Underwound DNA under tension: L-DNA vs. plectoneme
In many biological processes DNA experiences force in the pN range and torque that underwinds it. Magnetic tweezers experiments show that the superhelicity -extension curve, the so-called bell curve, is asymmetric with respect to the inversion of σ. We study the case of underwound DNA which was not...
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Veröffentlicht in: | Europhysics letters 2014-02, Vol.105 (4), p.48002-p1-48002-p6 |
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creator | Son, Anmin Kwon, Ah-Young Johner, Albert Hong, Seok-Cheol Lee, Nam-Kyung |
description | In many biological processes DNA experiences force in the pN range and torque that underwinds it. Magnetic tweezers experiments show that the superhelicity -extension curve, the so-called bell curve, is asymmetric with respect to the inversion of σ. We study the case of underwound DNA which was not addressed theoretically before. While the case of overwound DNA is fully explained by the formation of supercoil, the extension of underwound DNA reveals non-trivial tension dependence. We show that plectonemic coils form at moderate tension, whereas left-handed DNA, so-called "L-DNA", prevails at high tension (above ). In a narrow but physiologically relevant crossover range of tension, that is between 0.4 pN and 0.7 pN, extra unwinding turns are statistically distributed to either plectoneme or L-DNA. In this regime the states of a torsionally stressed DNA should be most sensitive to external mechanical stimuli. |
doi_str_mv | 10.1209/0295-5075/105/48002 |
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Magnetic tweezers experiments show that the superhelicity -extension curve, the so-called bell curve, is asymmetric with respect to the inversion of σ. We study the case of underwound DNA which was not addressed theoretically before. While the case of overwound DNA is fully explained by the formation of supercoil, the extension of underwound DNA reveals non-trivial tension dependence. We show that plectonemic coils form at moderate tension, whereas left-handed DNA, so-called "L-DNA", prevails at high tension (above ). In a narrow but physiologically relevant crossover range of tension, that is between 0.4 pN and 0.7 pN, extra unwinding turns are statistically distributed to either plectoneme or L-DNA. In this regime the states of a torsionally stressed DNA should be most sensitive to external mechanical stimuli.</description><subject>82.37.Rs</subject><subject>87.14.gk</subject><subject>Approximation</subject><subject>Asymmetry</subject><subject>Biological activity</subject><subject>Coils</subject><subject>Crossovers</subject><subject>Deoxyribonucleic acid</subject><subject>Formations</subject><subject>Inversions</subject><subject>Stimuli</subject><issn>0295-5075</issn><issn>1286-4854</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><recordid>eNqN0EtLxDAQB_AgCq6PT-Cl4EEv3c0kk7TxJr5h8QEuipfQRwKr3bY2rY9vb2plBRHxFDL8_pnJELIDdAyMqgllSoSCRmICVEwwppStkBGwWIYYC1wlo6VYJxvOPVIKEIMcETYrc9O8Vl2ZB8eXh0HXX4PWlG5elQfBNOyLL24c1IXJ2qo0C7NF1mxSOLP9dW6S2enJ7dF5OL06uzg6nIYZCt6GCpFnqY0VWpYySbM8h8iihEjSBEyK0ipuowTzNEWRMZsrP7ySClVkGWR8k-wP79ZN9dwZ1-rF3GWmKJLSVJ3TIAUgShT4D4rMN0YpPd39QR-rrin9RzQHoMBBRswrPqisqZxrjNV1M18kzbsGqvuV636hul-orwj9uXKfCofU3LXmbRlJmictI-5pTO_0jZqqa_Wg9L33ky9f1d9j_N1h75eEqYvBDErXueUfwZyZtA</recordid><startdate>20140201</startdate><enddate>20140201</enddate><creator>Son, Anmin</creator><creator>Kwon, Ah-Young</creator><creator>Johner, Albert</creator><creator>Hong, Seok-Cheol</creator><creator>Lee, Nam-Kyung</creator><general>EDP Sciences, IOP Publishing and Società Italiana di Fisica</general><general>IOP Publishing</general><scope>BSCLL</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7U5</scope><scope>8FD</scope><scope>H8D</scope><scope>L7M</scope><scope>7TM</scope></search><sort><creationdate>20140201</creationdate><title>Underwound DNA under tension: L-DNA vs. plectoneme</title><author>Son, Anmin ; Kwon, Ah-Young ; Johner, Albert ; Hong, Seok-Cheol ; Lee, Nam-Kyung</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c453t-9443cbf894f2b260cdd17f461760a1eb46f93f7a4dbb45c2fd9105969497f21c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>82.37.Rs</topic><topic>87.14.gk</topic><topic>Approximation</topic><topic>Asymmetry</topic><topic>Biological activity</topic><topic>Coils</topic><topic>Crossovers</topic><topic>Deoxyribonucleic acid</topic><topic>Formations</topic><topic>Inversions</topic><topic>Stimuli</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Son, Anmin</creatorcontrib><creatorcontrib>Kwon, Ah-Young</creatorcontrib><creatorcontrib>Johner, Albert</creatorcontrib><creatorcontrib>Hong, Seok-Cheol</creatorcontrib><creatorcontrib>Lee, Nam-Kyung</creatorcontrib><collection>Istex</collection><collection>CrossRef</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Technology Research Database</collection><collection>Aerospace Database</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Nucleic Acids Abstracts</collection><jtitle>Europhysics letters</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Son, Anmin</au><au>Kwon, Ah-Young</au><au>Johner, Albert</au><au>Hong, Seok-Cheol</au><au>Lee, Nam-Kyung</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Underwound DNA under tension: L-DNA vs. plectoneme</atitle><jtitle>Europhysics letters</jtitle><stitle>EPL</stitle><addtitle>EPL</addtitle><date>2014-02-01</date><risdate>2014</risdate><volume>105</volume><issue>4</issue><spage>48002</spage><epage>p1-48002-p6</epage><pages>48002-p1-48002-p6</pages><issn>0295-5075</issn><eissn>1286-4854</eissn><coden>EULEEJ</coden><abstract>In many biological processes DNA experiences force in the pN range and torque that underwinds it. 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subjects | 82.37.Rs 87.14.gk Approximation Asymmetry Biological activity Coils Crossovers Deoxyribonucleic acid Formations Inversions Stimuli |
title | Underwound DNA under tension: L-DNA vs. plectoneme |
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