An online database for einkorn wheat to aid in gene discovery and functional genomics studies
Abstract Diploid A-genome wheat (einkorn wheat) presents a nutrition-rich option as an ancient grain crop and a resource for the improvement of bread wheat against abiotic and biotic stresses. Realizing the importance of this wheat species, reference-level assemblies of two einkorn wheat accessions...
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| Veröffentlicht in: | Database : the journal of biological databases and curation 2023-11, Vol.2023 |
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| creator | Sharma, Parva Kumar Ahmed, Hanin Ibrahim Heuberger, Matthias Koo, Dal-Hoe Quiroz-Chavez, Jesus Adhikari, Laxman Raupp, John Cauet, Stéphane Rodde, Nathalie Cravero, Charlotte Callot, Caroline Yadav, Inderjit Singh Kathiresan, Nagarajan Athiyannan, Naveenkumar Ramirez-Gonzalez, Ricardo H Uauy, Cristobal Wicker, Thomas Abrouk, Michael Gu, Yong Q Poland, Jesse Krattinger, Simon G Lazo, Gerard R Tiwari, Vijay K |
| description | Abstract
Diploid A-genome wheat (einkorn wheat) presents a nutrition-rich option as an ancient grain crop and a resource for the improvement of bread wheat against abiotic and biotic stresses. Realizing the importance of this wheat species, reference-level assemblies of two einkorn wheat accessions were generated (wild and domesticated). This work reports an einkorn genome database that provides an interface to the cereals research community to perform comparative genomics, applied genetics and breeding research. It features queries for annotated genes, the use of a recent genome browser release, and the ability to search for sequence alignments using a modern BLAST interface. Other features include a comparison of reference einkorn assemblies with other wheat cultivars through genomic synteny visualization and an alignment visualization tool for BLAST results. Altogether, this resource will help wheat research and breeding.
Database URL https://wheat.pw.usda.gov/GG3/pangenome |
| doi_str_mv | 10.1093/database/baad079 |
| format | Article |
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Diploid A-genome wheat (einkorn wheat) presents a nutrition-rich option as an ancient grain crop and a resource for the improvement of bread wheat against abiotic and biotic stresses. Realizing the importance of this wheat species, reference-level assemblies of two einkorn wheat accessions were generated (wild and domesticated). This work reports an einkorn genome database that provides an interface to the cereals research community to perform comparative genomics, applied genetics and breeding research. It features queries for annotated genes, the use of a recent genome browser release, and the ability to search for sequence alignments using a modern BLAST interface. Other features include a comparison of reference einkorn assemblies with other wheat cultivars through genomic synteny visualization and an alignment visualization tool for BLAST results. Altogether, this resource will help wheat research and breeding.
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Diploid A-genome wheat (einkorn wheat) presents a nutrition-rich option as an ancient grain crop and a resource for the improvement of bread wheat against abiotic and biotic stresses. Realizing the importance of this wheat species, reference-level assemblies of two einkorn wheat accessions were generated (wild and domesticated). This work reports an einkorn genome database that provides an interface to the cereals research community to perform comparative genomics, applied genetics and breeding research. It features queries for annotated genes, the use of a recent genome browser release, and the ability to search for sequence alignments using a modern BLAST interface. Other features include a comparison of reference einkorn assemblies with other wheat cultivars through genomic synteny visualization and an alignment visualization tool for BLAST results. Altogether, this resource will help wheat research and breeding.
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Diploid A-genome wheat (einkorn wheat) presents a nutrition-rich option as an ancient grain crop and a resource for the improvement of bread wheat against abiotic and biotic stresses. Realizing the importance of this wheat species, reference-level assemblies of two einkorn wheat accessions were generated (wild and domesticated). This work reports an einkorn genome database that provides an interface to the cereals research community to perform comparative genomics, applied genetics and breeding research. It features queries for annotated genes, the use of a recent genome browser release, and the ability to search for sequence alignments using a modern BLAST interface. Other features include a comparison of reference einkorn assemblies with other wheat cultivars through genomic synteny visualization and an alignment visualization tool for BLAST results. Altogether, this resource will help wheat research and breeding.
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| source | PubMed Central(OpenAccess); DOAJ Directory of Open Access Journals; Oxford University Press Open Access; EZB Electronic Journals Library |
| subjects | Biotechnology Computer Science Environmental Sciences Life Sciences Modeling and Simulation |
| title | An online database for einkorn wheat to aid in gene discovery and functional genomics studies |
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