A ricin forensic profiling approach based on a complex set of biomarkers
A forensic method for the retrospective determination of preparation methods used for illicit ricin toxin production was developed. The method was based on a complex set of biomarkers, including carbohydrates, fatty acids, seed storage proteins, in combination with data on ricin and Ricinus communis...
Gespeichert in:
Veröffentlicht in: | Talanta (Oxford) 2018-08, Vol.186, p.628-635 |
---|---|
Hauptverfasser: | , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 635 |
---|---|
container_issue | |
container_start_page | 628 |
container_title | Talanta (Oxford) |
container_volume | 186 |
creator | Fredriksson, Sten-Åke Wunschel, David S. Lindström, Susanne Wiklund Nilsson, Calle Wahl, Karen Åstot, Crister |
description | A forensic method for the retrospective determination of preparation methods used for illicit ricin toxin production was developed. The method was based on a complex set of biomarkers, including carbohydrates, fatty acids, seed storage proteins, in combination with data on ricin and Ricinus communis agglutinin. The analyses were performed on samples prepared from four castor bean plant (R. communis) cultivars by four different sample preparation methods (PM1–PM4) ranging from simple disintegration of the castor beans to multi-step preparation methods including different protein precipitation methods. Comprehensive analytical data was collected by use of a range of analytical methods and robust orthogonal partial least squares-discriminant analysis- models (OPLS-DA) were constructed based on the calibration set. By the use of a decision tree and two OPLS-DA models, the sample preparation methods of test set samples were determined. The model statistics of the two models were good and a 100% rate of correct predictions of the test set was achieved.
[Display omitted]
•Retrospective determination of the methods used for ricin production.•Four ricin preparation methods and four castor bean ecotypes in calibration model.•Use of a complex set of chemical attribution signatures.•100% correct prediction of test set samples. |
doi_str_mv | 10.1016/j.talanta.2018.03.070 |
format | Article |
fullrecord | <record><control><sourceid>proquest_osti_</sourceid><recordid>TN_cdi_osti_scitechconnect_1430520</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0039914018303102</els_id><sourcerecordid>2042756594</sourcerecordid><originalsourceid>FETCH-LOGICAL-c439t-92c00b409f8e6ab9e7e6af23dee0f41a1a3aae16f79300ced19f471031bcc4c13</originalsourceid><addsrcrecordid>eNqFkD1PwzAQhi0EoqXwE0AWE0vCOXaaekJVBRSpEgvMluOcqUsaFztF8O9x1cLKdDc89_E-hFwyyBmw8e0q73Wru17nBbBJDjyHCo7IkE0qnvGy4sdkCMBlJpmAATmLcQUABQd-SgaFrCZCMD4k8ykNzriOWh-wi87QTfDWta57o3qTem2WtNYRG-o7qqnx602LXzRiT72ltfNrHd4xxHNyYnUb8eJQR-T14f5lNs8Wz49Ps-kiM4LLPpOFAagFSDvBsa4lVqnYgjeIYAXTTHOtkY1tJTmAwYZJKyoGnNXGCMP4iFzv9_rYOxWN69Esje86NL1igkNZQIJu9lAK8LHF2Ku1iwbbJAz9NqoCRFGV41KKhJZ71AQfY0CrNsGlTN-KgdqZVit1MK12phVwlUynuavDiW29xuZv6ldtAu72ACYbnw7D7lnsUiQXdr823v1z4gdTXpFb</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2042756594</pqid></control><display><type>article</type><title>A ricin forensic profiling approach based on a complex set of biomarkers</title><source>Elsevier ScienceDirect Journals</source><creator>Fredriksson, Sten-Åke ; Wunschel, David S. ; Lindström, Susanne Wiklund ; Nilsson, Calle ; Wahl, Karen ; Åstot, Crister</creator><creatorcontrib>Fredriksson, Sten-Åke ; Wunschel, David S. ; Lindström, Susanne Wiklund ; Nilsson, Calle ; Wahl, Karen ; Åstot, Crister ; Pacific Northwest National Lab. (PNNL), Richland, WA (United States)</creatorcontrib><description>A forensic method for the retrospective determination of preparation methods used for illicit ricin toxin production was developed. The method was based on a complex set of biomarkers, including carbohydrates, fatty acids, seed storage proteins, in combination with data on ricin and Ricinus communis agglutinin. The analyses were performed on samples prepared from four castor bean plant (R. communis) cultivars by four different sample preparation methods (PM1–PM4) ranging from simple disintegration of the castor beans to multi-step preparation methods including different protein precipitation methods. Comprehensive analytical data was collected by use of a range of analytical methods and robust orthogonal partial least squares-discriminant analysis- models (OPLS-DA) were constructed based on the calibration set. By the use of a decision tree and two OPLS-DA models, the sample preparation methods of test set samples were determined. The model statistics of the two models were good and a 100% rate of correct predictions of the test set was achieved.
[Display omitted]
•Retrospective determination of the methods used for ricin production.•Four ricin preparation methods and four castor bean ecotypes in calibration model.•Use of a complex set of chemical attribution signatures.•100% correct prediction of test set samples.</description><identifier>ISSN: 0039-9140</identifier><identifier>EISSN: 1873-3573</identifier><identifier>DOI: 10.1016/j.talanta.2018.03.070</identifier><identifier>PMID: 29784413</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>BASIC BIOLOGICAL SCIENCES ; Castor bean ; Chemical attribution signatures ; Multivariate statistics ; Ricin production methods ; Ricinus communis ; Source attribution</subject><ispartof>Talanta (Oxford), 2018-08, Vol.186, p.628-635</ispartof><rights>2018 Elsevier B.V.</rights><rights>Copyright © 2018 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c439t-92c00b409f8e6ab9e7e6af23dee0f41a1a3aae16f79300ced19f471031bcc4c13</citedby><cites>FETCH-LOGICAL-c439t-92c00b409f8e6ab9e7e6af23dee0f41a1a3aae16f79300ced19f471031bcc4c13</cites><orcidid>0000-0002-3713-1990 ; 0000000237131990</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.talanta.2018.03.070$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>230,314,777,781,882,3537,27905,27906,45976</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29784413$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/servlets/purl/1430520$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Fredriksson, Sten-Åke</creatorcontrib><creatorcontrib>Wunschel, David S.</creatorcontrib><creatorcontrib>Lindström, Susanne Wiklund</creatorcontrib><creatorcontrib>Nilsson, Calle</creatorcontrib><creatorcontrib>Wahl, Karen</creatorcontrib><creatorcontrib>Åstot, Crister</creatorcontrib><creatorcontrib>Pacific Northwest National Lab. (PNNL), Richland, WA (United States)</creatorcontrib><title>A ricin forensic profiling approach based on a complex set of biomarkers</title><title>Talanta (Oxford)</title><addtitle>Talanta</addtitle><description>A forensic method for the retrospective determination of preparation methods used for illicit ricin toxin production was developed. The method was based on a complex set of biomarkers, including carbohydrates, fatty acids, seed storage proteins, in combination with data on ricin and Ricinus communis agglutinin. The analyses were performed on samples prepared from four castor bean plant (R. communis) cultivars by four different sample preparation methods (PM1–PM4) ranging from simple disintegration of the castor beans to multi-step preparation methods including different protein precipitation methods. Comprehensive analytical data was collected by use of a range of analytical methods and robust orthogonal partial least squares-discriminant analysis- models (OPLS-DA) were constructed based on the calibration set. By the use of a decision tree and two OPLS-DA models, the sample preparation methods of test set samples were determined. The model statistics of the two models were good and a 100% rate of correct predictions of the test set was achieved.
[Display omitted]
•Retrospective determination of the methods used for ricin production.•Four ricin preparation methods and four castor bean ecotypes in calibration model.•Use of a complex set of chemical attribution signatures.•100% correct prediction of test set samples.</description><subject>BASIC BIOLOGICAL SCIENCES</subject><subject>Castor bean</subject><subject>Chemical attribution signatures</subject><subject>Multivariate statistics</subject><subject>Ricin production methods</subject><subject>Ricinus communis</subject><subject>Source attribution</subject><issn>0039-9140</issn><issn>1873-3573</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNqFkD1PwzAQhi0EoqXwE0AWE0vCOXaaekJVBRSpEgvMluOcqUsaFztF8O9x1cLKdDc89_E-hFwyyBmw8e0q73Wru17nBbBJDjyHCo7IkE0qnvGy4sdkCMBlJpmAATmLcQUABQd-SgaFrCZCMD4k8ykNzriOWh-wi87QTfDWta57o3qTem2WtNYRG-o7qqnx602LXzRiT72ltfNrHd4xxHNyYnUb8eJQR-T14f5lNs8Wz49Ps-kiM4LLPpOFAagFSDvBsa4lVqnYgjeIYAXTTHOtkY1tJTmAwYZJKyoGnNXGCMP4iFzv9_rYOxWN69Esje86NL1igkNZQIJu9lAK8LHF2Ku1iwbbJAz9NqoCRFGV41KKhJZ71AQfY0CrNsGlTN-KgdqZVit1MK12phVwlUynuavDiW29xuZv6ldtAu72ACYbnw7D7lnsUiQXdr823v1z4gdTXpFb</recordid><startdate>20180815</startdate><enddate>20180815</enddate><creator>Fredriksson, Sten-Åke</creator><creator>Wunschel, David S.</creator><creator>Lindström, Susanne Wiklund</creator><creator>Nilsson, Calle</creator><creator>Wahl, Karen</creator><creator>Åstot, Crister</creator><general>Elsevier B.V</general><general>Elsevier</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>OIOZB</scope><scope>OTOTI</scope><orcidid>https://orcid.org/0000-0002-3713-1990</orcidid><orcidid>https://orcid.org/0000000237131990</orcidid></search><sort><creationdate>20180815</creationdate><title>A ricin forensic profiling approach based on a complex set of biomarkers</title><author>Fredriksson, Sten-Åke ; Wunschel, David S. ; Lindström, Susanne Wiklund ; Nilsson, Calle ; Wahl, Karen ; Åstot, Crister</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c439t-92c00b409f8e6ab9e7e6af23dee0f41a1a3aae16f79300ced19f471031bcc4c13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>BASIC BIOLOGICAL SCIENCES</topic><topic>Castor bean</topic><topic>Chemical attribution signatures</topic><topic>Multivariate statistics</topic><topic>Ricin production methods</topic><topic>Ricinus communis</topic><topic>Source attribution</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Fredriksson, Sten-Åke</creatorcontrib><creatorcontrib>Wunschel, David S.</creatorcontrib><creatorcontrib>Lindström, Susanne Wiklund</creatorcontrib><creatorcontrib>Nilsson, Calle</creatorcontrib><creatorcontrib>Wahl, Karen</creatorcontrib><creatorcontrib>Åstot, Crister</creatorcontrib><creatorcontrib>Pacific Northwest National Lab. (PNNL), Richland, WA (United States)</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV - Hybrid</collection><collection>OSTI.GOV</collection><jtitle>Talanta (Oxford)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Fredriksson, Sten-Åke</au><au>Wunschel, David S.</au><au>Lindström, Susanne Wiklund</au><au>Nilsson, Calle</au><au>Wahl, Karen</au><au>Åstot, Crister</au><aucorp>Pacific Northwest National Lab. (PNNL), Richland, WA (United States)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A ricin forensic profiling approach based on a complex set of biomarkers</atitle><jtitle>Talanta (Oxford)</jtitle><addtitle>Talanta</addtitle><date>2018-08-15</date><risdate>2018</risdate><volume>186</volume><spage>628</spage><epage>635</epage><pages>628-635</pages><issn>0039-9140</issn><eissn>1873-3573</eissn><abstract>A forensic method for the retrospective determination of preparation methods used for illicit ricin toxin production was developed. The method was based on a complex set of biomarkers, including carbohydrates, fatty acids, seed storage proteins, in combination with data on ricin and Ricinus communis agglutinin. The analyses were performed on samples prepared from four castor bean plant (R. communis) cultivars by four different sample preparation methods (PM1–PM4) ranging from simple disintegration of the castor beans to multi-step preparation methods including different protein precipitation methods. Comprehensive analytical data was collected by use of a range of analytical methods and robust orthogonal partial least squares-discriminant analysis- models (OPLS-DA) were constructed based on the calibration set. By the use of a decision tree and two OPLS-DA models, the sample preparation methods of test set samples were determined. The model statistics of the two models were good and a 100% rate of correct predictions of the test set was achieved.
[Display omitted]
•Retrospective determination of the methods used for ricin production.•Four ricin preparation methods and four castor bean ecotypes in calibration model.•Use of a complex set of chemical attribution signatures.•100% correct prediction of test set samples.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>29784413</pmid><doi>10.1016/j.talanta.2018.03.070</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0002-3713-1990</orcidid><orcidid>https://orcid.org/0000000237131990</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0039-9140 |
ispartof | Talanta (Oxford), 2018-08, Vol.186, p.628-635 |
issn | 0039-9140 1873-3573 |
language | eng |
recordid | cdi_osti_scitechconnect_1430520 |
source | Elsevier ScienceDirect Journals |
subjects | BASIC BIOLOGICAL SCIENCES Castor bean Chemical attribution signatures Multivariate statistics Ricin production methods Ricinus communis Source attribution |
title | A ricin forensic profiling approach based on a complex set of biomarkers |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-20T08%3A03%3A20IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_osti_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=A%20ricin%20forensic%20profiling%20approach%20based%20on%20a%20complex%20set%20of%20biomarkers&rft.jtitle=Talanta%20(Oxford)&rft.au=Fredriksson,%20Sten-%C3%85ke&rft.aucorp=Pacific%20Northwest%20National%20Lab.%20(PNNL),%20Richland,%20WA%20(United%20States)&rft.date=2018-08-15&rft.volume=186&rft.spage=628&rft.epage=635&rft.pages=628-635&rft.issn=0039-9140&rft.eissn=1873-3573&rft_id=info:doi/10.1016/j.talanta.2018.03.070&rft_dat=%3Cproquest_osti_%3E2042756594%3C/proquest_osti_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2042756594&rft_id=info:pmid/29784413&rft_els_id=S0039914018303102&rfr_iscdi=true |