Unearthing Optimal Symbiotic Rhizobia Partners from the Main Production Area of Phaseolus vulgaris in Yunnan
is a globally important legume cash crop, which can carry out symbiotic nitrogen fixation with rhizobia. The presence of suitable rhizobia in cultivating soils is crucial for legume cropping, especially in areas beyond the plant-host native range, where soils may lack efficient symbiotic partners. W...
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description | is a globally important legume cash crop, which can carry out symbiotic nitrogen fixation with rhizobia. The presence of suitable rhizobia in cultivating soils is crucial for legume cropping, especially in areas beyond the plant-host native range, where soils may lack efficient symbiotic partners. We analyzed the distribution patterns and traits of native rhizobia associated with
in soils of Yunnan, where the common bean experienced a recent expansion. A total of 608 rhizobial isolates were tracked from soils of fifteen sampling sites using two local varieties of
. The isolates were discriminated into 43 genotypes as defined by IGS PCR-RFLP. Multiple locus sequence analysis based on
,
and
of representative strains placed them into 11 rhizobial species of
involving
,
,
,
,
,
,
,
,
,
and
, and five unknown
species;
genosp. I~V.
and
were the dominant species (28.0% and 28.8%) most widely distributed, followed by
(14.8%). The other rhizobial species were less numerous or site-specific. Phylogenies of
and
H markers, were divided into two specific symbiovars, sv. phaseoli regardless of the species affiliation and sv. viciae associated with
. Through symbiotic effect assessment, all the tested strains nodulated both
varieties, often resulting with a significant greenness index (91-98%). However, about half of them exhibited better plant biomass performance, at least on one common bean variety, and two isolates (CYAH-6 and BLYH-15) showed a better symbiotic efficiency score. Representative strains revealed diverse abiotic stress tolerance to NaCl, acidity, alkalinity, temperature, drought and glyphosate. One strain efficient on both varieties and exhibiting stress abiotic tolerance (BLYH-15) belonged to
genosp. IV sv. phaseoli, a species first found as a legume symbiont. |
doi_str_mv | 10.3390/ijms25158511 |
format | Article |
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in soils of Yunnan, where the common bean experienced a recent expansion. A total of 608 rhizobial isolates were tracked from soils of fifteen sampling sites using two local varieties of
. The isolates were discriminated into 43 genotypes as defined by IGS PCR-RFLP. Multiple locus sequence analysis based on
,
and
of representative strains placed them into 11 rhizobial species of
involving
,
,
,
,
,
,
,
,
,
and
, and five unknown
species;
genosp. I~V.
and
were the dominant species (28.0% and 28.8%) most widely distributed, followed by
(14.8%). The other rhizobial species were less numerous or site-specific. Phylogenies of
and
H markers, were divided into two specific symbiovars, sv. phaseoli regardless of the species affiliation and sv. viciae associated with
. Through symbiotic effect assessment, all the tested strains nodulated both
varieties, often resulting with a significant greenness index (91-98%). However, about half of them exhibited better plant biomass performance, at least on one common bean variety, and two isolates (CYAH-6 and BLYH-15) showed a better symbiotic efficiency score. Representative strains revealed diverse abiotic stress tolerance to NaCl, acidity, alkalinity, temperature, drought and glyphosate. One strain efficient on both varieties and exhibiting stress abiotic tolerance (BLYH-15) belonged to
genosp. IV sv. phaseoli, a species first found as a legume symbiont.</description><identifier>ISSN: 1422-0067</identifier><identifier>ISSN: 1661-6596</identifier><identifier>EISSN: 1422-0067</identifier><identifier>DOI: 10.3390/ijms25158511</identifier><identifier>PMID: 39126082</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Abiotic stress ; Agricultural sciences ; Agriculture ; Agronomy ; Beans ; China ; Domestication ; Fertilizers ; Legumes ; Life Sciences ; Mimosaceae ; Nitrogen ; Nitrogen Fixation - genetics ; Pesticides ; Phaseolus - growth & development ; Phaseolus - microbiology ; Phylogeny ; Provinces ; Rhizobium - genetics ; Rhizobium - physiology ; Root Nodules, Plant - microbiology ; Salt ; Soil Microbiology ; Soil study ; Soybeans ; Sustainable development ; Symbiosis</subject><ispartof>International journal of molecular sciences, 2024-08, Vol.25 (15), p.8511</ispartof><rights>COPYRIGHT 2024 MDPI AG</rights><rights>2024 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Attribution</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c317t-2efaa87056b6f10529671c927202e74e359a07b9bcf23d13182b1fcfd50ac06c3</cites><orcidid>0000-0002-9951-660X ; 0000-0002-3424-3882</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,776,780,881,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39126082$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.inrae.fr/hal-04678104$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Junjie</creatorcontrib><creatorcontrib>Wang, Jingqi</creatorcontrib><creatorcontrib>Feng, Yufeng</creatorcontrib><creatorcontrib>Brunel, Brigitte</creatorcontrib><creatorcontrib>Zong, Xuxiao</creatorcontrib><title>Unearthing Optimal Symbiotic Rhizobia Partners from the Main Production Area of Phaseolus vulgaris in Yunnan</title><title>International journal of molecular sciences</title><addtitle>Int J Mol Sci</addtitle><description>is a globally important legume cash crop, which can carry out symbiotic nitrogen fixation with rhizobia. The presence of suitable rhizobia in cultivating soils is crucial for legume cropping, especially in areas beyond the plant-host native range, where soils may lack efficient symbiotic partners. We analyzed the distribution patterns and traits of native rhizobia associated with
in soils of Yunnan, where the common bean experienced a recent expansion. A total of 608 rhizobial isolates were tracked from soils of fifteen sampling sites using two local varieties of
. The isolates were discriminated into 43 genotypes as defined by IGS PCR-RFLP. Multiple locus sequence analysis based on
,
and
of representative strains placed them into 11 rhizobial species of
involving
,
,
,
,
,
,
,
,
,
and
, and five unknown
species;
genosp. I~V.
and
were the dominant species (28.0% and 28.8%) most widely distributed, followed by
(14.8%). The other rhizobial species were less numerous or site-specific. Phylogenies of
and
H markers, were divided into two specific symbiovars, sv. phaseoli regardless of the species affiliation and sv. viciae associated with
. Through symbiotic effect assessment, all the tested strains nodulated both
varieties, often resulting with a significant greenness index (91-98%). However, about half of them exhibited better plant biomass performance, at least on one common bean variety, and two isolates (CYAH-6 and BLYH-15) showed a better symbiotic efficiency score. Representative strains revealed diverse abiotic stress tolerance to NaCl, acidity, alkalinity, temperature, drought and glyphosate. One strain efficient on both varieties and exhibiting stress abiotic tolerance (BLYH-15) belonged to
genosp. IV sv. phaseoli, a species first found as a legume symbiont.</description><subject>Abiotic stress</subject><subject>Agricultural sciences</subject><subject>Agriculture</subject><subject>Agronomy</subject><subject>Beans</subject><subject>China</subject><subject>Domestication</subject><subject>Fertilizers</subject><subject>Legumes</subject><subject>Life Sciences</subject><subject>Mimosaceae</subject><subject>Nitrogen</subject><subject>Nitrogen Fixation - genetics</subject><subject>Pesticides</subject><subject>Phaseolus - growth & development</subject><subject>Phaseolus - microbiology</subject><subject>Phylogeny</subject><subject>Provinces</subject><subject>Rhizobium - genetics</subject><subject>Rhizobium - physiology</subject><subject>Root Nodules, Plant - microbiology</subject><subject>Salt</subject><subject>Soil Microbiology</subject><subject>Soil study</subject><subject>Soybeans</subject><subject>Sustainable development</subject><subject>Symbiosis</subject><issn>1422-0067</issn><issn>1661-6596</issn><issn>1422-0067</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNpd0UFrHCEUB_ChtDRp2lvPReilhWz61HHU4xKSprAhS9ocehLH0R2XGd3qTCD59HXZNITiQXn8lPf8V9VHDGeUSvjmt2MmDDPBMH5VHeOakAVAw1-_OB9V73LeAhBKmHxbHVGJSQOCHFfDXbA6Tb0PG3Szm_yoB_TzYWx9nLxBt71_jK3XaF1MsCkjl-KIpt6ia-0DWqfYzWbyMaBlshpFh9a9zjYOc0b387DRyWdU4O85BB3eV2-cHrL98LSfVHeXF7_Orxarm-8_zperhaGYTwtindaCA2vaxmFgRDYcG0k4AWJ5bSmTGngrW-MI7TDFgrTYGdcx0AYaQ0-qr4d3ez2oXSpDpQcVtVdXy5Xa16BuuMBQ3-NivxzsLsU_s82TGn02dhh0sHHOikL5KyGx3NPP_9FtnFMok-wVSMoEqYs6O6iNHqzywcUpaVNWZ0dvYrDOl_pSQF0C40KWC6eHCybFnJN1zy1jUPuI1cuIC__01MXcjrZ7xv8ypX8B4KqgQQ</recordid><startdate>20240804</startdate><enddate>20240804</enddate><creator>Zhang, Junjie</creator><creator>Wang, Jingqi</creator><creator>Feng, Yufeng</creator><creator>Brunel, Brigitte</creator><creator>Zong, Xuxiao</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><scope>1XC</scope><scope>VOOES</scope><orcidid>https://orcid.org/0000-0002-9951-660X</orcidid><orcidid>https://orcid.org/0000-0002-3424-3882</orcidid></search><sort><creationdate>20240804</creationdate><title>Unearthing Optimal Symbiotic Rhizobia Partners from the Main Production Area of Phaseolus vulgaris in Yunnan</title><author>Zhang, Junjie ; Wang, Jingqi ; Feng, Yufeng ; Brunel, Brigitte ; Zong, Xuxiao</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c317t-2efaa87056b6f10529671c927202e74e359a07b9bcf23d13182b1fcfd50ac06c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Abiotic stress</topic><topic>Agricultural sciences</topic><topic>Agriculture</topic><topic>Agronomy</topic><topic>Beans</topic><topic>China</topic><topic>Domestication</topic><topic>Fertilizers</topic><topic>Legumes</topic><topic>Life Sciences</topic><topic>Mimosaceae</topic><topic>Nitrogen</topic><topic>Nitrogen Fixation - genetics</topic><topic>Pesticides</topic><topic>Phaseolus - growth & development</topic><topic>Phaseolus - microbiology</topic><topic>Phylogeny</topic><topic>Provinces</topic><topic>Rhizobium - genetics</topic><topic>Rhizobium - physiology</topic><topic>Root Nodules, Plant - microbiology</topic><topic>Salt</topic><topic>Soil Microbiology</topic><topic>Soil study</topic><topic>Soybeans</topic><topic>Sustainable development</topic><topic>Symbiosis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Junjie</creatorcontrib><creatorcontrib>Wang, Jingqi</creatorcontrib><creatorcontrib>Feng, Yufeng</creatorcontrib><creatorcontrib>Brunel, Brigitte</creatorcontrib><creatorcontrib>Zong, Xuxiao</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><collection>Hyper Article en Ligne (HAL) (Open Access)</collection><jtitle>International journal of molecular sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Junjie</au><au>Wang, Jingqi</au><au>Feng, Yufeng</au><au>Brunel, Brigitte</au><au>Zong, Xuxiao</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Unearthing Optimal Symbiotic Rhizobia Partners from the Main Production Area of Phaseolus vulgaris in Yunnan</atitle><jtitle>International journal of molecular sciences</jtitle><addtitle>Int J Mol Sci</addtitle><date>2024-08-04</date><risdate>2024</risdate><volume>25</volume><issue>15</issue><spage>8511</spage><pages>8511-</pages><issn>1422-0067</issn><issn>1661-6596</issn><eissn>1422-0067</eissn><abstract>is a globally important legume cash crop, which can carry out symbiotic nitrogen fixation with rhizobia. The presence of suitable rhizobia in cultivating soils is crucial for legume cropping, especially in areas beyond the plant-host native range, where soils may lack efficient symbiotic partners. We analyzed the distribution patterns and traits of native rhizobia associated with
in soils of Yunnan, where the common bean experienced a recent expansion. A total of 608 rhizobial isolates were tracked from soils of fifteen sampling sites using two local varieties of
. The isolates were discriminated into 43 genotypes as defined by IGS PCR-RFLP. Multiple locus sequence analysis based on
,
and
of representative strains placed them into 11 rhizobial species of
involving
,
,
,
,
,
,
,
,
,
and
, and five unknown
species;
genosp. I~V.
and
were the dominant species (28.0% and 28.8%) most widely distributed, followed by
(14.8%). The other rhizobial species were less numerous or site-specific. Phylogenies of
and
H markers, were divided into two specific symbiovars, sv. phaseoli regardless of the species affiliation and sv. viciae associated with
. Through symbiotic effect assessment, all the tested strains nodulated both
varieties, often resulting with a significant greenness index (91-98%). However, about half of them exhibited better plant biomass performance, at least on one common bean variety, and two isolates (CYAH-6 and BLYH-15) showed a better symbiotic efficiency score. Representative strains revealed diverse abiotic stress tolerance to NaCl, acidity, alkalinity, temperature, drought and glyphosate. One strain efficient on both varieties and exhibiting stress abiotic tolerance (BLYH-15) belonged to
genosp. IV sv. phaseoli, a species first found as a legume symbiont.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>39126082</pmid><doi>10.3390/ijms25158511</doi><orcidid>https://orcid.org/0000-0002-9951-660X</orcidid><orcidid>https://orcid.org/0000-0002-3424-3882</orcidid><oa>free_for_read</oa></addata></record> |
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source | MDPI - Multidisciplinary Digital Publishing Institute; MEDLINE; EZB-FREE-00999 freely available EZB journals; PubMed Central |
subjects | Abiotic stress Agricultural sciences Agriculture Agronomy Beans China Domestication Fertilizers Legumes Life Sciences Mimosaceae Nitrogen Nitrogen Fixation - genetics Pesticides Phaseolus - growth & development Phaseolus - microbiology Phylogeny Provinces Rhizobium - genetics Rhizobium - physiology Root Nodules, Plant - microbiology Salt Soil Microbiology Soil study Soybeans Sustainable development Symbiosis |
title | Unearthing Optimal Symbiotic Rhizobia Partners from the Main Production Area of Phaseolus vulgaris in Yunnan |
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