X-ray diffraction analysis and in vitro characterization of the UAM2 protein from Oryza sativa
The role of seemingly non-enzymatic proteins in complexes interconverting UDP-arabinopyranose and UDP-arabinofuranose (UDP-arabinosemutases; UAMs) in the plant cytosol remains unknown. To shed light on their function, crystallographic and functional studies of the seemingly non-enzymatic UAM2 protei...
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Veröffentlicht in: | Acta crystallographica. Section F, Structural biology communications Structural biology communications, 2017-03, Vol.73 (4) |
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creator | Welner, Ditte Hededam Tsai, Alex Yi-Lin DeGiovanni, Andy M. Scheller, Henrik Vibe Adams, Paul D. |
description | The role of seemingly non-enzymatic proteins in complexes interconverting UDP-arabinopyranose and UDP-arabinofuranose (UDP-arabinosemutases; UAMs) in the plant cytosol remains unknown. To shed light on their function, crystallographic and functional studies of the seemingly non-enzymatic UAM2 protein fromOryza sativa(OsUAM2) were undertaken. Here, X-ray diffraction data are reported, as well as analysis of the oligomeric state in the crystal and in solution. OsUAM2 crystallizes readily but forms highly radiation-sensitive crystals with limited diffraction power, requiring careful low-dose vector data acquisition. Using size-exclusion chromatography, it is shown that the protein is monomeric in solution. Finally, limited proteolysis was employed to demonstrate DTT-enhanced proteolytic digestion, indicating the existence of at least one intramolecular disulfide bridge or, alternatively, a requirement for a structural metal ion. |
doi_str_mv | 10.1107/S2053230X17004587 |
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(LBNL), Berkeley, CA (United States)</creatorcontrib><title>X-ray diffraction analysis and in vitro characterization of the UAM2 protein from Oryza sativa</title><title>Acta crystallographica. Section F, Structural biology communications</title><description>The role of seemingly non-enzymatic proteins in complexes interconverting UDP-arabinopyranose and UDP-arabinofuranose (UDP-arabinosemutases; UAMs) in the plant cytosol remains unknown. To shed light on their function, crystallographic and functional studies of the seemingly non-enzymatic UAM2 protein fromOryza sativa(OsUAM2) were undertaken. Here, X-ray diffraction data are reported, as well as analysis of the oligomeric state in the crystal and in solution. OsUAM2 crystallizes readily but forms highly radiation-sensitive crystals with limited diffraction power, requiring careful low-dose vector data acquisition. Using size-exclusion chromatography, it is shown that the protein is monomeric in solution. Finally, limited proteolysis was employed to demonstrate DTT-enhanced proteolytic digestion, indicating the existence of at least one intramolecular disulfide bridge or, alternatively, a requirement for a structural metal ion.</description><subject>BASIC BIOLOGICAL SCIENCES</subject><subject>limited proteolysis</subject><subject>reversibly glycosylated polypeptide</subject><subject>UDP-arabinopyranose mutase</subject><subject>vector data collection</subject><issn>2053-230X</issn><issn>2053-230X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNqNy0FrAjEUBOBQKnSp_oDeHr2vfdm4RI9SWnqRHmxhT8ojm7ApmkgSFtZf34148OhphuEbxl44zjlH-batsBaVwIZLxEW9lA-syFOZt8eb_sRmMf4hYr5xuSrYrikDDdBaYwKpZL0DcnQYoo1jacE66G0KHlRHGehgz3Rh3kDqNPyuNxWcgk96pCb4I3yH4UwQR9XTlE0MHaKeXfOZvX5-_Lx_lT4mu4_KJq065Z3TKu25WAkupLgL_QN7h0tG</recordid><startdate>20170329</startdate><enddate>20170329</enddate><creator>Welner, Ditte Hededam</creator><creator>Tsai, Alex Yi-Lin</creator><creator>DeGiovanni, Andy M.</creator><creator>Scheller, Henrik Vibe</creator><creator>Adams, Paul D.</creator><general>International Union of Crystallography</general><scope>OIOZB</scope><scope>OTOTI</scope><orcidid>https://orcid.org/0000000267023560</orcidid><orcidid>https://orcid.org/0000000192974133</orcidid></search><sort><creationdate>20170329</creationdate><title>X-ray diffraction analysis and in vitro characterization of the UAM2 protein from Oryza sativa</title><author>Welner, Ditte Hededam ; Tsai, Alex Yi-Lin ; DeGiovanni, Andy M. ; Scheller, Henrik Vibe ; Adams, Paul D.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-osti_scitechconnect_13931373</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>BASIC BIOLOGICAL SCIENCES</topic><topic>limited proteolysis</topic><topic>reversibly glycosylated polypeptide</topic><topic>UDP-arabinopyranose mutase</topic><topic>vector data collection</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Welner, Ditte Hededam</creatorcontrib><creatorcontrib>Tsai, Alex Yi-Lin</creatorcontrib><creatorcontrib>DeGiovanni, Andy M.</creatorcontrib><creatorcontrib>Scheller, Henrik Vibe</creatorcontrib><creatorcontrib>Adams, Paul D.</creatorcontrib><creatorcontrib>Lawrence Berkeley National Lab. 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subjects | BASIC BIOLOGICAL SCIENCES limited proteolysis reversibly glycosylated polypeptide UDP-arabinopyranose mutase vector data collection |
title | X-ray diffraction analysis and in vitro characterization of the UAM2 protein from Oryza sativa |
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