systematic position of Phaeocryptopus gaeumannii
Phaeocryptopus gaeumannii, causal agent of the Douglas-fir foliar disease Swiss needle cast, is the only known pathogenic species of the genus. Current classifications place Phaeocryptopus in the Venturiaceae (Pleosporales), typified by the apple-scab pathogen Venturia inaequalis. All core members o...
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description | Phaeocryptopus gaeumannii, causal agent of the Douglas-fir foliar disease Swiss needle cast, is the only known pathogenic species of the genus. Current classifications place Phaeocryptopus in the Venturiaceae (Pleosporales), typified by the apple-scab pathogen Venturia inaequalis. All core members of this family have hyphomycetous anamorphs. We sought to confirm these relationships by means of phylogenetic analyses of the small (SSU) and large (LSU) subunits and internal transcribed spacer (ITS) region of nuclear ribosomal gene sequences (nrDNA). Analyses indicated that both the genus Phaeocryptopus and the family Venturiaceae, as currently defined, are unnatural groups. Phaeocryptopus nudus, type of the genus, is aligned in the Dothioraceae (Dothideales) and P. gaeumannii in the Mycosphaerellaceae (Capnodiales) near species of Mycosphaerella and Rasutoria. Core representatives of Venturiaceae formed an unambiguous clade but ordinal placement was unresolved. The family apparently is not included in the Pleosporales, Dothideales, Myriangiales or Capnodiales. Coelomycetous Rhizosphaera form-species are accepted generally as anamorphic states of Phaeocryptopus, however the relationship never has been established conclusively. Species of Rhizosphaera are closely related to P. nudus but not to P. gaeumannii, supporting an anamorphteleomorph connection between Rhizosphaera and Phaeocryptopus and providing further evidence that P. gaeumanii is not congeneric with P. nudus. |
doi_str_mv | 10.1080/15572536.2007.11832584 |
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Current classifications place Phaeocryptopus in the Venturiaceae (Pleosporales), typified by the apple-scab pathogen Venturia inaequalis. All core members of this family have hyphomycetous anamorphs. We sought to confirm these relationships by means of phylogenetic analyses of the small (SSU) and large (LSU) subunits and internal transcribed spacer (ITS) region of nuclear ribosomal gene sequences (nrDNA). Analyses indicated that both the genus Phaeocryptopus and the family Venturiaceae, as currently defined, are unnatural groups. Phaeocryptopus nudus, type of the genus, is aligned in the Dothioraceae (Dothideales) and P. gaeumannii in the Mycosphaerellaceae (Capnodiales) near species of Mycosphaerella and Rasutoria. Core representatives of Venturiaceae formed an unambiguous clade but ordinal placement was unresolved. The family apparently is not included in the Pleosporales, Dothideales, Myriangiales or Capnodiales. Coelomycetous Rhizosphaera form-species are accepted generally as anamorphic states of Phaeocryptopus, however the relationship never has been established conclusively. Species of Rhizosphaera are closely related to P. nudus but not to P. gaeumannii, supporting an anamorphteleomorph connection between Rhizosphaera and Phaeocryptopus and providing further evidence that P. gaeumanii is not congeneric with P. nudus.</description><identifier>ISSN: 0027-5514</identifier><identifier>EISSN: 1557-2536</identifier><identifier>DOI: 10.1080/15572536.2007.11832584</identifier><identifier>PMID: 17682777</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Anamorphs ; Ascomycota ; Ascomycota - classification ; Ascomycota - genetics ; Biological taxonomies ; Capnodiales ; DNA, Fungal - chemistry ; DNA, Fungal - genetics ; DNA, Intergenic - chemistry ; DNA, Intergenic - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Dothideales ; Dothorioraceae ; Fungi ; Genera ; internal transcribed spacers ; Loculoascomycetes ; Molecular Evolution and Systematics ; Molecular Sequence Data ; molecular systematics ; Mycosphaerellaceae ; nrDNA ; Parsimony ; Phaeocryptopus ; Phaeocryptopus gaeumannii ; Phaeocryptopus nudus ; Phylogenetics ; Phylogeny ; plant pathogenic fungi ; Pseudotsuga - microbiology ; Ribosomal DNA ; RNA, Ribosomal, 18S - genetics ; RNA, Ribosomal, 28S - genetics ; sequence analysis ; Sequence Analysis, DNA ; Swiss needle cast ; Taxa ; Venturiaceae</subject><ispartof>Mycologia, 2007-03, Vol.99 (2), p.240-252</ispartof><rights>2007 by The Mycological Society of America 2007</rights><rights>Copyright 2007 The Mycological Society of America</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2587-a6a23862e13a517eedcb95a6f06cab66397a59c44b9cee28dbded69fbc41f5163</citedby><cites>FETCH-LOGICAL-c2587-a6a23862e13a517eedcb95a6f06cab66397a59c44b9cee28dbded69fbc41f5163</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/20444830$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/20444830$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,776,780,799,27903,27904,57996,58229</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17682777$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Winton, L.M</creatorcontrib><creatorcontrib>Stone, J.K</creatorcontrib><creatorcontrib>Hansen, E.M</creatorcontrib><creatorcontrib>Shoemaker, R.A</creatorcontrib><title>systematic position of Phaeocryptopus gaeumannii</title><title>Mycologia</title><addtitle>Mycologia</addtitle><description>Phaeocryptopus gaeumannii, causal agent of the Douglas-fir foliar disease Swiss needle cast, is the only known pathogenic species of the genus. Current classifications place Phaeocryptopus in the Venturiaceae (Pleosporales), typified by the apple-scab pathogen Venturia inaequalis. All core members of this family have hyphomycetous anamorphs. We sought to confirm these relationships by means of phylogenetic analyses of the small (SSU) and large (LSU) subunits and internal transcribed spacer (ITS) region of nuclear ribosomal gene sequences (nrDNA). Analyses indicated that both the genus Phaeocryptopus and the family Venturiaceae, as currently defined, are unnatural groups. Phaeocryptopus nudus, type of the genus, is aligned in the Dothioraceae (Dothideales) and P. gaeumannii in the Mycosphaerellaceae (Capnodiales) near species of Mycosphaerella and Rasutoria. Core representatives of Venturiaceae formed an unambiguous clade but ordinal placement was unresolved. The family apparently is not included in the Pleosporales, Dothideales, Myriangiales or Capnodiales. Coelomycetous Rhizosphaera form-species are accepted generally as anamorphic states of Phaeocryptopus, however the relationship never has been established conclusively. Species of Rhizosphaera are closely related to P. nudus but not to P. gaeumannii, supporting an anamorphteleomorph connection between Rhizosphaera and Phaeocryptopus and providing further evidence that P. gaeumanii is not congeneric with P. nudus.</description><subject>Anamorphs</subject><subject>Ascomycota</subject><subject>Ascomycota - classification</subject><subject>Ascomycota - genetics</subject><subject>Biological taxonomies</subject><subject>Capnodiales</subject><subject>DNA, Fungal - chemistry</subject><subject>DNA, Fungal - genetics</subject><subject>DNA, Intergenic - chemistry</subject><subject>DNA, Intergenic - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Dothideales</subject><subject>Dothorioraceae</subject><subject>Fungi</subject><subject>Genera</subject><subject>internal transcribed spacers</subject><subject>Loculoascomycetes</subject><subject>Molecular Evolution and Systematics</subject><subject>Molecular Sequence Data</subject><subject>molecular systematics</subject><subject>Mycosphaerellaceae</subject><subject>nrDNA</subject><subject>Parsimony</subject><subject>Phaeocryptopus</subject><subject>Phaeocryptopus gaeumannii</subject><subject>Phaeocryptopus nudus</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>plant pathogenic fungi</subject><subject>Pseudotsuga - microbiology</subject><subject>Ribosomal DNA</subject><subject>RNA, Ribosomal, 18S - genetics</subject><subject>RNA, Ribosomal, 28S - genetics</subject><subject>sequence analysis</subject><subject>Sequence Analysis, DNA</subject><subject>Swiss needle cast</subject><subject>Taxa</subject><subject>Venturiaceae</subject><issn>0027-5514</issn><issn>1557-2536</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkM1q3DAUhUVJaaZpHyHJrLrzVFe_9jKE9AcCLbRZi2tZShVsy5Fsyrx9NXgmWXYlxHfO1dVHyBXQHdCafgYpNZNc7RilegdQcyZr8YZsDqA6kDOyoZTpSkoQ5-R9zk_lWih9R85Bq5pprTeE5n2e3YBzsNsp5jCHOG6j3_78gy7atJ_mOC15-4huGXAcQ_hA3nrss_t4PC_Iw5e737ffqvsfX7_f3txXtiyiK1TIeK2YA44StHOdbRuJylNlsVWKNxplY4VoG-scq7u2c51qfGsFeAmKX5BP69wpxefF5dkMIVvX9zi6uGSjahAArClBtQZtijkn582UwoBpb4CagytzcmUOrszJVSleHV9Y2sF1r7WjnBK4XANPeY7phTMqhKg5Lfxm5WH0MQ34N6a-MzPu-5h8wtGGbPh_l7heZ3iMBh9TqTz8YhQ4LSWQ5X__AM-Wi9Q</recordid><startdate>200703</startdate><enddate>200703</enddate><creator>Winton, L.M</creator><creator>Stone, J.K</creator><creator>Hansen, E.M</creator><creator>Shoemaker, R.A</creator><general>Taylor & Francis</general><general>Mycologia Society of America</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>200703</creationdate><title>systematic position of Phaeocryptopus gaeumannii</title><author>Winton, L.M ; Stone, J.K ; Hansen, E.M ; Shoemaker, R.A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2587-a6a23862e13a517eedcb95a6f06cab66397a59c44b9cee28dbded69fbc41f5163</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Anamorphs</topic><topic>Ascomycota</topic><topic>Ascomycota - classification</topic><topic>Ascomycota - genetics</topic><topic>Biological taxonomies</topic><topic>Capnodiales</topic><topic>DNA, Fungal - chemistry</topic><topic>DNA, Fungal - genetics</topic><topic>DNA, Intergenic - chemistry</topic><topic>DNA, Intergenic - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>Dothideales</topic><topic>Dothorioraceae</topic><topic>Fungi</topic><topic>Genera</topic><topic>internal transcribed spacers</topic><topic>Loculoascomycetes</topic><topic>Molecular Evolution and Systematics</topic><topic>Molecular Sequence Data</topic><topic>molecular systematics</topic><topic>Mycosphaerellaceae</topic><topic>nrDNA</topic><topic>Parsimony</topic><topic>Phaeocryptopus</topic><topic>Phaeocryptopus gaeumannii</topic><topic>Phaeocryptopus nudus</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>plant pathogenic fungi</topic><topic>Pseudotsuga - microbiology</topic><topic>Ribosomal DNA</topic><topic>RNA, Ribosomal, 18S - genetics</topic><topic>RNA, Ribosomal, 28S - genetics</topic><topic>sequence analysis</topic><topic>Sequence Analysis, DNA</topic><topic>Swiss needle cast</topic><topic>Taxa</topic><topic>Venturiaceae</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Winton, L.M</creatorcontrib><creatorcontrib>Stone, J.K</creatorcontrib><creatorcontrib>Hansen, E.M</creatorcontrib><creatorcontrib>Shoemaker, R.A</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Mycologia</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Winton, L.M</au><au>Stone, J.K</au><au>Hansen, E.M</au><au>Shoemaker, R.A</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>systematic position of Phaeocryptopus gaeumannii</atitle><jtitle>Mycologia</jtitle><addtitle>Mycologia</addtitle><date>2007-03</date><risdate>2007</risdate><volume>99</volume><issue>2</issue><spage>240</spage><epage>252</epage><pages>240-252</pages><issn>0027-5514</issn><eissn>1557-2536</eissn><abstract>Phaeocryptopus gaeumannii, causal agent of the Douglas-fir foliar disease Swiss needle cast, is the only known pathogenic species of the genus. Current classifications place Phaeocryptopus in the Venturiaceae (Pleosporales), typified by the apple-scab pathogen Venturia inaequalis. All core members of this family have hyphomycetous anamorphs. We sought to confirm these relationships by means of phylogenetic analyses of the small (SSU) and large (LSU) subunits and internal transcribed spacer (ITS) region of nuclear ribosomal gene sequences (nrDNA). Analyses indicated that both the genus Phaeocryptopus and the family Venturiaceae, as currently defined, are unnatural groups. Phaeocryptopus nudus, type of the genus, is aligned in the Dothioraceae (Dothideales) and P. gaeumannii in the Mycosphaerellaceae (Capnodiales) near species of Mycosphaerella and Rasutoria. Core representatives of Venturiaceae formed an unambiguous clade but ordinal placement was unresolved. The family apparently is not included in the Pleosporales, Dothideales, Myriangiales or Capnodiales. Coelomycetous Rhizosphaera form-species are accepted generally as anamorphic states of Phaeocryptopus, however the relationship never has been established conclusively. Species of Rhizosphaera are closely related to P. nudus but not to P. gaeumannii, supporting an anamorphteleomorph connection between Rhizosphaera and Phaeocryptopus and providing further evidence that P. gaeumanii is not congeneric with P. nudus.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>17682777</pmid><doi>10.1080/15572536.2007.11832584</doi><tpages>13</tpages></addata></record> |
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subjects | Anamorphs Ascomycota Ascomycota - classification Ascomycota - genetics Biological taxonomies Capnodiales DNA, Fungal - chemistry DNA, Fungal - genetics DNA, Intergenic - chemistry DNA, Intergenic - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Dothideales Dothorioraceae Fungi Genera internal transcribed spacers Loculoascomycetes Molecular Evolution and Systematics Molecular Sequence Data molecular systematics Mycosphaerellaceae nrDNA Parsimony Phaeocryptopus Phaeocryptopus gaeumannii Phaeocryptopus nudus Phylogenetics Phylogeny plant pathogenic fungi Pseudotsuga - microbiology Ribosomal DNA RNA, Ribosomal, 18S - genetics RNA, Ribosomal, 28S - genetics sequence analysis Sequence Analysis, DNA Swiss needle cast Taxa Venturiaceae |
title | systematic position of Phaeocryptopus gaeumannii |
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