The Human 64-kDa Polyadenylylation Factor Contains a Ribonucleoprotein-Type RNA Binding Domain and Unusual Auxiliary Motifs

Cleavage stimulation factor is one of the multiple factors required for 3'-end cleavage of mammalian pre-mRNAs. We have shown previously that this factor is composed of three subunits with estimated molecular masses of 77, 64, and 50 kDa and that the 64-kDa subunit can be UV-crosslinked to RNA...

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Veröffentlicht in:Proceedings of the National Academy of Sciences - PNAS 1992-02, Vol.89 (4), p.1403-1407
Hauptverfasser: Takagaki, Yoshio, MacDonald, Clinton C., Shenk, Thomas, Manley, James L.
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container_title Proceedings of the National Academy of Sciences - PNAS
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creator Takagaki, Yoshio
MacDonald, Clinton C.
Shenk, Thomas
Manley, James L.
description Cleavage stimulation factor is one of the multiple factors required for 3'-end cleavage of mammalian pre-mRNAs. We have shown previously that this factor is composed of three subunits with estimated molecular masses of 77, 64, and 50 kDa and that the 64-kDa subunit can be UV-crosslinked to RNA in a polyadenylylation signal (AAUAAA)-dependent manner. We have now isolated cDNAs encoding the 64-kDa subunit of human cleavage stimulation factor. The 64-kDa subunit contains a ribonucleoprotein-type RNA binding domain in the N-terminal region and a repeat structure in the C-terminal region in which a pentapeptide sequence (consensus MEARA/G) is repeated 12 times and the formation of a long α-helix stabilized by salt bridges is predicted. An ≈270-amino acid segment surrounding this repeat structure is highly enriched in proline and glycine residues (≈20% for each). When cloned 64-kDa subunit was expressed in Escherichia coli, an N-terminal fragment containing the RNA binding domain bound to RNAs in a polyadenylylation-signal-independent manner, suggesting that the RNA binding domain is directly involved in the binding of the 64-kDa subunit to pre-mRNAs.
doi_str_mv 10.1073/pnas.89.4.1403
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Psychology ; Gels ; genes ; GLYCINE ; HeLa Cells ; HETEROCYCLIC ACIDS ; HETEROCYCLIC COMPOUNDS ; Humans ; MAMMALS ; MAN ; Messenger RNA ; MICROORGANISMS ; Molecular and cellular biology ; Molecular genetics ; Molecular Sequence Data ; MOLECULAR STRUCTURE ; Molecular Weight ; mRNA Cleavage and Polyadenylation Factors ; NUCLEIC ACIDS ; NUCLEOPROTEINS ; ORGANIC ACIDS ; ORGANIC COMPOUNDS ; ORGANIC NITROGEN COMPOUNDS ; Poly A - metabolism ; POLYMERIZATION ; PRIMATES ; PROLINE ; PROTEINS ; PYRROLES ; PYRROLIDINES ; RADIATION EFFECTS ; RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTANT EFFECTS ON LIVING ORGS. AND BIOL. MAT ; RADIATIONS ; RECOMBINANT DNA ; Ribonucleic acid ; ribonucleoproteins ; Ribonucleoproteins - chemistry ; RNA ; RNA Processing, Post-Transcriptional ; RNA-Binding Proteins - chemistry ; Salts ; STRUCTURAL CHEMICAL ANALYSIS ; Transcription. Transcription factor. Splicing. 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We have shown previously that this factor is composed of three subunits with estimated molecular masses of 77, 64, and 50 kDa and that the 64-kDa subunit can be UV-crosslinked to RNA in a polyadenylylation signal (AAUAAA)-dependent manner. We have now isolated cDNAs encoding the 64-kDa subunit of human cleavage stimulation factor. The 64-kDa subunit contains a ribonucleoprotein-type RNA binding domain in the N-terminal region and a repeat structure in the C-terminal region in which a pentapeptide sequence (consensus MEARA/G) is repeated 12 times and the formation of a long α-helix stabilized by salt bridges is predicted. An ≈270-amino acid segment surrounding this repeat structure is highly enriched in proline and glycine residues (≈20% for each). 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Psychology</subject><subject>Gels</subject><subject>genes</subject><subject>GLYCINE</subject><subject>HeLa Cells</subject><subject>HETEROCYCLIC ACIDS</subject><subject>HETEROCYCLIC COMPOUNDS</subject><subject>Humans</subject><subject>MAMMALS</subject><subject>MAN</subject><subject>Messenger RNA</subject><subject>MICROORGANISMS</subject><subject>Molecular and cellular biology</subject><subject>Molecular genetics</subject><subject>Molecular Sequence Data</subject><subject>MOLECULAR STRUCTURE</subject><subject>Molecular Weight</subject><subject>mRNA Cleavage and Polyadenylation Factors</subject><subject>NUCLEIC ACIDS</subject><subject>NUCLEOPROTEINS</subject><subject>ORGANIC ACIDS</subject><subject>ORGANIC COMPOUNDS</subject><subject>ORGANIC NITROGEN COMPOUNDS</subject><subject>Poly A - metabolism</subject><subject>POLYMERIZATION</subject><subject>PRIMATES</subject><subject>PROLINE</subject><subject>PROTEINS</subject><subject>PYRROLES</subject><subject>PYRROLIDINES</subject><subject>RADIATION EFFECTS</subject><subject>RADIATION, THERMAL, AND OTHER ENVIRON. 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Psychology</topic><topic>Gels</topic><topic>genes</topic><topic>GLYCINE</topic><topic>HeLa Cells</topic><topic>HETEROCYCLIC ACIDS</topic><topic>HETEROCYCLIC COMPOUNDS</topic><topic>Humans</topic><topic>MAMMALS</topic><topic>MAN</topic><topic>Messenger RNA</topic><topic>MICROORGANISMS</topic><topic>Molecular and cellular biology</topic><topic>Molecular genetics</topic><topic>Molecular Sequence Data</topic><topic>MOLECULAR STRUCTURE</topic><topic>Molecular Weight</topic><topic>mRNA Cleavage and Polyadenylation Factors</topic><topic>NUCLEIC ACIDS</topic><topic>NUCLEOPROTEINS</topic><topic>ORGANIC ACIDS</topic><topic>ORGANIC COMPOUNDS</topic><topic>ORGANIC NITROGEN COMPOUNDS</topic><topic>Poly A - metabolism</topic><topic>POLYMERIZATION</topic><topic>PRIMATES</topic><topic>PROLINE</topic><topic>PROTEINS</topic><topic>PYRROLES</topic><topic>PYRROLIDINES</topic><topic>RADIATION EFFECTS</topic><topic>RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTANT EFFECTS ON LIVING ORGS. AND BIOL. 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Rna processing</topic><topic>ULTRAVIOLET RADIATION</topic><topic>VERTEBRATES</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Takagaki, Yoshio</creatorcontrib><creatorcontrib>MacDonald, Clinton C.</creatorcontrib><creatorcontrib>Shenk, Thomas</creatorcontrib><creatorcontrib>Manley, James L.</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium &amp; Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Human Genome Abstracts</collection><collection>Biochemistry Abstracts 3</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Takagaki, Yoshio</au><au>MacDonald, Clinton C.</au><au>Shenk, Thomas</au><au>Manley, James L.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The Human 64-kDa Polyadenylylation Factor Contains a Ribonucleoprotein-Type RNA Binding Domain and Unusual Auxiliary Motifs</atitle><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle><addtitle>Proc Natl Acad Sci U S A</addtitle><date>1992-02-15</date><risdate>1992</risdate><volume>89</volume><issue>4</issue><spage>1403</spage><epage>1407</epage><pages>1403-1407</pages><issn>0027-8424</issn><eissn>1091-6490</eissn><coden>PNASA6</coden><abstract>Cleavage stimulation factor is one of the multiple factors required for 3'-end cleavage of mammalian pre-mRNAs. We have shown previously that this factor is composed of three subunits with estimated molecular masses of 77, 64, and 50 kDa and that the 64-kDa subunit can be UV-crosslinked to RNA in a polyadenylylation signal (AAUAAA)-dependent manner. We have now isolated cDNAs encoding the 64-kDa subunit of human cleavage stimulation factor. The 64-kDa subunit contains a ribonucleoprotein-type RNA binding domain in the N-terminal region and a repeat structure in the C-terminal region in which a pentapeptide sequence (consensus MEARA/G) is repeated 12 times and the formation of a long α-helix stabilized by salt bridges is predicted. An ≈270-amino acid segment surrounding this repeat structure is highly enriched in proline and glycine residues (≈20% for each). When cloned 64-kDa subunit was expressed in Escherichia coli, an N-terminal fragment containing the RNA binding domain bound to RNAs in a polyadenylylation-signal-independent manner, suggesting that the RNA binding domain is directly involved in the binding of the 64-kDa subunit to pre-mRNAs.</abstract><cop>Washington, DC</cop><pub>National Academy of Sciences of the United States of America</pub><pmid>1741396</pmid><doi>10.1073/pnas.89.4.1403</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record>
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subjects 560120 - Radiation Effects on Biochemicals, Cells, & Tissue Culture
AMINES
AMINO ACID SEQUENCE
AMINO ACIDS
ANIMALS
AZOLES
BACTERIA
Base Sequence
Binding Sites
Biochemistry
Biological and medical sciences
BIOLOGICAL EFFECTS
BIOLOGICAL RADIATION EFFECTS
Bridge engineering
CARBOXYLIC ACIDS
CHEMICAL REACTIONS
Cloning, Molecular
CODONS
Complementary DNA
CROSS-LINKING
Deoxyribonucleic acid
DNA
DNA - genetics
DNA SEQUENCING
ELECTROMAGNETIC RADIATION
ESCHERICHIA COLI
Fundamental and applied biological sciences. Psychology
Gels
genes
GLYCINE
HeLa Cells
HETEROCYCLIC ACIDS
HETEROCYCLIC COMPOUNDS
Humans
MAMMALS
MAN
Messenger RNA
MICROORGANISMS
Molecular and cellular biology
Molecular genetics
Molecular Sequence Data
MOLECULAR STRUCTURE
Molecular Weight
mRNA Cleavage and Polyadenylation Factors
NUCLEIC ACIDS
NUCLEOPROTEINS
ORGANIC ACIDS
ORGANIC COMPOUNDS
ORGANIC NITROGEN COMPOUNDS
Poly A - metabolism
POLYMERIZATION
PRIMATES
PROLINE
PROTEINS
PYRROLES
PYRROLIDINES
RADIATION EFFECTS
RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTANT EFFECTS ON LIVING ORGS. AND BIOL. MAT
RADIATIONS
RECOMBINANT DNA
Ribonucleic acid
ribonucleoproteins
Ribonucleoproteins - chemistry
RNA
RNA Processing, Post-Transcriptional
RNA-Binding Proteins - chemistry
Salts
STRUCTURAL CHEMICAL ANALYSIS
Transcription. Transcription factor. Splicing. Rna processing
ULTRAVIOLET RADIATION
VERTEBRATES
title The Human 64-kDa Polyadenylylation Factor Contains a Ribonucleoprotein-Type RNA Binding Domain and Unusual Auxiliary Motifs
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