Characterization of an Inducible Phenylserine Aldolase from Pseudomonas putida 24-1
An inducible phenylserine aldolase (L-threo-3-phenylserine benzaldehyde-lyase, EC 4.1.2.26), which catalyzes the cleavage of L-3-phenylserine to yield benzaldehyde and glycine, was purified to homogeneity from a crude extract of Pseudomonas putida 24-1 isolated from soil. The enzyme was a hexamer wi...
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description | An inducible phenylserine aldolase (L-threo-3-phenylserine benzaldehyde-lyase, EC 4.1.2.26), which catalyzes the cleavage of L-3-phenylserine to yield benzaldehyde and glycine, was purified to homogeneity from a crude extract of Pseudomonas putida 24-1 isolated from soil. The enzyme was a hexamer with the apparent subunit molecular mass of 38 kDa and contained 0.7 mol of pyridoxal 5' phosphate per mol of the subunit. The enzyme exhibited absorption maxima at 280 and 420 nm. The maximal activity was obtained at about pH 8.5. The enzyme acted on L-threo-3-phenylserine (K[subscript m], 1.3 mM), L-erythro-3-phenylserine (K[subscript m], 4.6 mM), L-threonine (K[subscript m], 29 mM), and L-allo-threonine (K[subscript m], 22 mM). In the reverse reaction, threo- and erythro- forms of L-3-phenylserine were produced from benzaldehyde and glycine. The optimum pH for the reverse reaction was 7.5. The structural gene coding for the phenylserine aldolase from Pseudomonas putida 24-1 was cloned and overexpressed in Escherichia coli cells. The nucleotide sequence of the phenylserine aldolase gene encoded a peptide containing 357 amino acids with a calculated molecular mass of 37.4 kDa. The recombinant enzyme was purified and characterized. Site-directed mutagenesis experiments showed that replacement of K213 with Q resulted in a loss of the enzyme activity, with a disappearance of the absorption maximum at 420 nm. Thus, K213 of the enzyme probably functions as an essential catalytic residue, forming a Schiff base with pyridoxal 5'-phosphate. |
doi_str_mv | 10.1128/AEM.71.8.4602-4609.2005 |
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The enzyme was a hexamer with the apparent subunit molecular mass of 38 kDa and contained 0.7 mol of pyridoxal 5' phosphate per mol of the subunit. The enzyme exhibited absorption maxima at 280 and 420 nm. The maximal activity was obtained at about pH 8.5. The enzyme acted on L-threo-3-phenylserine (K[subscript m], 1.3 mM), L-erythro-3-phenylserine (K[subscript m], 4.6 mM), L-threonine (K[subscript m], 29 mM), and L-allo-threonine (K[subscript m], 22 mM). In the reverse reaction, threo- and erythro- forms of L-3-phenylserine were produced from benzaldehyde and glycine. The optimum pH for the reverse reaction was 7.5. The structural gene coding for the phenylserine aldolase from Pseudomonas putida 24-1 was cloned and overexpressed in Escherichia coli cells. The nucleotide sequence of the phenylserine aldolase gene encoded a peptide containing 357 amino acids with a calculated molecular mass of 37.4 kDa. The recombinant enzyme was purified and characterized. Site-directed mutagenesis experiments showed that replacement of K213 with Q resulted in a loss of the enzyme activity, with a disappearance of the absorption maximum at 420 nm. Thus, K213 of the enzyme probably functions as an essential catalytic residue, forming a Schiff base with pyridoxal 5'-phosphate.</description><identifier>ISSN: 0099-2240</identifier><identifier>EISSN: 1098-5336</identifier><identifier>DOI: 10.1128/AEM.71.8.4602-4609.2005</identifier><identifier>PMID: 16085854</identifier><identifier>CODEN: AEMIDF</identifier><language>eng</language><publisher>Washington, DC: American Society for Microbiology</publisher><subject>Aldehyde-Lyases - biosynthesis ; Aldehyde-Lyases - chemistry ; Aldehyde-Lyases - genetics ; Aldehyde-Lyases - isolation & purification ; Amino Acid Sequence ; Bacteria ; Bacteriology ; Base Sequence ; Benzaldehydes - metabolism ; Binding Sites ; Biological and medical sciences ; Biology of microorganisms of confirmed or potential industrial interest ; Biotechnology ; Catalysis ; Enzyme Induction ; Enzymes ; Enzymology and Protein Engineering ; Escherichia coli ; Escherichia coli - enzymology ; Escherichia coli - genetics ; Fundamental and applied biological sciences. Psychology ; Glycine - metabolism ; Hydrogen-Ion Concentration ; Metabolism. Enzymes ; Microbiology ; Miscellaneous ; Mission oriented research ; Molecular Sequence Data ; Pseudomonas putida ; Pseudomonas putida - enzymology ; Pseudomonas putida - genetics ; Sequence Analysis, DNA ; Serine - analogs & derivatives ; Serine - metabolism ; Soils ; Substrate Specificity</subject><ispartof>Applied and Environmental Microbiology, 2005-08, Vol.71 (8), p.4602-4609</ispartof><rights>2006 INIST-CNRS</rights><rights>Copyright American Society for Microbiology Aug 2005</rights><rights>Copyright © 2005, American Society for Microbiology 2005</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c663t-9df1da31a57144b7a2168cc7ad2d459bed59b2554e99575a8e48357480757c6c3</citedby><cites>FETCH-LOGICAL-c663t-9df1da31a57144b7a2168cc7ad2d459bed59b2554e99575a8e48357480757c6c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC1183316/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC1183316/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,725,778,782,883,3177,3178,27907,27908,53774,53776</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=17048588$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16085854$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Misono, Haruo</creatorcontrib><creatorcontrib>Maeda, Hiroshi</creatorcontrib><creatorcontrib>Tuda, Kouiti</creatorcontrib><creatorcontrib>Ueshima, Sakuko</creatorcontrib><creatorcontrib>Miyazaki, Naoto</creatorcontrib><creatorcontrib>Nagata, Shinji</creatorcontrib><title>Characterization of an Inducible Phenylserine Aldolase from Pseudomonas putida 24-1</title><title>Applied and Environmental Microbiology</title><addtitle>Appl Environ Microbiol</addtitle><description>An inducible phenylserine aldolase (L-threo-3-phenylserine benzaldehyde-lyase, EC 4.1.2.26), which catalyzes the cleavage of L-3-phenylserine to yield benzaldehyde and glycine, was purified to homogeneity from a crude extract of Pseudomonas putida 24-1 isolated from soil. The enzyme was a hexamer with the apparent subunit molecular mass of 38 kDa and contained 0.7 mol of pyridoxal 5' phosphate per mol of the subunit. The enzyme exhibited absorption maxima at 280 and 420 nm. The maximal activity was obtained at about pH 8.5. The enzyme acted on L-threo-3-phenylserine (K[subscript m], 1.3 mM), L-erythro-3-phenylserine (K[subscript m], 4.6 mM), L-threonine (K[subscript m], 29 mM), and L-allo-threonine (K[subscript m], 22 mM). In the reverse reaction, threo- and erythro- forms of L-3-phenylserine were produced from benzaldehyde and glycine. The optimum pH for the reverse reaction was 7.5. The structural gene coding for the phenylserine aldolase from Pseudomonas putida 24-1 was cloned and overexpressed in Escherichia coli cells. The nucleotide sequence of the phenylserine aldolase gene encoded a peptide containing 357 amino acids with a calculated molecular mass of 37.4 kDa. The recombinant enzyme was purified and characterized. Site-directed mutagenesis experiments showed that replacement of K213 with Q resulted in a loss of the enzyme activity, with a disappearance of the absorption maximum at 420 nm. Thus, K213 of the enzyme probably functions as an essential catalytic residue, forming a Schiff base with pyridoxal 5'-phosphate.</description><subject>Aldehyde-Lyases - biosynthesis</subject><subject>Aldehyde-Lyases - chemistry</subject><subject>Aldehyde-Lyases - genetics</subject><subject>Aldehyde-Lyases - isolation & purification</subject><subject>Amino Acid Sequence</subject><subject>Bacteria</subject><subject>Bacteriology</subject><subject>Base Sequence</subject><subject>Benzaldehydes - metabolism</subject><subject>Binding Sites</subject><subject>Biological and medical sciences</subject><subject>Biology of microorganisms of confirmed or potential industrial interest</subject><subject>Biotechnology</subject><subject>Catalysis</subject><subject>Enzyme Induction</subject><subject>Enzymes</subject><subject>Enzymology and Protein Engineering</subject><subject>Escherichia coli</subject><subject>Escherichia coli - enzymology</subject><subject>Escherichia coli - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Glycine - metabolism</subject><subject>Hydrogen-Ion Concentration</subject><subject>Metabolism. Enzymes</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Mission oriented research</subject><subject>Molecular Sequence Data</subject><subject>Pseudomonas putida</subject><subject>Pseudomonas putida - enzymology</subject><subject>Pseudomonas putida - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Serine - analogs & derivatives</subject><subject>Serine - metabolism</subject><subject>Soils</subject><subject>Substrate Specificity</subject><issn>0099-2240</issn><issn>1098-5336</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpd0d9v0zAQB_AIgVgZ_AssIMFbwvlXbL9MqqoBk4aYNPZsXR2n9ZTExU5A46_HVSsKvJwf_LmzT9-iuCBQE0LVh-XVl1qSWtW8AVrlomsKIJ4UCwJaVYKx5mmxANC6opTDWfEipQcA4NCo58UZaUAJJfiiuFttMaKdXPS_cPJhLENX4lhej-1s_bp35e3WjY99ymB05bJvQ4_JlV0MQ3mb3NyGIYyYyt08-RZLyivysnjWYe54dTzPi_uPV99Wn6ubr5-uV8ubyjYNmyrddqRFRlBIwvlaIiWNslZiS1su9Nq1uVAhuNNaSIHKccWE5AqkkLax7Ly4PMzdzevBtdaNU8Te7KIfMD6agN78ezP6rdmEH4YQxRhp8oD3xwExfJ9dmszgk3V9j6MLczJEMk21IBm-_Q8-hDmOeTlDQWgJmsmM5AHZGFKKrvvzEwJmn5rJqRlJjDL71PZFm31qufP134uc-o4xZfDuCDBZ7LuIo_Xp5CTwDFV2bw5u6zfbnz46g2kw6IbTs9lcHEyHweAm5jn3dxQIAwIUuJDsN6bBtDw</recordid><startdate>20050801</startdate><enddate>20050801</enddate><creator>Misono, Haruo</creator><creator>Maeda, Hiroshi</creator><creator>Tuda, Kouiti</creator><creator>Ueshima, Sakuko</creator><creator>Miyazaki, Naoto</creator><creator>Nagata, Shinji</creator><general>American Society for Microbiology</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7SN</scope><scope>7SS</scope><scope>7ST</scope><scope>7T7</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>SOI</scope><scope>5PM</scope></search><sort><creationdate>20050801</creationdate><title>Characterization of an Inducible Phenylserine Aldolase from Pseudomonas putida 24-1</title><author>Misono, Haruo ; Maeda, Hiroshi ; Tuda, Kouiti ; Ueshima, Sakuko ; Miyazaki, Naoto ; Nagata, Shinji</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c663t-9df1da31a57144b7a2168cc7ad2d459bed59b2554e99575a8e48357480757c6c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Aldehyde-Lyases - biosynthesis</topic><topic>Aldehyde-Lyases - chemistry</topic><topic>Aldehyde-Lyases - genetics</topic><topic>Aldehyde-Lyases - isolation & purification</topic><topic>Amino Acid Sequence</topic><topic>Bacteria</topic><topic>Bacteriology</topic><topic>Base Sequence</topic><topic>Benzaldehydes - metabolism</topic><topic>Binding Sites</topic><topic>Biological and medical sciences</topic><topic>Biology of microorganisms of confirmed or potential industrial interest</topic><topic>Biotechnology</topic><topic>Catalysis</topic><topic>Enzyme Induction</topic><topic>Enzymes</topic><topic>Enzymology and Protein Engineering</topic><topic>Escherichia coli</topic><topic>Escherichia coli - enzymology</topic><topic>Escherichia coli - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Glycine - metabolism</topic><topic>Hydrogen-Ion Concentration</topic><topic>Metabolism. Enzymes</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Mission oriented research</topic><topic>Molecular Sequence Data</topic><topic>Pseudomonas putida</topic><topic>Pseudomonas putida - enzymology</topic><topic>Pseudomonas putida - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Serine - analogs & derivatives</topic><topic>Serine - metabolism</topic><topic>Soils</topic><topic>Substrate Specificity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Misono, Haruo</creatorcontrib><creatorcontrib>Maeda, Hiroshi</creatorcontrib><creatorcontrib>Tuda, Kouiti</creatorcontrib><creatorcontrib>Ueshima, Sakuko</creatorcontrib><creatorcontrib>Miyazaki, Naoto</creatorcontrib><creatorcontrib>Nagata, Shinji</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Environment Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Environment Abstracts</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Applied and Environmental Microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Misono, Haruo</au><au>Maeda, Hiroshi</au><au>Tuda, Kouiti</au><au>Ueshima, Sakuko</au><au>Miyazaki, Naoto</au><au>Nagata, Shinji</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization of an Inducible Phenylserine Aldolase from Pseudomonas putida 24-1</atitle><jtitle>Applied and Environmental Microbiology</jtitle><addtitle>Appl Environ Microbiol</addtitle><date>2005-08-01</date><risdate>2005</risdate><volume>71</volume><issue>8</issue><spage>4602</spage><epage>4609</epage><pages>4602-4609</pages><issn>0099-2240</issn><eissn>1098-5336</eissn><coden>AEMIDF</coden><abstract>An inducible phenylserine aldolase (L-threo-3-phenylserine benzaldehyde-lyase, EC 4.1.2.26), which catalyzes the cleavage of L-3-phenylserine to yield benzaldehyde and glycine, was purified to homogeneity from a crude extract of Pseudomonas putida 24-1 isolated from soil. The enzyme was a hexamer with the apparent subunit molecular mass of 38 kDa and contained 0.7 mol of pyridoxal 5' phosphate per mol of the subunit. The enzyme exhibited absorption maxima at 280 and 420 nm. The maximal activity was obtained at about pH 8.5. The enzyme acted on L-threo-3-phenylserine (K[subscript m], 1.3 mM), L-erythro-3-phenylserine (K[subscript m], 4.6 mM), L-threonine (K[subscript m], 29 mM), and L-allo-threonine (K[subscript m], 22 mM). In the reverse reaction, threo- and erythro- forms of L-3-phenylserine were produced from benzaldehyde and glycine. The optimum pH for the reverse reaction was 7.5. The structural gene coding for the phenylserine aldolase from Pseudomonas putida 24-1 was cloned and overexpressed in Escherichia coli cells. The nucleotide sequence of the phenylserine aldolase gene encoded a peptide containing 357 amino acids with a calculated molecular mass of 37.4 kDa. The recombinant enzyme was purified and characterized. Site-directed mutagenesis experiments showed that replacement of K213 with Q resulted in a loss of the enzyme activity, with a disappearance of the absorption maximum at 420 nm. Thus, K213 of the enzyme probably functions as an essential catalytic residue, forming a Schiff base with pyridoxal 5'-phosphate.</abstract><cop>Washington, DC</cop><pub>American Society for Microbiology</pub><pmid>16085854</pmid><doi>10.1128/AEM.71.8.4602-4609.2005</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Aldehyde-Lyases - biosynthesis Aldehyde-Lyases - chemistry Aldehyde-Lyases - genetics Aldehyde-Lyases - isolation & purification Amino Acid Sequence Bacteria Bacteriology Base Sequence Benzaldehydes - metabolism Binding Sites Biological and medical sciences Biology of microorganisms of confirmed or potential industrial interest Biotechnology Catalysis Enzyme Induction Enzymes Enzymology and Protein Engineering Escherichia coli Escherichia coli - enzymology Escherichia coli - genetics Fundamental and applied biological sciences. Psychology Glycine - metabolism Hydrogen-Ion Concentration Metabolism. Enzymes Microbiology Miscellaneous Mission oriented research Molecular Sequence Data Pseudomonas putida Pseudomonas putida - enzymology Pseudomonas putida - genetics Sequence Analysis, DNA Serine - analogs & derivatives Serine - metabolism Soils Substrate Specificity |
title | Characterization of an Inducible Phenylserine Aldolase from Pseudomonas putida 24-1 |
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