Reclassification of Haloactinobacterium glacieicola as Occultella glacieicola gen. nov., comb. nov., of Haloactinobacterium album as Ruania alba comb. nov, with an emended description of the genus Ruania , recognition that the genus names Haloactinobacterium and Ruania are heterotypic synonyms and description of Occultella aeris sp. nov., a halotolerant isolate from surface soil sampled at an ancient copper smelter
In the course of screening the surface soils of ancient copper mines and smelters (East Harz, Germany) an aerobic, non-motile and halotolerant actinobacterium forming small rods or cocci was isolated. The strain designated F300 developed creamy to yellow colonies on tryptone soy agar and grew optima...
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| creator | Schumann, Peter Kalensee, Franziska Cao, Jialan Criscuolo, Alexis Clermont, Dominique Köhler, Johann Michael Meier-Kolthoff, Jan P Neumann-Schaal, Meina Tindall, Brian J Pukall, Rüdiger |
| description | In the course of screening the surface soils of ancient copper mines and smelters (East Harz, Germany) an aerobic, non-motile and halotolerant actinobacterium forming small rods or cocci was isolated. The strain designated F300
developed creamy to yellow colonies on tryptone soy agar and grew optimally at 28 °C, pH 7-8 and with 0.5-2 % (m/v) NaCl. Its peptidoglycan was of type A4α l-Lys-l-Glu (A11.54). The menaquinone profile was dominated by MK-8(II, III-H
) and contained minor amounts of MK-8(H
), MK-8(H
) and MK-9(H
). The polar lipids comprised diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, mono and diacylated phosphatidylinositol dimannosides, and components that were not fully characterized, including two phospholipids, two glycolipids and an uncharacterized lipid. Major whole-cell sugars were rhamnose and ribose. The fatty acid profile contained mainly iso and anteiso branched fatty acids (anteiso-C
, iso-C
) and aldehydes/dimethylacetals (i.e. not fatty acids). Sequence analysis of its genomic DNA and subsequent analysis of the data placed the isolate in the group currently defined by members of the genera
and
(family
, order
) as a sister taxon to the previously described species
, sharing an average nucleotide identity and average amino acid identity values of 85.3 and 85.7 %, respectively. Genotypic and chemotaxonomic analyses support the view that strain F300
(=DSM 108350
=CIP 111667
) is the type strain of a new genus and new species for which the name
gen. nov., sp. nov. is proposed. Based on revised chemotaxonomic and additional genome based data, it is necessary to discuss and evaluate the results in the light of the classification and nomenclature of members of the family
, i.e. the genera
and
. Consequently, the reclassification of
as
comb. nov. and
as
comb. nov., with an emended description of the genus
are proposed. |
| doi_str_mv | 10.1099/ijsem.0.004769 |
| format | Article |
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developed creamy to yellow colonies on tryptone soy agar and grew optimally at 28 °C, pH 7-8 and with 0.5-2 % (m/v) NaCl. Its peptidoglycan was of type A4α l-Lys-l-Glu (A11.54). The menaquinone profile was dominated by MK-8(II, III-H
) and contained minor amounts of MK-8(H
), MK-8(H
) and MK-9(H
). The polar lipids comprised diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, mono and diacylated phosphatidylinositol dimannosides, and components that were not fully characterized, including two phospholipids, two glycolipids and an uncharacterized lipid. Major whole-cell sugars were rhamnose and ribose. The fatty acid profile contained mainly iso and anteiso branched fatty acids (anteiso-C
, iso-C
) and aldehydes/dimethylacetals (i.e. not fatty acids). Sequence analysis of its genomic DNA and subsequent analysis of the data placed the isolate in the group currently defined by members of the genera
and
(family
, order
) as a sister taxon to the previously described species
, sharing an average nucleotide identity and average amino acid identity values of 85.3 and 85.7 %, respectively. Genotypic and chemotaxonomic analyses support the view that strain F300
(=DSM 108350
=CIP 111667
) is the type strain of a new genus and new species for which the name
gen. nov., sp. nov. is proposed. Based on revised chemotaxonomic and additional genome based data, it is necessary to discuss and evaluate the results in the light of the classification and nomenclature of members of the family
, i.e. the genera
and
. Consequently, the reclassification of
as
comb. nov. and
as
comb. nov., with an emended description of the genus
are proposed.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.004769</identifier><identifier>PMID: 33835911</identifier><language>eng</language><publisher>England: Microbiology Society</publisher><subject>Actinobacteria ; Actinobacteria - classification ; Actinobacteria - isolation & purification ; Bacterial Typing Techniques ; Base Composition ; Copper ; DNA, Bacterial ; DNA, Bacterial - genetics ; Environmental Sciences ; Fatty Acids ; Fatty Acids - chemistry ; Germany ; Life Sciences ; Peptidoglycan ; Peptidoglycan - chemistry ; Phospholipids ; Phospholipids - chemistry ; Phylogeny ; RNA, Ribosomal, 16S ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Soil Microbiology ; Vitamin K 2 ; Vitamin K 2 - analogs & derivatives ; Vitamin K 2 - chemistry</subject><ispartof>International journal of systematic and evolutionary microbiology, 2021-04, Vol.71 (4)</ispartof><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c373t-84e0aed625df59a450d3aa2d71e55be8fc0b1752d547fb15a4327e5f82b19a443</citedby><cites>FETCH-LOGICAL-c373t-84e0aed625df59a450d3aa2d71e55be8fc0b1752d547fb15a4327e5f82b19a443</cites><orcidid>0000-0002-8212-5215 ; 0000-0002-2251-4091 ; 0000-0002-1641-019X ; 0000-0002-5645-5077 ; 0000-0002-6018-2462 ; 0000-0001-9105-9814</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,885,3744,27922,27923</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33835911$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://pasteur.hal.science/pasteur-03259751$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Schumann, Peter</creatorcontrib><creatorcontrib>Kalensee, Franziska</creatorcontrib><creatorcontrib>Cao, Jialan</creatorcontrib><creatorcontrib>Criscuolo, Alexis</creatorcontrib><creatorcontrib>Clermont, Dominique</creatorcontrib><creatorcontrib>Köhler, Johann Michael</creatorcontrib><creatorcontrib>Meier-Kolthoff, Jan P</creatorcontrib><creatorcontrib>Neumann-Schaal, Meina</creatorcontrib><creatorcontrib>Tindall, Brian J</creatorcontrib><creatorcontrib>Pukall, Rüdiger</creatorcontrib><title>Reclassification of Haloactinobacterium glacieicola as Occultella glacieicola gen. nov., comb. nov., of Haloactinobacterium album as Ruania alba comb. nov, with an emended description of the genus Ruania , recognition that the genus names Haloactinobacterium and Ruania are heterotypic synonyms and description of Occultella aeris sp. nov., a halotolerant isolate from surface soil sampled at an ancient copper smelter</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>In the course of screening the surface soils of ancient copper mines and smelters (East Harz, Germany) an aerobic, non-motile and halotolerant actinobacterium forming small rods or cocci was isolated. The strain designated F300
developed creamy to yellow colonies on tryptone soy agar and grew optimally at 28 °C, pH 7-8 and with 0.5-2 % (m/v) NaCl. Its peptidoglycan was of type A4α l-Lys-l-Glu (A11.54). The menaquinone profile was dominated by MK-8(II, III-H
) and contained minor amounts of MK-8(H
), MK-8(H
) and MK-9(H
). The polar lipids comprised diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, mono and diacylated phosphatidylinositol dimannosides, and components that were not fully characterized, including two phospholipids, two glycolipids and an uncharacterized lipid. Major whole-cell sugars were rhamnose and ribose. The fatty acid profile contained mainly iso and anteiso branched fatty acids (anteiso-C
, iso-C
) and aldehydes/dimethylacetals (i.e. not fatty acids). Sequence analysis of its genomic DNA and subsequent analysis of the data placed the isolate in the group currently defined by members of the genera
and
(family
, order
) as a sister taxon to the previously described species
, sharing an average nucleotide identity and average amino acid identity values of 85.3 and 85.7 %, respectively. Genotypic and chemotaxonomic analyses support the view that strain F300
(=DSM 108350
=CIP 111667
) is the type strain of a new genus and new species for which the name
gen. nov., sp. nov. is proposed. Based on revised chemotaxonomic and additional genome based data, it is necessary to discuss and evaluate the results in the light of the classification and nomenclature of members of the family
, i.e. the genera
and
. Consequently, the reclassification of
as
comb. nov. and
as
comb. nov., with an emended description of the genus
are proposed.</description><subject>Actinobacteria</subject><subject>Actinobacteria - classification</subject><subject>Actinobacteria - isolation & purification</subject><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>Copper</subject><subject>DNA, Bacterial</subject><subject>DNA, Bacterial - genetics</subject><subject>Environmental Sciences</subject><subject>Fatty Acids</subject><subject>Fatty Acids - chemistry</subject><subject>Germany</subject><subject>Life Sciences</subject><subject>Peptidoglycan</subject><subject>Peptidoglycan - chemistry</subject><subject>Phospholipids</subject><subject>Phospholipids - chemistry</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Soil Microbiology</subject><subject>Vitamin K 2</subject><subject>Vitamin K 2 - analogs & derivatives</subject><subject>Vitamin K 2 - chemistry</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kk2P0zAQhgMCscvClSPykUMb7CRumuNqxVKkSiut4BxNnEnrVWwHj7Oof4dfuk67LRWCiz-feeed0STJB8FTwavqs34gNClPOS_KRfUyuRTFYjGXPC9enc7Z4iJ5S_TAeXzg_E1ykefLXFZCXL74fY-qByLdaQVBO8tcx1bQO1BBW9fEDb0eDdv0oDRq5XpgQOxOqbEP2Mfb-c8Gbcqse0xnTDnTHM__0YS-mVZi9yNYDdMd_sTN2C8dtgwsQ4O2xZa1SMrr4WgzbHFKOJ7iZ8yjchur90TYQjhjLBikf9uw7cmBR7bF-O7CbtCK0c46uzO0Z_5Kf9YCiELEaDjWC2wb8wTXowcbmKbYm4Cs884wGn0HChk53TMCM_Sxsug01gk2NjLyyg0DekYGo75_l7zuoCd8_7xfJT9uv3y_Wc3Xd1-_3Vyv5yov8zBfFsgB20Um205WUEje5gBZWwqUssFlp3gjSpm1sii7Rkgo8qxE2S2zRkS8yK-S-UE3eq8Hrw34Xe1A16vrdT0ABRx9zfNMVqUUjyLynw784N3PESnURpOa-mHRjVRnUoisKDM5SacHVHlH5LE76QteT3Nc7-e45vVhjmPAx2ftsTHYnvDj4OZP_8T6Kg</recordid><startdate>20210409</startdate><enddate>20210409</enddate><creator>Schumann, Peter</creator><creator>Kalensee, Franziska</creator><creator>Cao, Jialan</creator><creator>Criscuolo, Alexis</creator><creator>Clermont, Dominique</creator><creator>Köhler, Johann Michael</creator><creator>Meier-Kolthoff, Jan P</creator><creator>Neumann-Schaal, Meina</creator><creator>Tindall, Brian J</creator><creator>Pukall, Rüdiger</creator><general>Microbiology Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>1XC</scope><orcidid>https://orcid.org/0000-0002-8212-5215</orcidid><orcidid>https://orcid.org/0000-0002-2251-4091</orcidid><orcidid>https://orcid.org/0000-0002-1641-019X</orcidid><orcidid>https://orcid.org/0000-0002-5645-5077</orcidid><orcidid>https://orcid.org/0000-0002-6018-2462</orcidid><orcidid>https://orcid.org/0000-0001-9105-9814</orcidid></search><sort><creationdate>20210409</creationdate><title>Reclassification of Haloactinobacterium glacieicola as Occultella glacieicola gen. nov., comb. nov., of Haloactinobacterium album as Ruania alba comb. nov, with an emended description of the genus Ruania , recognition that the genus names Haloactinobacterium and Ruania are heterotypic synonyms and description of Occultella aeris sp. nov., a halotolerant isolate from surface soil sampled at an ancient copper smelter</title><author>Schumann, Peter ; Kalensee, Franziska ; Cao, Jialan ; Criscuolo, Alexis ; Clermont, Dominique ; Köhler, Johann Michael ; Meier-Kolthoff, Jan P ; Neumann-Schaal, Meina ; Tindall, Brian J ; Pukall, Rüdiger</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c373t-84e0aed625df59a450d3aa2d71e55be8fc0b1752d547fb15a4327e5f82b19a443</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Actinobacteria</topic><topic>Actinobacteria - classification</topic><topic>Actinobacteria - isolation & purification</topic><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>Copper</topic><topic>DNA, Bacterial</topic><topic>DNA, Bacterial - genetics</topic><topic>Environmental Sciences</topic><topic>Fatty Acids</topic><topic>Fatty Acids - chemistry</topic><topic>Germany</topic><topic>Life Sciences</topic><topic>Peptidoglycan</topic><topic>Peptidoglycan - chemistry</topic><topic>Phospholipids</topic><topic>Phospholipids - chemistry</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Soil Microbiology</topic><topic>Vitamin K 2</topic><topic>Vitamin K 2 - analogs & derivatives</topic><topic>Vitamin K 2 - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Schumann, Peter</creatorcontrib><creatorcontrib>Kalensee, Franziska</creatorcontrib><creatorcontrib>Cao, Jialan</creatorcontrib><creatorcontrib>Criscuolo, Alexis</creatorcontrib><creatorcontrib>Clermont, Dominique</creatorcontrib><creatorcontrib>Köhler, Johann Michael</creatorcontrib><creatorcontrib>Meier-Kolthoff, Jan P</creatorcontrib><creatorcontrib>Neumann-Schaal, Meina</creatorcontrib><creatorcontrib>Tindall, Brian J</creatorcontrib><creatorcontrib>Pukall, Rüdiger</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Schumann, Peter</au><au>Kalensee, Franziska</au><au>Cao, Jialan</au><au>Criscuolo, Alexis</au><au>Clermont, Dominique</au><au>Köhler, Johann Michael</au><au>Meier-Kolthoff, Jan P</au><au>Neumann-Schaal, Meina</au><au>Tindall, Brian J</au><au>Pukall, Rüdiger</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Reclassification of Haloactinobacterium glacieicola as Occultella glacieicola gen. nov., comb. nov., of Haloactinobacterium album as Ruania alba comb. nov, with an emended description of the genus Ruania , recognition that the genus names Haloactinobacterium and Ruania are heterotypic synonyms and description of Occultella aeris sp. nov., a halotolerant isolate from surface soil sampled at an ancient copper smelter</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2021-04-09</date><risdate>2021</risdate><volume>71</volume><issue>4</issue><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>In the course of screening the surface soils of ancient copper mines and smelters (East Harz, Germany) an aerobic, non-motile and halotolerant actinobacterium forming small rods or cocci was isolated. The strain designated F300
developed creamy to yellow colonies on tryptone soy agar and grew optimally at 28 °C, pH 7-8 and with 0.5-2 % (m/v) NaCl. Its peptidoglycan was of type A4α l-Lys-l-Glu (A11.54). The menaquinone profile was dominated by MK-8(II, III-H
) and contained minor amounts of MK-8(H
), MK-8(H
) and MK-9(H
). The polar lipids comprised diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, mono and diacylated phosphatidylinositol dimannosides, and components that were not fully characterized, including two phospholipids, two glycolipids and an uncharacterized lipid. Major whole-cell sugars were rhamnose and ribose. The fatty acid profile contained mainly iso and anteiso branched fatty acids (anteiso-C
, iso-C
) and aldehydes/dimethylacetals (i.e. not fatty acids). Sequence analysis of its genomic DNA and subsequent analysis of the data placed the isolate in the group currently defined by members of the genera
and
(family
, order
) as a sister taxon to the previously described species
, sharing an average nucleotide identity and average amino acid identity values of 85.3 and 85.7 %, respectively. Genotypic and chemotaxonomic analyses support the view that strain F300
(=DSM 108350
=CIP 111667
) is the type strain of a new genus and new species for which the name
gen. nov., sp. nov. is proposed. Based on revised chemotaxonomic and additional genome based data, it is necessary to discuss and evaluate the results in the light of the classification and nomenclature of members of the family
, i.e. the genera
and
. Consequently, the reclassification of
as
comb. nov. and
as
comb. nov., with an emended description of the genus
are proposed.</abstract><cop>England</cop><pub>Microbiology Society</pub><pmid>33835911</pmid><doi>10.1099/ijsem.0.004769</doi><orcidid>https://orcid.org/0000-0002-8212-5215</orcidid><orcidid>https://orcid.org/0000-0002-2251-4091</orcidid><orcidid>https://orcid.org/0000-0002-1641-019X</orcidid><orcidid>https://orcid.org/0000-0002-5645-5077</orcidid><orcidid>https://orcid.org/0000-0002-6018-2462</orcidid><orcidid>https://orcid.org/0000-0001-9105-9814</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1466-5026 |
| ispartof | International journal of systematic and evolutionary microbiology, 2021-04, Vol.71 (4) |
| issn | 1466-5026 1466-5034 |
| language | eng |
| recordid | cdi_hal_primary_oai_HAL_pasteur_03259751v1 |
| source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Actinobacteria Actinobacteria - classification Actinobacteria - isolation & purification Bacterial Typing Techniques Base Composition Copper DNA, Bacterial DNA, Bacterial - genetics Environmental Sciences Fatty Acids Fatty Acids - chemistry Germany Life Sciences Peptidoglycan Peptidoglycan - chemistry Phospholipids Phospholipids - chemistry Phylogeny RNA, Ribosomal, 16S RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Soil Microbiology Vitamin K 2 Vitamin K 2 - analogs & derivatives Vitamin K 2 - chemistry |
| title | Reclassification of Haloactinobacterium glacieicola as Occultella glacieicola gen. nov., comb. nov., of Haloactinobacterium album as Ruania alba comb. nov, with an emended description of the genus Ruania , recognition that the genus names Haloactinobacterium and Ruania are heterotypic synonyms and description of Occultella aeris sp. nov., a halotolerant isolate from surface soil sampled at an ancient copper smelter |
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