Complete genome sequence of Pediococcus acidilactici CACC 537 isolated from canine
Pedi coccus acidilactici CACC 537 was isolated from canine feces and reported to have probiotic properties. We aimed to characterize the potential probiotic properties of this strain by functional genomic analysis. Complete genome sequencing of P. acidilactici CACC 537 was performed using a PacBio R...
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Veröffentlicht in: | Journal of animal science and technology 2023-09, Vol.65 (5), p.1105-1109 |
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creator | Jung-ae Kim Hyun-jun Jang Dae-hyuk Kim Youn Kyoung Son Yangseon Kim |
description | Pedi coccus acidilactici CACC 537 was isolated from canine feces and reported to have probiotic properties. We aimed to characterize the potential probiotic properties of this strain by functional genomic analysis. Complete genome sequencing of P. acidilactici CACC 537 was performed using a PacBio RSII and Illumina platform, and contained one circular chromosome (2.0 Mb) with a 42% G + C content. The sequences were annotation revealed 1,897 protein-coding sequences, 15 rRNAs, and 56 tRNAs. It was determined that P. acidilactici CACC 537 genome carries genes known to be involved in the immune system, defense mechanisms, restriction-modification (R-M), and the CRISPR system. CACC 537 was shown to be beneficial in preventing pathogen infection during the fermentation process, help host immunity, and maintain intestinal health. These results provide for a comprehensive understanding of P. acidilactici and the development of industrial probiotic feed additives that can help improve host immunity and intestinal health. |
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We aimed to characterize the potential probiotic properties of this strain by functional genomic analysis. Complete genome sequencing of P. acidilactici CACC 537 was performed using a PacBio RSII and Illumina platform, and contained one circular chromosome (2.0 Mb) with a 42% G + C content. The sequences were annotation revealed 1,897 protein-coding sequences, 15 rRNAs, and 56 tRNAs. It was determined that P. acidilactici CACC 537 genome carries genes known to be involved in the immune system, defense mechanisms, restriction-modification (R-M), and the CRISPR system. CACC 537 was shown to be beneficial in preventing pathogen infection during the fermentation process, help host immunity, and maintain intestinal health. 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We aimed to characterize the potential probiotic properties of this strain by functional genomic analysis. Complete genome sequencing of P. acidilactici CACC 537 was performed using a PacBio RSII and Illumina platform, and contained one circular chromosome (2.0 Mb) with a 42% G + C content. The sequences were annotation revealed 1,897 protein-coding sequences, 15 rRNAs, and 56 tRNAs. It was determined that P. acidilactici CACC 537 genome carries genes known to be involved in the immune system, defense mechanisms, restriction-modification (R-M), and the CRISPR system. CACC 537 was shown to be beneficial in preventing pathogen infection during the fermentation process, help host immunity, and maintain intestinal health. These results provide for a comprehensive understanding of P. acidilactici and the development of industrial probiotic feed additives that can help improve host immunity and intestinal health.</description><subject>Canine</subject><subject>Pediococcus acidilactici</subject><subject>Whole-genome sequencing</subject><issn>2672-0191</issn><issn>2093-6281</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>JDI</sourceid><recordid>eNo9kD9rwzAUxE1poSHNJ-iipaPh6Umy5dGI_k0gpWQ3svRURGwrjZyh376Glk53cL-74a6KFUIjygo1v158VWMJvOG3xSbn2INE4LpRelV8mDSeBpqJfdKURmKZvi40OWIpsHfyMbnk3CUz66KPg3VzdJGZ1himRM1iToOdybNwTiNzdooT3RU3wQ6ZNn-6Lg5PjwfzUu72z6-m3ZVHBbrUQWvAEAid8tY78r0kGRpAhN5CcCgbbLhCqSsplkzUoucal4IAC1asi4ff2WPMc-wmn4furd3uEVAIUKquaiGlXrj7fy53p3Mc7fm7k8sHEoT4AbsnVBM</recordid><startdate>20230901</startdate><enddate>20230901</enddate><creator>Jung-ae Kim</creator><creator>Hyun-jun Jang</creator><creator>Dae-hyuk Kim</creator><creator>Youn Kyoung Son</creator><creator>Yangseon Kim</creator><general>한국축산학회</general><scope>HZB</scope><scope>Q5X</scope><scope>JDI</scope></search><sort><creationdate>20230901</creationdate><title>Complete genome sequence of Pediococcus acidilactici CACC 537 isolated from canine</title><author>Jung-ae Kim ; Hyun-jun Jang ; Dae-hyuk Kim ; Youn Kyoung Son ; Yangseon Kim</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-k508-8f8802ffe2c5dadcedb4e4f90220ba0fc2492915248643b4e373b182fe230a0a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>kor</language><creationdate>2023</creationdate><topic>Canine</topic><topic>Pediococcus acidilactici</topic><topic>Whole-genome sequencing</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jung-ae Kim</creatorcontrib><creatorcontrib>Hyun-jun Jang</creatorcontrib><creatorcontrib>Dae-hyuk Kim</creatorcontrib><creatorcontrib>Youn Kyoung Son</creatorcontrib><creatorcontrib>Yangseon Kim</creatorcontrib><collection>Korean Studies Information Service System (KISS)</collection><collection>Korean Studies Information Service System (KISS) B-Type</collection><collection>KoreaScience</collection><jtitle>Journal of animal science and technology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jung-ae Kim</au><au>Hyun-jun Jang</au><au>Dae-hyuk Kim</au><au>Youn Kyoung Son</au><au>Yangseon Kim</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete genome sequence of Pediococcus acidilactici CACC 537 isolated from canine</atitle><jtitle>Journal of animal science and technology</jtitle><addtitle>한국축산학회지</addtitle><date>2023-09-01</date><risdate>2023</risdate><volume>65</volume><issue>5</issue><spage>1105</spage><epage>1109</epage><pages>1105-1109</pages><issn>2672-0191</issn><eissn>2093-6281</eissn><abstract>Pedi coccus acidilactici CACC 537 was isolated from canine feces and reported to have probiotic properties. We aimed to characterize the potential probiotic properties of this strain by functional genomic analysis. Complete genome sequencing of P. acidilactici CACC 537 was performed using a PacBio RSII and Illumina platform, and contained one circular chromosome (2.0 Mb) with a 42% G + C content. The sequences were annotation revealed 1,897 protein-coding sequences, 15 rRNAs, and 56 tRNAs. It was determined that P. acidilactici CACC 537 genome carries genes known to be involved in the immune system, defense mechanisms, restriction-modification (R-M), and the CRISPR system. CACC 537 was shown to be beneficial in preventing pathogen infection during the fermentation process, help host immunity, and maintain intestinal health. These results provide for a comprehensive understanding of P. acidilactici and the development of industrial probiotic feed additives that can help improve host immunity and intestinal health.</abstract><pub>한국축산학회</pub><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Canine Pediococcus acidilactici Whole-genome sequencing |
title | Complete genome sequence of Pediococcus acidilactici CACC 537 isolated from canine |
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