Prognosis of stage I lung cancer patients through quantitative analysis of centrosomal features
Centrosome amplification leads to the loss of regulated chromosome segregation, aneuploidy, and chromosome instability and has the possibility to be a biomarker of cancer prognosis. To explore this feasibility, resected, stage I non-small cell lung cancer (NSCLC) tissues from six survivor and six fa...
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creator | Dansheng Song Zhukov, T. A. Markov, O. Wei Qian Tockman, M. S. |
description | Centrosome amplification leads to the loss of regulated chromosome segregation, aneuploidy, and chromosome instability and has the possibility to be a biomarker of cancer prognosis. To explore this feasibility, resected, stage I non-small cell lung cancer (NSCLC) tissues from six survivor and six fatal cases were immunostained and scanned. Regions of interest were selected to include one cell and its centrosomes. After segmentation, feature abstraction, and optimization, six nonredundant features were used for statistical analysis and classification. Two analytic methods showed that for each feature, centrosomes from survivors differed from centrosomes of fatalities, indicating sampling from different populations. The data were classified using linear discriminant analysis (LDA) and support vector machines (SVM) with 10-fold cross-validation. Classification accuracy was 74% by LDA and 79% by SVM, respectively, and further improved to 85% with bagging. Centrosome can be a biomarker for stage I NSCLC prognosis and has potential for clinical utility. |
doi_str_mv | 10.1109/ISBI.2012.6235883 |
format | Conference Proceeding |
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A. ; Markov, O. ; Wei Qian ; Tockman, M. S.</creator><creatorcontrib>Dansheng Song ; Zhukov, T. A. ; Markov, O. ; Wei Qian ; Tockman, M. S.</creatorcontrib><description>Centrosome amplification leads to the loss of regulated chromosome segregation, aneuploidy, and chromosome instability and has the possibility to be a biomarker of cancer prognosis. To explore this feasibility, resected, stage I non-small cell lung cancer (NSCLC) tissues from six survivor and six fatal cases were immunostained and scanned. Regions of interest were selected to include one cell and its centrosomes. After segmentation, feature abstraction, and optimization, six nonredundant features were used for statistical analysis and classification. Two analytic methods showed that for each feature, centrosomes from survivors differed from centrosomes of fatalities, indicating sampling from different populations. The data were classified using linear discriminant analysis (LDA) and support vector machines (SVM) with 10-fold cross-validation. Classification accuracy was 74% by LDA and 79% by SVM, respectively, and further improved to 85% with bagging. 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A.</creatorcontrib><creatorcontrib>Markov, O.</creatorcontrib><creatorcontrib>Wei Qian</creatorcontrib><creatorcontrib>Tockman, M. S.</creatorcontrib><title>Prognosis of stage I lung cancer patients through quantitative analysis of centrosomal features</title><title>2012 9th IEEE International Symposium on Biomedical Imaging (ISBI)</title><addtitle>ISBI</addtitle><description>Centrosome amplification leads to the loss of regulated chromosome segregation, aneuploidy, and chromosome instability and has the possibility to be a biomarker of cancer prognosis. To explore this feasibility, resected, stage I non-small cell lung cancer (NSCLC) tissues from six survivor and six fatal cases were immunostained and scanned. Regions of interest were selected to include one cell and its centrosomes. After segmentation, feature abstraction, and optimization, six nonredundant features were used for statistical analysis and classification. Two analytic methods showed that for each feature, centrosomes from survivors differed from centrosomes of fatalities, indicating sampling from different populations. The data were classified using linear discriminant analysis (LDA) and support vector machines (SVM) with 10-fold cross-validation. Classification accuracy was 74% by LDA and 79% by SVM, respectively, and further improved to 85% with bagging. Centrosome can be a biomarker for stage I NSCLC prognosis and has potential for clinical utility.</description><subject>Accuracy</subject><subject>Biomarker</subject><subject>Cancer</subject><subject>Centrosome</subject><subject>Error analysis</subject><subject>Features</subject><subject>Linear discriminant analysis</subject><subject>Lung cancer</subject><subject>Lungs</subject><subject>Prognosis</subject><subject>Statistical analysis</subject><subject>Support vector machines</subject><issn>1945-7928</issn><issn>1945-8452</issn><isbn>145771857X</isbn><isbn>9781457718571</isbn><isbn>9781457718588</isbn><isbn>9781457718564</isbn><isbn>1457718588</isbn><isbn>1457718561</isbn><fulltext>true</fulltext><rsrctype>conference_proceeding</rsrctype><creationdate>2012</creationdate><recordtype>conference_proceeding</recordtype><sourceid>6IE</sourceid><sourceid>RIE</sourceid><recordid>eNo1kN1Kw0AQhdc_sNY8gHizL5C6v9ndSy1VAwUFFbwrk2aSRtKk7m6Evr0B47mZw_lm5uIQcsPZgnPm7vK3h3whGBeLTEhtrTwhiTOWK20Mt2NwSmbcKZ1apcUZufoH5vN8AsYJe0mSEL7YKKOUZGpGNq--r7s-NIH2FQ0RaqQ5bYeuplvotujpAWKDXQw07nw_1Dv6PUAXmzjGP0ihg_Y4XW_HNd-Hfg8trRDi4DFck4sK2oDJNOfk43H1vnxO1y9P-fJ-nTbc6JgCKw0ok5XGaDf6zLoKJboCreDIJSssqALBSaec1rxCJ0UpNAhesIpnck5u__42iLg5-GYP_riZupK_lY5adA</recordid><startdate>201205</startdate><enddate>201205</enddate><creator>Dansheng Song</creator><creator>Zhukov, T. A.</creator><creator>Markov, O.</creator><creator>Wei Qian</creator><creator>Tockman, M. S.</creator><general>IEEE</general><scope>6IE</scope><scope>6IL</scope><scope>CBEJK</scope><scope>RIE</scope><scope>RIL</scope></search><sort><creationdate>201205</creationdate><title>Prognosis of stage I lung cancer patients through quantitative analysis of centrosomal features</title><author>Dansheng Song ; Zhukov, T. A. ; Markov, O. ; Wei Qian ; Tockman, M. S.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-i175t-a0d7a476d77590d7689fe3e9be821e130b8a4bea93949551fe932d25a21b0f163</frbrgroupid><rsrctype>conference_proceedings</rsrctype><prefilter>conference_proceedings</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Accuracy</topic><topic>Biomarker</topic><topic>Cancer</topic><topic>Centrosome</topic><topic>Error analysis</topic><topic>Features</topic><topic>Linear discriminant analysis</topic><topic>Lung cancer</topic><topic>Lungs</topic><topic>Prognosis</topic><topic>Statistical analysis</topic><topic>Support vector machines</topic><toplevel>online_resources</toplevel><creatorcontrib>Dansheng Song</creatorcontrib><creatorcontrib>Zhukov, T. A.</creatorcontrib><creatorcontrib>Markov, O.</creatorcontrib><creatorcontrib>Wei Qian</creatorcontrib><creatorcontrib>Tockman, M. S.</creatorcontrib><collection>IEEE Electronic Library (IEL) Conference Proceedings</collection><collection>IEEE Proceedings Order Plan All Online (POP All Online) 1998-present by volume</collection><collection>IEEE Xplore All Conference Proceedings</collection><collection>IEEE Electronic Library (IEL)</collection><collection>IEEE Proceedings Order Plans (POP All) 1998-Present</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Dansheng Song</au><au>Zhukov, T. A.</au><au>Markov, O.</au><au>Wei Qian</au><au>Tockman, M. S.</au><format>book</format><genre>proceeding</genre><ristype>CONF</ristype><atitle>Prognosis of stage I lung cancer patients through quantitative analysis of centrosomal features</atitle><btitle>2012 9th IEEE International Symposium on Biomedical Imaging (ISBI)</btitle><stitle>ISBI</stitle><date>2012-05</date><risdate>2012</risdate><spage>1607</spage><epage>1610</epage><pages>1607-1610</pages><issn>1945-7928</issn><eissn>1945-8452</eissn><isbn>145771857X</isbn><isbn>9781457718571</isbn><eisbn>9781457718588</eisbn><eisbn>9781457718564</eisbn><eisbn>1457718588</eisbn><eisbn>1457718561</eisbn><abstract>Centrosome amplification leads to the loss of regulated chromosome segregation, aneuploidy, and chromosome instability and has the possibility to be a biomarker of cancer prognosis. To explore this feasibility, resected, stage I non-small cell lung cancer (NSCLC) tissues from six survivor and six fatal cases were immunostained and scanned. Regions of interest were selected to include one cell and its centrosomes. After segmentation, feature abstraction, and optimization, six nonredundant features were used for statistical analysis and classification. Two analytic methods showed that for each feature, centrosomes from survivors differed from centrosomes of fatalities, indicating sampling from different populations. The data were classified using linear discriminant analysis (LDA) and support vector machines (SVM) with 10-fold cross-validation. Classification accuracy was 74% by LDA and 79% by SVM, respectively, and further improved to 85% with bagging. Centrosome can be a biomarker for stage I NSCLC prognosis and has potential for clinical utility.</abstract><pub>IEEE</pub><doi>10.1109/ISBI.2012.6235883</doi><tpages>4</tpages></addata></record> |
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ispartof | 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI), 2012, p.1607-1610 |
issn | 1945-7928 1945-8452 |
language | eng |
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source | IEEE Electronic Library (IEL) Conference Proceedings |
subjects | Accuracy Biomarker Cancer Centrosome Error analysis Features Linear discriminant analysis Lung cancer Lungs Prognosis Statistical analysis Support vector machines |
title | Prognosis of stage I lung cancer patients through quantitative analysis of centrosomal features |
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