Population genomics of Corsican wildcats: Paving the way toward a new subspecies within the Felis silvestris spp. complex?
In the context of the current extinction crisis, identifying new conservation units is pivotal to the development of sound conservation measures, especially in highly threatened taxa such as felids. Corsican wildcats are known by Corsican people since a very long time but have been little studied. M...
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Veröffentlicht in: | Molecular ecology 2023-04, Vol.32 (8), p.1908-1924 |
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container_end_page | 1924 |
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container_issue | 8 |
container_start_page | 1908 |
container_title | Molecular ecology |
container_volume | 32 |
creator | Portanier, Elodie Henri, Hélène Benedetti, Pierre Sanchis, Frédéric Régis, Corinne Chevret, Pascale Zedda, Marco El Filali, Adil Ruette, Sandrine Devillard, Sébastien |
description | In the context of the current extinction crisis, identifying new conservation units is pivotal to the development of sound conservation measures, especially in highly threatened taxa such as felids. Corsican wildcats are known by Corsican people since a very long time but have been little studied. Meaningful information about their phylogenetic position is lacking. We used ddRADseq to genotype phenotypically homogenous Corsican wildcats at 3671 genome‐wide SNPs and reported for the first time their genetic identity. We compared this genomic information to domestic cats Felis silvestris catus from Corsica and mainland France, European wildcats F. s. silvestris and Sardinian wildcats F. s. lybica. Our premise was that if the Corsican wildcat, as a phenotypic entity, also represents a genetic entity, it deserves conservation measures and to be recognized as a conservation unit. Corsican wildcats appeared highly genetically differentiated from European wildcats and genetically closer to Sardinian wildcats than to domestic cats. Domestic cats from Corsica and mainland France were closer to each other and Sardinian wildcats were intermediate between Corsican wildcats and domestic cats. This suggested that Corsican wildcats do not belong to the F. s. silvestris or catus lineages. The inclusion of more high‐quality Sardinian samples and Near‐Eastern mainland F. s. lybica would constitute the next step toward assessing the status of Corsican wildcat as a subspecies and/or evolutionarily significant unit and tracing back wildcat introduction history of in Corsica. |
doi_str_mv | 10.1111/mec.16856 |
format | Article |
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Corsican wildcats are known by Corsican people since a very long time but have been little studied. Meaningful information about their phylogenetic position is lacking. We used ddRADseq to genotype phenotypically homogenous Corsican wildcats at 3671 genome‐wide SNPs and reported for the first time their genetic identity. We compared this genomic information to domestic cats Felis silvestris catus from Corsica and mainland France, European wildcats F. s. silvestris and Sardinian wildcats F. s. lybica. Our premise was that if the Corsican wildcat, as a phenotypic entity, also represents a genetic entity, it deserves conservation measures and to be recognized as a conservation unit. Corsican wildcats appeared highly genetically differentiated from European wildcats and genetically closer to Sardinian wildcats than to domestic cats. Domestic cats from Corsica and mainland France were closer to each other and Sardinian wildcats were intermediate between Corsican wildcats and domestic cats. This suggested that Corsican wildcats do not belong to the F. s. silvestris or catus lineages. The inclusion of more high‐quality Sardinian samples and Near‐Eastern mainland F. s. lybica would constitute the next step toward assessing the status of Corsican wildcat as a subspecies and/or evolutionarily significant unit and tracing back wildcat introduction history of in Corsica.</description><identifier>ISSN: 0962-1083</identifier><identifier>EISSN: 1365-294X</identifier><identifier>DOI: 10.1111/mec.16856</identifier><identifier>PMID: 36655989</identifier><language>eng</language><publisher>England: Blackwell Publishing Ltd</publisher><subject>Animals ; Cats ; Conservation ; conservation genetics ; Corsica ; Domestic animals ; double‐digest RAD sequencing ; Felis - genetics ; Felis reyi ; Felis silvestris ; Genomics ; Genotype ; Genotypes ; Life Sciences ; Metagenomics ; New subspecies ; Phylogeny ; population genomics ; Single-nucleotide polymorphism ; Species extinction ; Wildcats</subject><ispartof>Molecular ecology, 2023-04, Vol.32 (8), p.1908-1924</ispartof><rights>2023 John Wiley & Sons Ltd.</rights><rights>Copyright © 2023 John Wiley & Sons Ltd</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c3476-d02a78b38b3518b337bd6e0a26349f3ef82ff69af090444f0b0937e5d29684333</cites><orcidid>0000-0002-4186-875X ; 0000-0002-6566-6263 ; 0000-0001-6911-4362 ; 0000-0001-5183-0010 ; 0000-0001-9609-1952</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fmec.16856$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fmec.16856$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>230,314,780,784,885,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36655989$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.science/hal-04515234$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Portanier, Elodie</creatorcontrib><creatorcontrib>Henri, Hélène</creatorcontrib><creatorcontrib>Benedetti, Pierre</creatorcontrib><creatorcontrib>Sanchis, Frédéric</creatorcontrib><creatorcontrib>Régis, Corinne</creatorcontrib><creatorcontrib>Chevret, Pascale</creatorcontrib><creatorcontrib>Zedda, Marco</creatorcontrib><creatorcontrib>El Filali, Adil</creatorcontrib><creatorcontrib>Ruette, Sandrine</creatorcontrib><creatorcontrib>Devillard, Sébastien</creatorcontrib><title>Population genomics of Corsican wildcats: Paving the way toward a new subspecies within the Felis silvestris spp. complex?</title><title>Molecular ecology</title><addtitle>Mol Ecol</addtitle><description>In the context of the current extinction crisis, identifying new conservation units is pivotal to the development of sound conservation measures, especially in highly threatened taxa such as felids. Corsican wildcats are known by Corsican people since a very long time but have been little studied. Meaningful information about their phylogenetic position is lacking. We used ddRADseq to genotype phenotypically homogenous Corsican wildcats at 3671 genome‐wide SNPs and reported for the first time their genetic identity. We compared this genomic information to domestic cats Felis silvestris catus from Corsica and mainland France, European wildcats F. s. silvestris and Sardinian wildcats F. s. lybica. Our premise was that if the Corsican wildcat, as a phenotypic entity, also represents a genetic entity, it deserves conservation measures and to be recognized as a conservation unit. Corsican wildcats appeared highly genetically differentiated from European wildcats and genetically closer to Sardinian wildcats than to domestic cats. Domestic cats from Corsica and mainland France were closer to each other and Sardinian wildcats were intermediate between Corsican wildcats and domestic cats. This suggested that Corsican wildcats do not belong to the F. s. silvestris or catus lineages. The inclusion of more high‐quality Sardinian samples and Near‐Eastern mainland F. s. lybica would constitute the next step toward assessing the status of Corsican wildcat as a subspecies and/or evolutionarily significant unit and tracing back wildcat introduction history of in Corsica.</description><subject>Animals</subject><subject>Cats</subject><subject>Conservation</subject><subject>conservation genetics</subject><subject>Corsica</subject><subject>Domestic animals</subject><subject>double‐digest RAD sequencing</subject><subject>Felis - genetics</subject><subject>Felis reyi</subject><subject>Felis silvestris</subject><subject>Genomics</subject><subject>Genotype</subject><subject>Genotypes</subject><subject>Life Sciences</subject><subject>Metagenomics</subject><subject>New subspecies</subject><subject>Phylogeny</subject><subject>population genomics</subject><subject>Single-nucleotide polymorphism</subject><subject>Species extinction</subject><subject>Wildcats</subject><issn>0962-1083</issn><issn>1365-294X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kU9rFDEYh4Modq0e_AIS8KKH2eb_TLyUsrRWWLEHBW8hk0m6KZnJmMzsun56s91aRDCEJITn_eUNDwCvMVriMs56a5ZYNFw8AQtMBa-IZN-fggWSglQYNfQEvMj5DiFMCefPwQkVgnPZyAX4dRPHOejJxwHe2iH23mQYHVzFlL3RA9z50Bk95Q_wRm_9cAunjYU7vYdT3OnUQQ0Hu4N5bvNojbe5FEwbP9xjVzb4DLMPW5undDiO4xKa2I_B_jx_CZ45HbJ99bCfgm9Xl19X19X6y8dPq4t1ZSirRdUhouumpWVyXBZat52wSBNBmXTUuoY4J6R2SCLGmEMtkrS2vCNSNIxSegreH3M3Oqgx-V6nvYraq-uLtTrcIcYxJ5RtcWHfHdkxxR9z6Vr1Phsbgh5snLMitaixkDVmBX37D3oX5zSUnxRKNoLXEv31uEkx52TdYwcYqYM8VeSpe3mFffOQOLe97R7JP7YKcHYEihS7_3-S-ny5Okb-BpYYoms</recordid><startdate>202304</startdate><enddate>202304</enddate><creator>Portanier, Elodie</creator><creator>Henri, Hélène</creator><creator>Benedetti, Pierre</creator><creator>Sanchis, Frédéric</creator><creator>Régis, Corinne</creator><creator>Chevret, Pascale</creator><creator>Zedda, Marco</creator><creator>El Filali, Adil</creator><creator>Ruette, Sandrine</creator><creator>Devillard, Sébastien</creator><general>Blackwell Publishing Ltd</general><general>Wiley</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7SS</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>1XC</scope><orcidid>https://orcid.org/0000-0002-4186-875X</orcidid><orcidid>https://orcid.org/0000-0002-6566-6263</orcidid><orcidid>https://orcid.org/0000-0001-6911-4362</orcidid><orcidid>https://orcid.org/0000-0001-5183-0010</orcidid><orcidid>https://orcid.org/0000-0001-9609-1952</orcidid></search><sort><creationdate>202304</creationdate><title>Population genomics of Corsican wildcats: Paving the way toward a new subspecies within the Felis silvestris spp. complex?</title><author>Portanier, Elodie ; Henri, Hélène ; Benedetti, Pierre ; Sanchis, Frédéric ; Régis, Corinne ; Chevret, Pascale ; Zedda, Marco ; El Filali, Adil ; Ruette, Sandrine ; Devillard, Sébastien</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3476-d02a78b38b3518b337bd6e0a26349f3ef82ff69af090444f0b0937e5d29684333</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Animals</topic><topic>Cats</topic><topic>Conservation</topic><topic>conservation genetics</topic><topic>Corsica</topic><topic>Domestic animals</topic><topic>double‐digest RAD sequencing</topic><topic>Felis - genetics</topic><topic>Felis reyi</topic><topic>Felis silvestris</topic><topic>Genomics</topic><topic>Genotype</topic><topic>Genotypes</topic><topic>Life Sciences</topic><topic>Metagenomics</topic><topic>New subspecies</topic><topic>Phylogeny</topic><topic>population genomics</topic><topic>Single-nucleotide polymorphism</topic><topic>Species extinction</topic><topic>Wildcats</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Portanier, Elodie</creatorcontrib><creatorcontrib>Henri, Hélène</creatorcontrib><creatorcontrib>Benedetti, Pierre</creatorcontrib><creatorcontrib>Sanchis, Frédéric</creatorcontrib><creatorcontrib>Régis, Corinne</creatorcontrib><creatorcontrib>Chevret, Pascale</creatorcontrib><creatorcontrib>Zedda, Marco</creatorcontrib><creatorcontrib>El Filali, Adil</creatorcontrib><creatorcontrib>Ruette, Sandrine</creatorcontrib><creatorcontrib>Devillard, Sébastien</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>Molecular ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Portanier, Elodie</au><au>Henri, Hélène</au><au>Benedetti, Pierre</au><au>Sanchis, Frédéric</au><au>Régis, Corinne</au><au>Chevret, Pascale</au><au>Zedda, Marco</au><au>El Filali, Adil</au><au>Ruette, Sandrine</au><au>Devillard, Sébastien</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Population genomics of Corsican wildcats: Paving the way toward a new subspecies within the Felis silvestris spp. complex?</atitle><jtitle>Molecular ecology</jtitle><addtitle>Mol Ecol</addtitle><date>2023-04</date><risdate>2023</risdate><volume>32</volume><issue>8</issue><spage>1908</spage><epage>1924</epage><pages>1908-1924</pages><issn>0962-1083</issn><eissn>1365-294X</eissn><abstract>In the context of the current extinction crisis, identifying new conservation units is pivotal to the development of sound conservation measures, especially in highly threatened taxa such as felids. Corsican wildcats are known by Corsican people since a very long time but have been little studied. Meaningful information about their phylogenetic position is lacking. We used ddRADseq to genotype phenotypically homogenous Corsican wildcats at 3671 genome‐wide SNPs and reported for the first time their genetic identity. We compared this genomic information to domestic cats Felis silvestris catus from Corsica and mainland France, European wildcats F. s. silvestris and Sardinian wildcats F. s. lybica. Our premise was that if the Corsican wildcat, as a phenotypic entity, also represents a genetic entity, it deserves conservation measures and to be recognized as a conservation unit. Corsican wildcats appeared highly genetically differentiated from European wildcats and genetically closer to Sardinian wildcats than to domestic cats. Domestic cats from Corsica and mainland France were closer to each other and Sardinian wildcats were intermediate between Corsican wildcats and domestic cats. This suggested that Corsican wildcats do not belong to the F. s. silvestris or catus lineages. The inclusion of more high‐quality Sardinian samples and Near‐Eastern mainland F. s. lybica would constitute the next step toward assessing the status of Corsican wildcat as a subspecies and/or evolutionarily significant unit and tracing back wildcat introduction history of in Corsica.</abstract><cop>England</cop><pub>Blackwell Publishing Ltd</pub><pmid>36655989</pmid><doi>10.1111/mec.16856</doi><tpages>17</tpages><orcidid>https://orcid.org/0000-0002-4186-875X</orcidid><orcidid>https://orcid.org/0000-0002-6566-6263</orcidid><orcidid>https://orcid.org/0000-0001-6911-4362</orcidid><orcidid>https://orcid.org/0000-0001-5183-0010</orcidid><orcidid>https://orcid.org/0000-0001-9609-1952</orcidid></addata></record> |
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subjects | Animals Cats Conservation conservation genetics Corsica Domestic animals double‐digest RAD sequencing Felis - genetics Felis reyi Felis silvestris Genomics Genotype Genotypes Life Sciences Metagenomics New subspecies Phylogeny population genomics Single-nucleotide polymorphism Species extinction Wildcats |
title | Population genomics of Corsican wildcats: Paving the way toward a new subspecies within the Felis silvestris spp. complex? |
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