Metagenomic evaluation of a Utah tar sand microbiota suggests the predominant hydrocarbonoclastic role of Actinobacteria [version 1; peer review: 1 approved, 1 approved with reservations]

Background: Occurrences of tar sands have been reported in 22 states in the United States; however, the largest deposit is located in southwestern Utah. It has been suggested that tar sands were created by the microbial degradation of immobile subsurface oil over several million years; however, litt...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:F1000 research 2018, Vol.7, p.1650
Hauptverfasser: Lewis, Dawn E, Pathak, Ashish, Jones, Cynthia B, Akpovo, Charlemagne, Chauhan, Ashvini
Format: Artikel
Sprache:eng
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page
container_issue
container_start_page 1650
container_title F1000 research
container_volume 7
creator Lewis, Dawn E
Pathak, Ashish
Jones, Cynthia B
Akpovo, Charlemagne
Chauhan, Ashvini
description Background: Occurrences of tar sands have been reported in 22 states in the United States; however, the largest deposit is located in southwestern Utah. It has been suggested that tar sands were created by the microbial degradation of immobile subsurface oil over several million years; however, little is known about the indigenous microbial communities in the bituminous tar sands. Methods: This study identified Utah tar sand microbiota using next-generation sequencing technology and characterized the functional diversity using community-level physiological profile (CLPP). Results: Microbiota identified in these tar sands are mainly affiliated with the Gram-positive Actinobacteria and representatives of genera that have also been previously shown to degrade aromatic hydrocarbons, including Arthrobacter, Dietzia, Janibacter, Nocardioides, Microbacterium, Agrococcus and Salinibacterium, suggesting that these microbes likely play roles in the biodegradation of oil-hydrocarbons. CLPP analysis revealed less than 24 h was needed for the first color development in the microplate wells containing the polymers, whereas the duration of the lag phase of the carboxylic acids was prolonged. Conclusions: The quick utilization of the polymers suggests that the indigenous microbial community, especially the actinomycetes in the tar sand habitat, are poised and primed to degrade these recalcitrant compounds.
doi_str_mv 10.12688/f1000research.16126.1
format Article
fullrecord <record><control><sourceid>faculty1000_osti_</sourceid><recordid>TN_cdi_osti_scitechconnect_1477900</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>10_12688_f1000research_16126_1</sourcerecordid><originalsourceid>FETCH-LOGICAL-c2961-c3d2941cf6c6bec784b2ef93ba57af16b4ec35c9db3899d4e5375926548170e23</originalsourceid><addsrcrecordid>eNp9kc1q3DAUhU1poSHJKxTRdWcqybZspasQmjaQkk2zCkFcX1-PVRzJSBqHeba-XDUzhaabrHQR5zv35xTFB8HXQqq2_TwIznmgSBBwXAuVf9fiTXEieaVWouLy7Yv6fXEe468McK1LJZuT4vcPSrAh558sMlpg2kKy3jE_MGD3CUaWILAIrmdZEXxnfQIWt5sNxRRZGonNgfqMO3CJjbs-eITQeedxgpiya_AT7f0uMVnnO8BEwQJ7WCjEfSvxhc1EgQVaLD1fMMFgnoNfqP_0ombPNo1sv2hYDiPGx7Pi3QBTpPO_72lxf_3159X31e3dt5ury9sVSq3ECste6krgoFB1hE1bdZIGXXZQNzAI1VWEZY2678pW676iumxqLVVdtaLhJMvT4uPR1-d9TESbCEf0zhEmI6qm0ZxnkTqK8pFiDDSYOdgnCDsjuDlEZf6LyhyiMiKDF0dwANxOabcXmX-q1-E_90Ggtw</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Metagenomic evaluation of a Utah tar sand microbiota suggests the predominant hydrocarbonoclastic role of Actinobacteria [version 1; peer review: 1 approved, 1 approved with reservations]</title><source>DOAJ Directory of Open Access Journals</source><source>PubMed Central Open Access</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><creator>Lewis, Dawn E ; Pathak, Ashish ; Jones, Cynthia B ; Akpovo, Charlemagne ; Chauhan, Ashvini</creator><creatorcontrib>Lewis, Dawn E ; Pathak, Ashish ; Jones, Cynthia B ; Akpovo, Charlemagne ; Chauhan, Ashvini</creatorcontrib><description>Background: Occurrences of tar sands have been reported in 22 states in the United States; however, the largest deposit is located in southwestern Utah. It has been suggested that tar sands were created by the microbial degradation of immobile subsurface oil over several million years; however, little is known about the indigenous microbial communities in the bituminous tar sands. Methods: This study identified Utah tar sand microbiota using next-generation sequencing technology and characterized the functional diversity using community-level physiological profile (CLPP). Results: Microbiota identified in these tar sands are mainly affiliated with the Gram-positive Actinobacteria and representatives of genera that have also been previously shown to degrade aromatic hydrocarbons, including Arthrobacter, Dietzia, Janibacter, Nocardioides, Microbacterium, Agrococcus and Salinibacterium, suggesting that these microbes likely play roles in the biodegradation of oil-hydrocarbons. CLPP analysis revealed less than 24 h was needed for the first color development in the microplate wells containing the polymers, whereas the duration of the lag phase of the carboxylic acids was prolonged. Conclusions: The quick utilization of the polymers suggests that the indigenous microbial community, especially the actinomycetes in the tar sand habitat, are poised and primed to degrade these recalcitrant compounds.</description><identifier>ISSN: 2046-1402</identifier><identifier>EISSN: 2046-1402</identifier><identifier>DOI: 10.12688/f1000research.16126.1</identifier><language>eng</language><publisher>United Kingdom: F1000 Research, Ltd</publisher><ispartof>F1000 research, 2018, Vol.7, p.1650</ispartof><rights>Copyright: © 2018 Lewis DE et al.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2961-c3d2941cf6c6bec784b2ef93ba57af16b4ec35c9db3899d4e5375926548170e23</citedby><cites>FETCH-LOGICAL-c2961-c3d2941cf6c6bec784b2ef93ba57af16b4ec35c9db3899d4e5375926548170e23</cites><orcidid>0000-0002-0693-1768 ; 0000000206931768</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,864,885,4021,27921,27922,27923</link.rule.ids><backlink>$$Uhttps://www.osti.gov/biblio/1477900$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Lewis, Dawn E</creatorcontrib><creatorcontrib>Pathak, Ashish</creatorcontrib><creatorcontrib>Jones, Cynthia B</creatorcontrib><creatorcontrib>Akpovo, Charlemagne</creatorcontrib><creatorcontrib>Chauhan, Ashvini</creatorcontrib><title>Metagenomic evaluation of a Utah tar sand microbiota suggests the predominant hydrocarbonoclastic role of Actinobacteria [version 1; peer review: 1 approved, 1 approved with reservations]</title><title>F1000 research</title><description>Background: Occurrences of tar sands have been reported in 22 states in the United States; however, the largest deposit is located in southwestern Utah. It has been suggested that tar sands were created by the microbial degradation of immobile subsurface oil over several million years; however, little is known about the indigenous microbial communities in the bituminous tar sands. Methods: This study identified Utah tar sand microbiota using next-generation sequencing technology and characterized the functional diversity using community-level physiological profile (CLPP). Results: Microbiota identified in these tar sands are mainly affiliated with the Gram-positive Actinobacteria and representatives of genera that have also been previously shown to degrade aromatic hydrocarbons, including Arthrobacter, Dietzia, Janibacter, Nocardioides, Microbacterium, Agrococcus and Salinibacterium, suggesting that these microbes likely play roles in the biodegradation of oil-hydrocarbons. CLPP analysis revealed less than 24 h was needed for the first color development in the microplate wells containing the polymers, whereas the duration of the lag phase of the carboxylic acids was prolonged. Conclusions: The quick utilization of the polymers suggests that the indigenous microbial community, especially the actinomycetes in the tar sand habitat, are poised and primed to degrade these recalcitrant compounds.</description><issn>2046-1402</issn><issn>2046-1402</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNp9kc1q3DAUhU1poSHJKxTRdWcqybZspasQmjaQkk2zCkFcX1-PVRzJSBqHeba-XDUzhaabrHQR5zv35xTFB8HXQqq2_TwIznmgSBBwXAuVf9fiTXEieaVWouLy7Yv6fXEe468McK1LJZuT4vcPSrAh558sMlpg2kKy3jE_MGD3CUaWILAIrmdZEXxnfQIWt5sNxRRZGonNgfqMO3CJjbs-eITQeedxgpiya_AT7f0uMVnnO8BEwQJ7WCjEfSvxhc1EgQVaLD1fMMFgnoNfqP_0ombPNo1sv2hYDiPGx7Pi3QBTpPO_72lxf_3159X31e3dt5ury9sVSq3ECste6krgoFB1hE1bdZIGXXZQNzAI1VWEZY2678pW676iumxqLVVdtaLhJMvT4uPR1-d9TESbCEf0zhEmI6qm0ZxnkTqK8pFiDDSYOdgnCDsjuDlEZf6LyhyiMiKDF0dwANxOabcXmX-q1-E_90Ggtw</recordid><startdate>2018</startdate><enddate>2018</enddate><creator>Lewis, Dawn E</creator><creator>Pathak, Ashish</creator><creator>Jones, Cynthia B</creator><creator>Akpovo, Charlemagne</creator><creator>Chauhan, Ashvini</creator><general>F1000 Research, Ltd</general><scope>C-E</scope><scope>CH4</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>OTOTI</scope><orcidid>https://orcid.org/0000-0002-0693-1768</orcidid><orcidid>https://orcid.org/0000000206931768</orcidid></search><sort><creationdate>2018</creationdate><title>Metagenomic evaluation of a Utah tar sand microbiota suggests the predominant hydrocarbonoclastic role of Actinobacteria [version 1; peer review: 1 approved, 1 approved with reservations]</title><author>Lewis, Dawn E ; Pathak, Ashish ; Jones, Cynthia B ; Akpovo, Charlemagne ; Chauhan, Ashvini</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2961-c3d2941cf6c6bec784b2ef93ba57af16b4ec35c9db3899d4e5375926548170e23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lewis, Dawn E</creatorcontrib><creatorcontrib>Pathak, Ashish</creatorcontrib><creatorcontrib>Jones, Cynthia B</creatorcontrib><creatorcontrib>Akpovo, Charlemagne</creatorcontrib><creatorcontrib>Chauhan, Ashvini</creatorcontrib><collection>F1000Research</collection><collection>Faculty of 1000</collection><collection>CrossRef</collection><collection>OSTI.GOV</collection><jtitle>F1000 research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lewis, Dawn E</au><au>Pathak, Ashish</au><au>Jones, Cynthia B</au><au>Akpovo, Charlemagne</au><au>Chauhan, Ashvini</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Metagenomic evaluation of a Utah tar sand microbiota suggests the predominant hydrocarbonoclastic role of Actinobacteria [version 1; peer review: 1 approved, 1 approved with reservations]</atitle><jtitle>F1000 research</jtitle><date>2018</date><risdate>2018</risdate><volume>7</volume><spage>1650</spage><pages>1650-</pages><issn>2046-1402</issn><eissn>2046-1402</eissn><abstract>Background: Occurrences of tar sands have been reported in 22 states in the United States; however, the largest deposit is located in southwestern Utah. It has been suggested that tar sands were created by the microbial degradation of immobile subsurface oil over several million years; however, little is known about the indigenous microbial communities in the bituminous tar sands. Methods: This study identified Utah tar sand microbiota using next-generation sequencing technology and characterized the functional diversity using community-level physiological profile (CLPP). Results: Microbiota identified in these tar sands are mainly affiliated with the Gram-positive Actinobacteria and representatives of genera that have also been previously shown to degrade aromatic hydrocarbons, including Arthrobacter, Dietzia, Janibacter, Nocardioides, Microbacterium, Agrococcus and Salinibacterium, suggesting that these microbes likely play roles in the biodegradation of oil-hydrocarbons. CLPP analysis revealed less than 24 h was needed for the first color development in the microplate wells containing the polymers, whereas the duration of the lag phase of the carboxylic acids was prolonged. Conclusions: The quick utilization of the polymers suggests that the indigenous microbial community, especially the actinomycetes in the tar sand habitat, are poised and primed to degrade these recalcitrant compounds.</abstract><cop>United Kingdom</cop><pub>F1000 Research, Ltd</pub><doi>10.12688/f1000research.16126.1</doi><orcidid>https://orcid.org/0000-0002-0693-1768</orcidid><orcidid>https://orcid.org/0000000206931768</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 2046-1402
ispartof F1000 research, 2018, Vol.7, p.1650
issn 2046-1402
2046-1402
language eng
recordid cdi_osti_scitechconnect_1477900
source DOAJ Directory of Open Access Journals; PubMed Central Open Access; EZB-FREE-00999 freely available EZB journals; PubMed Central
title Metagenomic evaluation of a Utah tar sand microbiota suggests the predominant hydrocarbonoclastic role of Actinobacteria [version 1; peer review: 1 approved, 1 approved with reservations]
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-14T08%3A29%3A05IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-faculty1000_osti_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Metagenomic%20evaluation%20of%20a%20Utah%20tar%20sand%20microbiota%20suggests%20the%20predominant%20hydrocarbonoclastic%20role%20of%20Actinobacteria%20%5Bversion%201;%20peer%20review:%201%20approved,%201%20approved%20with%20reservations%5D&rft.jtitle=F1000%20research&rft.au=Lewis,%20Dawn%20E&rft.date=2018&rft.volume=7&rft.spage=1650&rft.pages=1650-&rft.issn=2046-1402&rft.eissn=2046-1402&rft_id=info:doi/10.12688/f1000research.16126.1&rft_dat=%3Cfaculty1000_osti_%3E10_12688_f1000research_16126_1%3C/faculty1000_osti_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true