase assays are typically carried out with one or more engineered cellulase formulations or natural exoproteomes of known performance serving as positive controls. When these formulations have unknown composition, as is the case with several widely used commercial products, it becomes impossible to compare or reproduce work done today to work done in the future, where, for example, such preparations may not be available. Therefore, being a critical tenet of science publishing, experimental reproducibility is endangered by the continued use of these undisclosed products. We propose the introduction of standard procedures and materials to produce specific and reproducible cellulase formulations. These formulations are to serve as yardsticks to measure improvements and performance of new cellulase formulations.</description><subject>09 BIOMASS FUELS</subject><subject>assays</subject><subject>biofuels</subject><subject>cellulase</subject><subject>cellulose</subject><subject>commercial cellulase formulations</subject><issn>1754-6834</issn><issn>1754-6834</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNqNi7sOgjAUQBujifj4ALfGvdoboMVVo_EDdCZYLuGa2hpaBv5eBgdHp3OGcxjbgNwBFGofIJWqEBK0kAediWHCEtB5JlSRZtMfn7NFCE8pFWipE3a8uxobclhzg9b2tgrIG9-9RovkXeAtjUXHgyF0kRoyvMN35-ve0IMsxWHFZk1lA66_XLLt5Xw7XYUPkcrxi2ha451DE0tQUGiZp39FH2isQfA</recordid><startdate>20171128</startdate><enddate>20171128</enddate><creator>Himmel, Michael E.</creator><creator>Abbas, Charles A.</creator><creator>Baker, John O.</creator><creator>Bayer, Edward A.</creator><creator>Bomble, Yannick J.</creator><creator>Brunecky, Roman</creator><creator>Chen, Xiaowen</creator><creator>Felby, Claus</creator><creator>Jeoh, Tina</creator><creator>Kumar, Rajeev</creator><creator>McCleary, Barry V.</creator><creator>Pletschke, Brett I.</creator><creator>Tucker, Melvin P.</creator><creator>Wyman, Charles E.</creator><creator>Decker, Stephen R.</creator><general>Springer Science + Business Media</general><scope>OTOTI</scope></search><sort><creationdate>20171128</creationdate><title>Undefined cellulase formulations hinder scientific reproducibility</title><author>Himmel, Michael E. ; Abbas, Charles A. ; Baker, John O. ; Bayer, Edward A. ; Bomble, Yannick J. ; Brunecky, Roman ; Chen, Xiaowen ; Felby, Claus ; Jeoh, Tina ; Kumar, Rajeev ; McCleary, Barry V. ; Pletschke, Brett I. ; Tucker, Melvin P. ; Wyman, Charles E. ; Decker, Stephen R.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-osti_scitechconnect_16187053</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>09 BIOMASS FUELS</topic><topic>assays</topic><topic>biofuels</topic><topic>cellulase</topic><topic>cellulose</topic><topic>commercial cellulase formulations</topic><toplevel>online_resources</toplevel><creatorcontrib>Himmel, Michael E.</creatorcontrib><creatorcontrib>Abbas, Charles A.</creatorcontrib><creatorcontrib>Baker, John O.</creatorcontrib><creatorcontrib>Bayer, Edward A.</creatorcontrib><creatorcontrib>Bomble, Yannick J.</creatorcontrib><creatorcontrib>Brunecky, Roman</creatorcontrib><creatorcontrib>Chen, Xiaowen</creatorcontrib><creatorcontrib>Felby, Claus</creatorcontrib><creatorcontrib>Jeoh, Tina</creatorcontrib><creatorcontrib>Kumar, Rajeev</creatorcontrib><creatorcontrib>McCleary, Barry V.</creatorcontrib><creatorcontrib>Pletschke, Brett I.</creatorcontrib><creatorcontrib>Tucker, Melvin P.</creatorcontrib><creatorcontrib>Wyman, Charles E.</creatorcontrib><creatorcontrib>Decker, Stephen R.</creatorcontrib><creatorcontrib>National Renewable Energy Lab. (NREL), Golden, CO (United States)</creatorcontrib><collection>OSTI.GOV</collection><jtitle>Biotechnology for biofuels</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Himmel, Michael E.</au><au>Abbas, Charles A.</au><au>Baker, John O.</au><au>Bayer, Edward A.</au><au>Bomble, Yannick J.</au><au>Brunecky, Roman</au><au>Chen, Xiaowen</au><au>Felby, Claus</au><au>Jeoh, Tina</au><au>Kumar, Rajeev</au><au>McCleary, Barry V.</au><au>Pletschke, Brett I.</au><au>Tucker, Melvin P.</au><au>Wyman, Charles E.</au><au>Decker, Stephen R.</au><aucorp>National Renewable Energy Lab. (NREL), Golden, CO (United States)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Undefined cellulase formulations hinder scientific reproducibility</atitle><jtitle>Biotechnology for biofuels</jtitle><date>2017-11-28</date><risdate>2017</risdate><volume>10</volume><issue>1</issue><issn>1754-6834</issn><eissn>1754-6834</eissn><abstract>In the shadow of a burgeoning biomass-to-fuels industry, biological conversion of lignocellulose to fermentable sugars in a cost-effective manner is key to the success of second-generation and advanced biofuel production. For the effective comparison of one cellulase preparation to another, cellulase assays are typically carried out with one or more engineered cellulase formulations or natural exoproteomes of known performance serving as positive controls. When these formulations have unknown composition, as is the case with several widely used commercial products, it becomes impossible to compare or reproduce work done today to work done in the future, where, for example, such preparations may not be available. Therefore, being a critical tenet of science publishing, experimental reproducibility is endangered by the continued use of these undisclosed products. We propose the introduction of standard procedures and materials to produce specific and reproducible cellulase formulations. These formulations are to serve as yardsticks to measure improvements and performance of new cellulase formulations.</abstract><cop>Netherlands</cop><pub>Springer Science + Business Media</pub><doi>10.1186/s13068-017-0974-y</doi></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1754-6834 |
ispartof | Biotechnology for biofuels, 2017-11, Vol.10 (1) |
issn | 1754-6834 1754-6834 |
language | eng |
recordid | cdi_osti_scitechconnect_1618705 |
source | DOAJ Directory of Open Access Journals; PubMed Central Open Access; PubMed Central; Free Full-Text Journals in Chemistry |
subjects | 09 BIOMASS FUELS assays biofuels cellulase cellulose commercial cellulase formulations |
title | Undefined cellulase formulations hinder scientific reproducibility |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-07T08%3A32%3A26IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-osti&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Undefined%20cellulase%20formulations%20hinder%20scientific%20reproducibility&rft.jtitle=Biotechnology%20for%20biofuels&rft.au=Himmel,%20Michael%20E.&rft.aucorp=National%20Renewable%20Energy%20Lab.%20(NREL),%20Golden,%20CO%20(United%20States)&rft.date=2017-11-28&rft.volume=10&rft.issue=1&rft.issn=1754-6834&rft.eissn=1754-6834&rft_id=info:doi/10.1186/s13068-017-0974-y&rft_dat=%3Costi%3E1618705%3C/osti%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true |