Myogenic Factors That Regulate Expression of Muscle-Specific MicroRNAs
Since their discovery as key regulators of early animal development, microRNAs now are recognized as widespread regulators of gene expression. Despite their abundance, little is known regarding the regulation of microRNA biogenesis. We show that three highly conserved muscle-specific microRNAs, miR-...
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Veröffentlicht in: | Proceedings of the National Academy of Sciences - PNAS 2006-06, Vol.103 (23), p.8721-8726 |
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description | Since their discovery as key regulators of early animal development, microRNAs now are recognized as widespread regulators of gene expression. Despite their abundance, little is known regarding the regulation of microRNA biogenesis. We show that three highly conserved muscle-specific microRNAs, miR-1, miR-133 and miR-206, are robustly induced during the myoblast-myotube transition, both in primary human myoblasts and in the mouse mesenchymal$C_{2}C_{12}$stem cell line. These microRNAs were not induced during osteogenic conversion of$C_{2}C_{12}$cells. Moreover, both loci encoding miR-1, miR-l-1, and miR-1-2, and two of the three encoding miR-133, miR-133a-1 and miR-133a-2, are strongly induced during myogenesis. Some of the induced microRNAs are in intergenic regions, whereas two are transcribed in the opposite direction to the nonmuscle-specific gene in which they are embedded. By using CHIP analysis, we demonstrate that the myogenic factors Myogenin and MyoD bind to regions upstream of these microRNAs and, therefore, are likely to regulate their expression. Because miR-1 and miR-206 are predicted to repress similar mRNA targets, our work suggests that induction of these microRNAs is important in regulating the expression of muscle-specific proteins. |
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Despite their abundance, little is known regarding the regulation of microRNA biogenesis. We show that three highly conserved muscle-specific microRNAs, miR-1, miR-133 and miR-206, are robustly induced during the myoblast-myotube transition, both in primary human myoblasts and in the mouse mesenchymal$C_{2}C_{12}$stem cell line. These microRNAs were not induced during osteogenic conversion of$C_{2}C_{12}$cells. Moreover, both loci encoding miR-1, miR-l-1, and miR-1-2, and two of the three encoding miR-133, miR-133a-1 and miR-133a-2, are strongly induced during myogenesis. Some of the induced microRNAs are in intergenic regions, whereas two are transcribed in the opposite direction to the nonmuscle-specific gene in which they are embedded. By using CHIP analysis, we demonstrate that the myogenic factors Myogenin and MyoD bind to regions upstream of these microRNAs and, therefore, are likely to regulate their expression. Because miR-1 and miR-206 are predicted to repress similar mRNA targets, our work suggests that induction of these microRNAs is important in regulating the expression of muscle-specific proteins.</description><identifier>ISSN: 0027-8424</identifier><identifier>EISSN: 1091-6490</identifier><identifier>DOI: 10.1073/pnas.0602831103</identifier><identifier>PMID: 16731620</identifier><language>eng</language><publisher>United States: National Academy of Sciences</publisher><subject>Animals ; Biochemistry ; Biological Sciences ; Cells, Cultured ; Cellular differentiation ; Chromosomes, Mammalian - genetics ; Exons - genetics ; Gene expression ; Gene Expression Regulation ; Genes ; Genetic loci ; Genome - genetics ; Humans ; Mice ; MicroRNA ; MicroRNAs - genetics ; MicroRNAs - metabolism ; Muscle development ; Muscle fibers ; Muscles - metabolism ; Myoblasts ; Myoblasts - metabolism ; MyoD Protein - metabolism ; Myogenin - metabolism ; Organ Specificity ; Polymerase chain reaction ; Protein Binding ; Ribonucleic acid ; RNA ; Stem cells ; Time Factors</subject><ispartof>Proceedings of the National Academy of Sciences - PNAS, 2006-06, Vol.103 (23), p.8721-8726</ispartof><rights>Copyright 2006 National Academy of Sciences of the United States of America</rights><rights>Copyright National Academy of Sciences Jun 6, 2006</rights><rights>2006 by The National Academy of Sciences of the USA 2006</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c528t-b860508da521ca5af813e9a927bbbd365a2892eee90814bc727594be27c1ba5d3</citedby><cites>FETCH-LOGICAL-c528t-b860508da521ca5af813e9a927bbbd365a2892eee90814bc727594be27c1ba5d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://www.pnas.org/content/103/23.cover.gif</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/30050256$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/30050256$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,727,780,784,803,885,27924,27925,53791,53793,58017,58250</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16731620$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Rao, Prakash K.</creatorcontrib><creatorcontrib>Kumar, Roshan M.</creatorcontrib><creatorcontrib>Farkhondeh, Mina</creatorcontrib><creatorcontrib>Baskerville, Scott</creatorcontrib><creatorcontrib>Lodish, Harvey F.</creatorcontrib><title>Myogenic Factors That Regulate Expression of Muscle-Specific MicroRNAs</title><title>Proceedings of the National Academy of Sciences - PNAS</title><addtitle>Proc Natl Acad Sci U S A</addtitle><description>Since their discovery as key regulators of early animal development, microRNAs now are recognized as widespread regulators of gene expression. Despite their abundance, little is known regarding the regulation of microRNA biogenesis. We show that three highly conserved muscle-specific microRNAs, miR-1, miR-133 and miR-206, are robustly induced during the myoblast-myotube transition, both in primary human myoblasts and in the mouse mesenchymal$C_{2}C_{12}$stem cell line. These microRNAs were not induced during osteogenic conversion of$C_{2}C_{12}$cells. Moreover, both loci encoding miR-1, miR-l-1, and miR-1-2, and two of the three encoding miR-133, miR-133a-1 and miR-133a-2, are strongly induced during myogenesis. Some of the induced microRNAs are in intergenic regions, whereas two are transcribed in the opposite direction to the nonmuscle-specific gene in which they are embedded. By using CHIP analysis, we demonstrate that the myogenic factors Myogenin and MyoD bind to regions upstream of these microRNAs and, therefore, are likely to regulate their expression. Because miR-1 and miR-206 are predicted to repress similar mRNA targets, our work suggests that induction of these microRNAs is important in regulating the expression of muscle-specific proteins.</description><subject>Animals</subject><subject>Biochemistry</subject><subject>Biological Sciences</subject><subject>Cells, Cultured</subject><subject>Cellular differentiation</subject><subject>Chromosomes, Mammalian - genetics</subject><subject>Exons - genetics</subject><subject>Gene expression</subject><subject>Gene Expression Regulation</subject><subject>Genes</subject><subject>Genetic loci</subject><subject>Genome - genetics</subject><subject>Humans</subject><subject>Mice</subject><subject>MicroRNA</subject><subject>MicroRNAs - genetics</subject><subject>MicroRNAs - metabolism</subject><subject>Muscle development</subject><subject>Muscle fibers</subject><subject>Muscles - metabolism</subject><subject>Myoblasts</subject><subject>Myoblasts - metabolism</subject><subject>MyoD Protein - metabolism</subject><subject>Myogenin - metabolism</subject><subject>Organ Specificity</subject><subject>Polymerase chain reaction</subject><subject>Protein Binding</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>Stem cells</subject><subject>Time Factors</subject><issn>0027-8424</issn><issn>1091-6490</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFks9v0zAYhi0EYt3gzAmIOCAu2T7b8a8L0jStgLSCNMbZctwvXao0DnaCtv9-rlqtwAFOPvh5H_n7XhPyisIpBcXPht6lU5DANKcU-BMyo2BoKSsDT8kMgKlSV6w6IscprQHACA3PyRGVilPJYEbmi_uwwr71xdz5McRU3Ny6sbjG1dS5EYvLuyFiSm3oi9AUiyn5DsvvA_q2yZlF62O4_nqeXpBnjesSvtyfJ-TH_PLm4nN59e3Tl4vzq9ILpsey1hIE6KUTjHonXKMpR-MMU3VdL7kUjmnDENGAplXtFVPCVDUy5WntxJKfkI877zDVG1x67MfoOjvEduPivQ2utX_e9O2tXYVfllaayUpkwfu9IIafE6bRbtrksetcj2FKVmqotDTyvyBVjHNOt8Z3f4HrMMU-b8EyoDxPylmGznZQ3ldKEZvHJ1Ow2ybttkl7aDIn3vw-6YHfV5eBD3tgmzzouGXcasWobaauG_FuzOjbf6OZeL0j1il_gkeEQ66LCckfAFc-uxI</recordid><startdate>20060606</startdate><enddate>20060606</enddate><creator>Rao, Prakash K.</creator><creator>Kumar, Roshan M.</creator><creator>Farkhondeh, Mina</creator><creator>Baskerville, Scott</creator><creator>Lodish, Harvey F.</creator><general>National Academy of Sciences</general><general>National Acad Sciences</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20060606</creationdate><title>Myogenic Factors That Regulate Expression of Muscle-Specific MicroRNAs</title><author>Rao, Prakash K. ; Kumar, Roshan M. ; Farkhondeh, Mina ; Baskerville, Scott ; Lodish, Harvey F.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c528t-b860508da521ca5af813e9a927bbbd365a2892eee90814bc727594be27c1ba5d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>Animals</topic><topic>Biochemistry</topic><topic>Biological Sciences</topic><topic>Cells, Cultured</topic><topic>Cellular differentiation</topic><topic>Chromosomes, Mammalian - genetics</topic><topic>Exons - genetics</topic><topic>Gene expression</topic><topic>Gene Expression Regulation</topic><topic>Genes</topic><topic>Genetic loci</topic><topic>Genome - genetics</topic><topic>Humans</topic><topic>Mice</topic><topic>MicroRNA</topic><topic>MicroRNAs - genetics</topic><topic>MicroRNAs - metabolism</topic><topic>Muscle development</topic><topic>Muscle fibers</topic><topic>Muscles - metabolism</topic><topic>Myoblasts</topic><topic>Myoblasts - metabolism</topic><topic>MyoD Protein - metabolism</topic><topic>Myogenin - metabolism</topic><topic>Organ Specificity</topic><topic>Polymerase chain reaction</topic><topic>Protein Binding</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>Stem cells</topic><topic>Time Factors</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Rao, Prakash K.</creatorcontrib><creatorcontrib>Kumar, Roshan M.</creatorcontrib><creatorcontrib>Farkhondeh, Mina</creatorcontrib><creatorcontrib>Baskerville, Scott</creatorcontrib><creatorcontrib>Lodish, Harvey F.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Rao, Prakash K.</au><au>Kumar, Roshan M.</au><au>Farkhondeh, Mina</au><au>Baskerville, Scott</au><au>Lodish, Harvey F.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Myogenic Factors That Regulate Expression of Muscle-Specific MicroRNAs</atitle><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle><addtitle>Proc Natl Acad Sci U S A</addtitle><date>2006-06-06</date><risdate>2006</risdate><volume>103</volume><issue>23</issue><spage>8721</spage><epage>8726</epage><pages>8721-8726</pages><issn>0027-8424</issn><eissn>1091-6490</eissn><abstract>Since their discovery as key regulators of early animal development, microRNAs now are recognized as widespread regulators of gene expression. 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subjects | Animals Biochemistry Biological Sciences Cells, Cultured Cellular differentiation Chromosomes, Mammalian - genetics Exons - genetics Gene expression Gene Expression Regulation Genes Genetic loci Genome - genetics Humans Mice MicroRNA MicroRNAs - genetics MicroRNAs - metabolism Muscle development Muscle fibers Muscles - metabolism Myoblasts Myoblasts - metabolism MyoD Protein - metabolism Myogenin - metabolism Organ Specificity Polymerase chain reaction Protein Binding Ribonucleic acid RNA Stem cells Time Factors |
title | Myogenic Factors That Regulate Expression of Muscle-Specific MicroRNAs |
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