Underwound DNA under tension: L-DNA vs. plectoneme

In many biological processes DNA experiences force in the pN range and torque that underwinds it. Magnetic tweezers experiments show that the superhelicity -extension curve, the so-called bell curve, is asymmetric with respect to the inversion of σ. We study the case of underwound DNA which was not...

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Veröffentlicht in:Europhysics letters 2014-02, Vol.105 (4), p.48002-p1-48002-p6
Hauptverfasser: Son, Anmin, Kwon, Ah-Young, Johner, Albert, Hong, Seok-Cheol, Lee, Nam-Kyung
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container_issue 4
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container_title Europhysics letters
container_volume 105
creator Son, Anmin
Kwon, Ah-Young
Johner, Albert
Hong, Seok-Cheol
Lee, Nam-Kyung
description In many biological processes DNA experiences force in the pN range and torque that underwinds it. Magnetic tweezers experiments show that the superhelicity -extension curve, the so-called bell curve, is asymmetric with respect to the inversion of σ. We study the case of underwound DNA which was not addressed theoretically before. While the case of overwound DNA is fully explained by the formation of supercoil, the extension of underwound DNA reveals non-trivial tension dependence. We show that plectonemic coils form at moderate tension, whereas left-handed DNA, so-called "L-DNA", prevails at high tension (above ). In a narrow but physiologically relevant crossover range of tension, that is between 0.4 pN and 0.7 pN, extra unwinding turns are statistically distributed to either plectoneme or L-DNA. In this regime the states of a torsionally stressed DNA should be most sensitive to external mechanical stimuli.
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subjects 82.37.Rs
87.14.gk
Approximation
Asymmetry
Biological activity
Coils
Crossovers
Deoxyribonucleic acid
Formations
Inversions
Stimuli
title Underwound DNA under tension: L-DNA vs. plectoneme
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