FundusQ-Net: A regression quality assessment deep learning algorithm for fundus images quality grading
OBJECTIVE: Ophthalmological pathologies such as glaucoma, diabetic retinopathy and age-related macular degeneration are major causes of blindness and vision impairment. There is a need for novel decision support tools that can simplify and speed up the diagnosis of these pathologies. A key step in t...
Gespeichert in:
Veröffentlicht in: | COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023-09, Vol.239 |
---|---|
Hauptverfasser: | , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | |
---|---|
container_issue | |
container_start_page | |
container_title | COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE |
container_volume | 239 |
creator | Abramovich, Or Pizem, Hadas Van Eijgen, Jan Oren, Ilan Melamed, Joshua Stalmans, Ingeborg Blumenthal, Eytan Z Behar, Joachim A |
description | OBJECTIVE: Ophthalmological pathologies such as glaucoma, diabetic retinopathy and age-related macular degeneration are major causes of blindness and vision impairment. There is a need for novel decision support tools that can simplify and speed up the diagnosis of these pathologies. A key step in this process is to automatically estimate the quality of the fundus images to make sure these are interpretable by a human operator or a machine learning model. We present a novel fundus image quality scale and deep learning (DL) model that can estimate fundus image quality relative to this new scale. METHODS: A total of 1245 images were graded for quality by two ophthalmologists within the range 1-10, with a resolution of 0.5. A DL regression model was trained for fundus image quality assessment. The architecture used was Inception-V3. The model was developed using a total of 89,947 images from 6 databases, of which 1245 were labeled by the specialists and the remaining 88,702 images were used for pre-training and semi-supervised learning. The final DL model was evaluated on an internal test set (n=209) as well as an external test set (n=194). RESULTS: The final DL model, denoted FundusQ-Net, achieved a mean absolute error of 0.61 (0.54-0.68) on the internal test set. When evaluated as a binary classification model on the public DRIMDB database as an external test set the model obtained an accuracy of 99%. SIGNIFICANCE: the proposed algorithm provides a new robust tool for automated quality grading of fundus images. |
format | Article |
fullrecord | <record><control><sourceid>kuleuven</sourceid><recordid>TN_cdi_kuleuven_dspace_20_500_12942_743166</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>20_500_12942_743166</sourcerecordid><originalsourceid>FETCH-kuleuven_dspace_20_500_12942_7431663</originalsourceid><addsrcrecordid>eNqVjM2KwjAURrMYwfrzDnc9UElTG9HdIFNmJQjuQ7C3MZqmTm4i49srg7jW1Qcf55wPlvFCLnMh-WLIRkRHzrmoKpmxtk6-SbTNNxhX8AUBTUAi23v4TdrZeAVNdH869BEaxDM41MFbb0A70wcbDx20fYD2PwS20wbpKZugmzs7YYNWO8LpY8fss_7erX_yU3KYLuhVQ2e9RyW4qjhXhVjOhVrMy0LKcsxmL8Mq_sXyrfoN8nNYYQ</addsrcrecordid><sourcetype>Institutional Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>FundusQ-Net: A regression quality assessment deep learning algorithm for fundus images quality grading</title><source>Lirias (KU Leuven Association)</source><source>Elsevier ScienceDirect Journals</source><creator>Abramovich, Or ; Pizem, Hadas ; Van Eijgen, Jan ; Oren, Ilan ; Melamed, Joshua ; Stalmans, Ingeborg ; Blumenthal, Eytan Z ; Behar, Joachim A</creator><creatorcontrib>Abramovich, Or ; Pizem, Hadas ; Van Eijgen, Jan ; Oren, Ilan ; Melamed, Joshua ; Stalmans, Ingeborg ; Blumenthal, Eytan Z ; Behar, Joachim A</creatorcontrib><description>OBJECTIVE: Ophthalmological pathologies such as glaucoma, diabetic retinopathy and age-related macular degeneration are major causes of blindness and vision impairment. There is a need for novel decision support tools that can simplify and speed up the diagnosis of these pathologies. A key step in this process is to automatically estimate the quality of the fundus images to make sure these are interpretable by a human operator or a machine learning model. We present a novel fundus image quality scale and deep learning (DL) model that can estimate fundus image quality relative to this new scale. METHODS: A total of 1245 images were graded for quality by two ophthalmologists within the range 1-10, with a resolution of 0.5. A DL regression model was trained for fundus image quality assessment. The architecture used was Inception-V3. The model was developed using a total of 89,947 images from 6 databases, of which 1245 were labeled by the specialists and the remaining 88,702 images were used for pre-training and semi-supervised learning. The final DL model was evaluated on an internal test set (n=209) as well as an external test set (n=194). RESULTS: The final DL model, denoted FundusQ-Net, achieved a mean absolute error of 0.61 (0.54-0.68) on the internal test set. When evaluated as a binary classification model on the public DRIMDB database as an external test set the model obtained an accuracy of 99%. SIGNIFICANCE: the proposed algorithm provides a new robust tool for automated quality grading of fundus images.</description><identifier>ISSN: 0169-2607</identifier><language>eng</language><publisher>ELSEVIER IRELAND LTD</publisher><ispartof>COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2023-09, Vol.239</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,315,776,780,27837</link.rule.ids></links><search><creatorcontrib>Abramovich, Or</creatorcontrib><creatorcontrib>Pizem, Hadas</creatorcontrib><creatorcontrib>Van Eijgen, Jan</creatorcontrib><creatorcontrib>Oren, Ilan</creatorcontrib><creatorcontrib>Melamed, Joshua</creatorcontrib><creatorcontrib>Stalmans, Ingeborg</creatorcontrib><creatorcontrib>Blumenthal, Eytan Z</creatorcontrib><creatorcontrib>Behar, Joachim A</creatorcontrib><title>FundusQ-Net: A regression quality assessment deep learning algorithm for fundus images quality grading</title><title>COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE</title><description>OBJECTIVE: Ophthalmological pathologies such as glaucoma, diabetic retinopathy and age-related macular degeneration are major causes of blindness and vision impairment. There is a need for novel decision support tools that can simplify and speed up the diagnosis of these pathologies. A key step in this process is to automatically estimate the quality of the fundus images to make sure these are interpretable by a human operator or a machine learning model. We present a novel fundus image quality scale and deep learning (DL) model that can estimate fundus image quality relative to this new scale. METHODS: A total of 1245 images were graded for quality by two ophthalmologists within the range 1-10, with a resolution of 0.5. A DL regression model was trained for fundus image quality assessment. The architecture used was Inception-V3. The model was developed using a total of 89,947 images from 6 databases, of which 1245 were labeled by the specialists and the remaining 88,702 images were used for pre-training and semi-supervised learning. The final DL model was evaluated on an internal test set (n=209) as well as an external test set (n=194). RESULTS: The final DL model, denoted FundusQ-Net, achieved a mean absolute error of 0.61 (0.54-0.68) on the internal test set. When evaluated as a binary classification model on the public DRIMDB database as an external test set the model obtained an accuracy of 99%. SIGNIFICANCE: the proposed algorithm provides a new robust tool for automated quality grading of fundus images.</description><issn>0169-2607</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>FZOIL</sourceid><recordid>eNqVjM2KwjAURrMYwfrzDnc9UElTG9HdIFNmJQjuQ7C3MZqmTm4i49srg7jW1Qcf55wPlvFCLnMh-WLIRkRHzrmoKpmxtk6-SbTNNxhX8AUBTUAi23v4TdrZeAVNdH869BEaxDM41MFbb0A70wcbDx20fYD2PwS20wbpKZugmzs7YYNWO8LpY8fss_7erX_yU3KYLuhVQ2e9RyW4qjhXhVjOhVrMy0LKcsxmL8Mq_sXyrfoN8nNYYQ</recordid><startdate>202309</startdate><enddate>202309</enddate><creator>Abramovich, Or</creator><creator>Pizem, Hadas</creator><creator>Van Eijgen, Jan</creator><creator>Oren, Ilan</creator><creator>Melamed, Joshua</creator><creator>Stalmans, Ingeborg</creator><creator>Blumenthal, Eytan Z</creator><creator>Behar, Joachim A</creator><general>ELSEVIER IRELAND LTD</general><scope>FZOIL</scope></search><sort><creationdate>202309</creationdate><title>FundusQ-Net: A regression quality assessment deep learning algorithm for fundus images quality grading</title><author>Abramovich, Or ; Pizem, Hadas ; Van Eijgen, Jan ; Oren, Ilan ; Melamed, Joshua ; Stalmans, Ingeborg ; Blumenthal, Eytan Z ; Behar, Joachim A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-kuleuven_dspace_20_500_12942_7431663</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Abramovich, Or</creatorcontrib><creatorcontrib>Pizem, Hadas</creatorcontrib><creatorcontrib>Van Eijgen, Jan</creatorcontrib><creatorcontrib>Oren, Ilan</creatorcontrib><creatorcontrib>Melamed, Joshua</creatorcontrib><creatorcontrib>Stalmans, Ingeborg</creatorcontrib><creatorcontrib>Blumenthal, Eytan Z</creatorcontrib><creatorcontrib>Behar, Joachim A</creatorcontrib><collection>Lirias (KU Leuven Association)</collection><jtitle>COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Abramovich, Or</au><au>Pizem, Hadas</au><au>Van Eijgen, Jan</au><au>Oren, Ilan</au><au>Melamed, Joshua</au><au>Stalmans, Ingeborg</au><au>Blumenthal, Eytan Z</au><au>Behar, Joachim A</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>FundusQ-Net: A regression quality assessment deep learning algorithm for fundus images quality grading</atitle><jtitle>COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE</jtitle><date>2023-09</date><risdate>2023</risdate><volume>239</volume><issn>0169-2607</issn><abstract>OBJECTIVE: Ophthalmological pathologies such as glaucoma, diabetic retinopathy and age-related macular degeneration are major causes of blindness and vision impairment. There is a need for novel decision support tools that can simplify and speed up the diagnosis of these pathologies. A key step in this process is to automatically estimate the quality of the fundus images to make sure these are interpretable by a human operator or a machine learning model. We present a novel fundus image quality scale and deep learning (DL) model that can estimate fundus image quality relative to this new scale. METHODS: A total of 1245 images were graded for quality by two ophthalmologists within the range 1-10, with a resolution of 0.5. A DL regression model was trained for fundus image quality assessment. The architecture used was Inception-V3. The model was developed using a total of 89,947 images from 6 databases, of which 1245 were labeled by the specialists and the remaining 88,702 images were used for pre-training and semi-supervised learning. The final DL model was evaluated on an internal test set (n=209) as well as an external test set (n=194). RESULTS: The final DL model, denoted FundusQ-Net, achieved a mean absolute error of 0.61 (0.54-0.68) on the internal test set. When evaluated as a binary classification model on the public DRIMDB database as an external test set the model obtained an accuracy of 99%. SIGNIFICANCE: the proposed algorithm provides a new robust tool for automated quality grading of fundus images.</abstract><pub>ELSEVIER IRELAND LTD</pub></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0169-2607 |
ispartof | COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2023-09, Vol.239 |
issn | 0169-2607 |
language | eng |
recordid | cdi_kuleuven_dspace_20_500_12942_743166 |
source | Lirias (KU Leuven Association); Elsevier ScienceDirect Journals |
title | FundusQ-Net: A regression quality assessment deep learning algorithm for fundus images quality grading |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-28T15%3A36%3A55IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-kuleuven&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=FundusQ-Net:%20A%20regression%20quality%20assessment%20deep%20learning%20algorithm%20for%20fundus%20images%20quality%20grading&rft.jtitle=COMPUTER%20METHODS%20AND%20PROGRAMS%20IN%20BIOMEDICINE&rft.au=Abramovich,%20Or&rft.date=2023-09&rft.volume=239&rft.issn=0169-2607&rft_id=info:doi/&rft_dat=%3Ckuleuven%3E20_500_12942_743166%3C/kuleuven%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true |