Comparative analyses of two cryptic plasmids from Haemophilus somnus ( Histophilus somni)
Haemophilus somnus is an opportunistic bacterial pathogen capable of causing pneumonia, septicemia, and other systemic infections in bovines. An H. somnus isolate from bovine abortion (strain 649) was found to carry a ∼1.3 kb plasmid (pHS649) that contained partial homology to two previously sequenc...
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| Veröffentlicht in: | Plasmid 2006-05, Vol.55 (3), p.227-234 |
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| creator | Siddaramappa, Shivakumara Duncan, Alison J. Brettin, Thomas Inzana, Thomas J. |
| description | Haemophilus somnus is an opportunistic bacterial pathogen capable of causing pneumonia, septicemia, and other systemic infections in bovines. An
H. somnus isolate from bovine abortion (strain 649) was found to carry a ∼1.3
kb plasmid (pHS649) that contained partial homology to two previously sequenced
Haemophilus/
Histophilus plasmids by BLAST analyses. Sequence analysis of pHS649 identified a putative RepA protein with 48% similarity to the RepA protein of
Escherichia coli plasmid pKL1. A ∼5
kb plasmid (pHS129) from
H. somnus preputial isolate 129Pt was also sequenced and found to encode two copies of a putative RepB protein. Whereas pHS649 stably replicated in
E. coli DH5α, pHS129 did not. Genetic relatedness and possible replication mechanisms of these plasmids are described. |
| doi_str_mv | 10.1016/j.plasmid.2005.11.004 |
| format | Article |
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H. somnus isolate from bovine abortion (strain 649) was found to carry a ∼1.3
kb plasmid (pHS649) that contained partial homology to two previously sequenced
Haemophilus/
Histophilus plasmids by BLAST analyses. Sequence analysis of pHS649 identified a putative RepA protein with 48% similarity to the RepA protein of
Escherichia coli plasmid pKL1. A ∼5
kb plasmid (pHS129) from
H. somnus preputial isolate 129Pt was also sequenced and found to encode two copies of a putative RepB protein. Whereas pHS649 stably replicated in
E. coli DH5α, pHS129 did not. Genetic relatedness and possible replication mechanisms of these plasmids are described.</description><identifier>ISSN: 0147-619X</identifier><identifier>EISSN: 1095-9890</identifier><identifier>DOI: 10.1016/j.plasmid.2005.11.004</identifier><identifier>PMID: 16443273</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Amino Acid Sequence ; Animals ; Bacterial Proteins - genetics ; Bacterial Proteins - metabolism ; Base Sequence ; Cattle ; DNA Replication ; DNA, Bacterial - genetics ; Escherichia coli ; Female ; Genome ; Haemophilus ; Haemophilus Infections - microbiology ; Haemophilus Infections - veterinary ; Haemophilus somnus ; Haemophilus somnus - isolation & purification ; Histophilus ; Molecular Sequence Data ; Plasmids ; Plasmids - genetics ; Pregnancy ; RepA ; RepB ; Sequence Homology, Amino Acid ; Sequence Homology, Nucleic Acid</subject><ispartof>Plasmid, 2006-05, Vol.55 (3), p.227-234</ispartof><rights>2005</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c421t-a10d89097676012bc16c88277e9a3415d9b957d54496209a8b8f84f6ed754d243</citedby><cites>FETCH-LOGICAL-c421t-a10d89097676012bc16c88277e9a3415d9b957d54496209a8b8f84f6ed754d243</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.plasmid.2005.11.004$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>230,314,780,784,885,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16443273$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/biblio/1153539$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Siddaramappa, Shivakumara</creatorcontrib><creatorcontrib>Duncan, Alison J.</creatorcontrib><creatorcontrib>Brettin, Thomas</creatorcontrib><creatorcontrib>Inzana, Thomas J.</creatorcontrib><creatorcontrib>Joint Genome Institute (JGI)</creatorcontrib><title>Comparative analyses of two cryptic plasmids from Haemophilus somnus ( Histophilus somni)</title><title>Plasmid</title><addtitle>Plasmid</addtitle><description>Haemophilus somnus is an opportunistic bacterial pathogen capable of causing pneumonia, septicemia, and other systemic infections in bovines. An
H. somnus isolate from bovine abortion (strain 649) was found to carry a ∼1.3
kb plasmid (pHS649) that contained partial homology to two previously sequenced
Haemophilus/
Histophilus plasmids by BLAST analyses. Sequence analysis of pHS649 identified a putative RepA protein with 48% similarity to the RepA protein of
Escherichia coli plasmid pKL1. A ∼5
kb plasmid (pHS129) from
H. somnus preputial isolate 129Pt was also sequenced and found to encode two copies of a putative RepB protein. Whereas pHS649 stably replicated in
E. coli DH5α, pHS129 did not. Genetic relatedness and possible replication mechanisms of these plasmids are described.</description><subject>Amino Acid Sequence</subject><subject>Animals</subject><subject>Bacterial Proteins - genetics</subject><subject>Bacterial Proteins - metabolism</subject><subject>Base Sequence</subject><subject>Cattle</subject><subject>DNA Replication</subject><subject>DNA, Bacterial - genetics</subject><subject>Escherichia coli</subject><subject>Female</subject><subject>Genome</subject><subject>Haemophilus</subject><subject>Haemophilus Infections - microbiology</subject><subject>Haemophilus Infections - veterinary</subject><subject>Haemophilus somnus</subject><subject>Haemophilus somnus - isolation & purification</subject><subject>Histophilus</subject><subject>Molecular Sequence Data</subject><subject>Plasmids</subject><subject>Plasmids - genetics</subject><subject>Pregnancy</subject><subject>RepA</subject><subject>RepB</subject><subject>Sequence Homology, Amino Acid</subject><subject>Sequence Homology, Nucleic Acid</subject><issn>0147-619X</issn><issn>1095-9890</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU1r3DAQhkVpaTZpf0KL6CG0B7saWx_WqZSl6QYCvbTQnoRWkokW23IlbcL--8isob3lNCCe0TMzL0LvgNRAgH8-1POg0-ht3RDCaoCaEPoCbYBIVslOkpdoQ4CKioP8fYEuUzoQQngD_DW6AE5p24h2g_5swzjrqLN_cFhPejgll3DocX4M2MTTnL3BqynhPoYR77Qbw3zvh2PCKYxTKR_xzqf8_6P_9Aa96vWQ3Nu1XqFfN99-bnfV3Y_vt9uvd5WhDeRKA7FlWim44ASavQFuuq4RwkndUmBW7iUTllEqeUOk7vZd39GeOysYtQ1tr9CH878hZa-S8dmZexOmyZmsAFjLWlmg6zM0x_D36FJWo0_GDYOeXDgmxUVxUtk-C4IAIYlYtOwMmhhSiq5Xc_SjjicFRC0JqYNa76aWhMooqiRU-t6vguN-dPZf1xpJAb6cAVeO9uBdXHZyk3HWx2UlG_wziiewjaO4</recordid><startdate>20060501</startdate><enddate>20060501</enddate><creator>Siddaramappa, Shivakumara</creator><creator>Duncan, Alison J.</creator><creator>Brettin, Thomas</creator><creator>Inzana, Thomas J.</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>OTOTI</scope></search><sort><creationdate>20060501</creationdate><title>Comparative analyses of two cryptic plasmids from Haemophilus somnus ( Histophilus somni)</title><author>Siddaramappa, Shivakumara ; Duncan, Alison J. ; Brettin, Thomas ; Inzana, Thomas J.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c421t-a10d89097676012bc16c88277e9a3415d9b957d54496209a8b8f84f6ed754d243</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>Amino Acid Sequence</topic><topic>Animals</topic><topic>Bacterial Proteins - genetics</topic><topic>Bacterial Proteins - metabolism</topic><topic>Base Sequence</topic><topic>Cattle</topic><topic>DNA Replication</topic><topic>DNA, Bacterial - genetics</topic><topic>Escherichia coli</topic><topic>Female</topic><topic>Genome</topic><topic>Haemophilus</topic><topic>Haemophilus Infections - microbiology</topic><topic>Haemophilus Infections - veterinary</topic><topic>Haemophilus somnus</topic><topic>Haemophilus somnus - isolation & purification</topic><topic>Histophilus</topic><topic>Molecular Sequence Data</topic><topic>Plasmids</topic><topic>Plasmids - genetics</topic><topic>Pregnancy</topic><topic>RepA</topic><topic>RepB</topic><topic>Sequence Homology, Amino Acid</topic><topic>Sequence Homology, Nucleic Acid</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Siddaramappa, Shivakumara</creatorcontrib><creatorcontrib>Duncan, Alison J.</creatorcontrib><creatorcontrib>Brettin, Thomas</creatorcontrib><creatorcontrib>Inzana, Thomas J.</creatorcontrib><creatorcontrib>Joint Genome Institute (JGI)</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV</collection><jtitle>Plasmid</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Siddaramappa, Shivakumara</au><au>Duncan, Alison J.</au><au>Brettin, Thomas</au><au>Inzana, Thomas J.</au><aucorp>Joint Genome Institute (JGI)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Comparative analyses of two cryptic plasmids from Haemophilus somnus ( Histophilus somni)</atitle><jtitle>Plasmid</jtitle><addtitle>Plasmid</addtitle><date>2006-05-01</date><risdate>2006</risdate><volume>55</volume><issue>3</issue><spage>227</spage><epage>234</epage><pages>227-234</pages><issn>0147-619X</issn><eissn>1095-9890</eissn><abstract>Haemophilus somnus is an opportunistic bacterial pathogen capable of causing pneumonia, septicemia, and other systemic infections in bovines. An
H. somnus isolate from bovine abortion (strain 649) was found to carry a ∼1.3
kb plasmid (pHS649) that contained partial homology to two previously sequenced
Haemophilus/
Histophilus plasmids by BLAST analyses. Sequence analysis of pHS649 identified a putative RepA protein with 48% similarity to the RepA protein of
Escherichia coli plasmid pKL1. A ∼5
kb plasmid (pHS129) from
H. somnus preputial isolate 129Pt was also sequenced and found to encode two copies of a putative RepB protein. Whereas pHS649 stably replicated in
E. coli DH5α, pHS129 did not. Genetic relatedness and possible replication mechanisms of these plasmids are described.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>16443273</pmid><doi>10.1016/j.plasmid.2005.11.004</doi><tpages>8</tpages></addata></record> |
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| ispartof | Plasmid, 2006-05, Vol.55 (3), p.227-234 |
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| source | MEDLINE; Access via ScienceDirect (Elsevier) |
| subjects | Amino Acid Sequence Animals Bacterial Proteins - genetics Bacterial Proteins - metabolism Base Sequence Cattle DNA Replication DNA, Bacterial - genetics Escherichia coli Female Genome Haemophilus Haemophilus Infections - microbiology Haemophilus Infections - veterinary Haemophilus somnus Haemophilus somnus - isolation & purification Histophilus Molecular Sequence Data Plasmids Plasmids - genetics Pregnancy RepA RepB Sequence Homology, Amino Acid Sequence Homology, Nucleic Acid |
| title | Comparative analyses of two cryptic plasmids from Haemophilus somnus ( Histophilus somni) |
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