Drivers for mutation in amino acid sequences of two mitochondrial proteins (Cytb and COI) in Phytoseiidae mites (Acari: Mesostigmata)
Mutations in amino acid sequences can affect protein function. Such aspects have been poorly studied for arthropods. As recent studies have shown mutations in cytochrome b (Cytb) associated with geographic locations in several Phytoseiidae species, the present study aims at investigating (i) the mut...
Gespeichert in:
Veröffentlicht in: | Experimental & applied acarology 2022-09, Vol.88 (1), p.1-40 |
---|---|
Hauptverfasser: | , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 40 |
---|---|
container_issue | 1 |
container_start_page | 1 |
container_title | Experimental & applied acarology |
container_volume | 88 |
creator | Tixier, Marie-Stéphane Tabary, Lou Douin, Martial |
description | Mutations in amino acid sequences can affect protein function. Such aspects have been poorly studied for arthropods. As recent studies have shown mutations in cytochrome b (Cytb) associated with geographic locations in several Phytoseiidae species, the present study aims at investigating (i) the mutation pattern in additional species for the Cytb fragment, (ii) the mutation pattern for another mitochondrial amino acid sequence, cytochrome c oxidase subunit 1 (COI), and (iii) factors affecting the mutations observed (taxonomy, plant support, climatic variables, wild vs. commercialised species). Mutations in amino acid sequences were assessed in seven Phytoseiidae species, with populations collected in contrasted environments. The DNA sequences were mainly obtained from published studies and some were newly obtained. Mutations were observed within and between the populations considered for both fragments, with higher mutation rates in Cytb than in COI sequences, confirming the robustness of this former fragment. Plant support and taxonomic position were not related to mutation patterns. A lower number of mutations was observed in commercialised populations than in wild ones. As preliminary tendencies, mutations in Cytb and COI sequences seem associated to temperature and moisture. Such a preliminary approach, attempting to relate mutation to functional adaptations, clearly opens new research tracks for better assessment of the drivers of mite adaptation, in a context of climate change. |
doi_str_mv | 10.1007/s10493-022-00741-8 |
format | Article |
fullrecord | <record><control><sourceid>proquest_hal_p</sourceid><recordid>TN_cdi_hal_primary_oai_HAL_hal_03963944v1</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2729027447</sourcerecordid><originalsourceid>FETCH-LOGICAL-c267t-2b8182261be764841851d69c0b6517ae67dbcae0b4666d0fc07c37876bc237c83</originalsourceid><addsrcrecordid>eNp9kcFu1DAURS0EokPhB1hZYjOzCDzbie2wGw2lrTSoLGBtOY7TcZXYxfYUzQfw33VIBRILVk9-OvfqXV-E3hJ4TwDEh0SgblkFlFblWZNKPkMr0ghatQLoc7QCwmUlCadn6FVKdwDQAG9eojPGqRSsYSv061N0DzYmPISIp2PW2QWPncd6cj5gbVyPk_1xtN7YhMOA88-AJ5eDOQTfR6dHfB9Dts4nvN6dcoe17_Hu5nozm3w9nHJI1rle21lVLNZbo6P7iL_YFFJ2t5POevMavRj0mOybp3mOvn---La7qvY3l9e77b4ylItc0U4SSSknnRW8ljWRDel5a6DjDRHactF3Rlvoas55D4MBYZiQgneGMmEkO0ebxfegR3Uf3aTjSQXt1NV2r-YdsJaztq4fSGHXC1vylfwpq8klY8dRexuOSVFBW6CirkVB3_2D3oVj9CVJoRgvf962M0UXysSQUrTDnwsIqLlQtRSqSqHqd6FqvpgtolRgf2vjX-v_qB4BLBGgCA</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2736065997</pqid></control><display><type>article</type><title>Drivers for mutation in amino acid sequences of two mitochondrial proteins (Cytb and COI) in Phytoseiidae mites (Acari: Mesostigmata)</title><source>SpringerLink Journals - AutoHoldings</source><creator>Tixier, Marie-Stéphane ; Tabary, Lou ; Douin, Martial</creator><creatorcontrib>Tixier, Marie-Stéphane ; Tabary, Lou ; Douin, Martial</creatorcontrib><description>Mutations in amino acid sequences can affect protein function. Such aspects have been poorly studied for arthropods. As recent studies have shown mutations in cytochrome b (Cytb) associated with geographic locations in several Phytoseiidae species, the present study aims at investigating (i) the mutation pattern in additional species for the Cytb fragment, (ii) the mutation pattern for another mitochondrial amino acid sequence, cytochrome c oxidase subunit 1 (COI), and (iii) factors affecting the mutations observed (taxonomy, plant support, climatic variables, wild vs. commercialised species). Mutations in amino acid sequences were assessed in seven Phytoseiidae species, with populations collected in contrasted environments. The DNA sequences were mainly obtained from published studies and some were newly obtained. Mutations were observed within and between the populations considered for both fragments, with higher mutation rates in Cytb than in COI sequences, confirming the robustness of this former fragment. Plant support and taxonomic position were not related to mutation patterns. A lower number of mutations was observed in commercialised populations than in wild ones. As preliminary tendencies, mutations in Cytb and COI sequences seem associated to temperature and moisture. Such a preliminary approach, attempting to relate mutation to functional adaptations, clearly opens new research tracks for better assessment of the drivers of mite adaptation, in a context of climate change.</description><identifier>ISSN: 0168-8162</identifier><identifier>EISSN: 1572-9702</identifier><identifier>DOI: 10.1007/s10493-022-00741-8</identifier><identifier>PMID: 36287353</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Adaptation ; Amino acid sequence ; Amino acids ; Animal Ecology ; Animal Genetics and Genomics ; Animal Systematics/Taxonomy/Biogeography ; Arthropods ; Biomedical and Life Sciences ; Climate change ; Commercialization ; Cytochrome ; Cytochrome b ; Cytochrome-c oxidase ; Cytochromes ; Entomology ; Gene sequencing ; Geographical locations ; Life Sciences ; Mites ; Mitochondria ; Moisture effects ; Mutation ; Mutation rates ; Nucleotide sequence ; Phytoseiidae ; Populations ; Proteins ; Taxonomy</subject><ispartof>Experimental & applied acarology, 2022-09, Vol.88 (1), p.1-40</ispartof><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2022. Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c267t-2b8182261be764841851d69c0b6517ae67dbcae0b4666d0fc07c37876bc237c83</cites><orcidid>0000-0001-5206-7360</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10493-022-00741-8$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10493-022-00741-8$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>230,314,780,784,885,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://hal.inrae.fr/hal-03963944$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Tixier, Marie-Stéphane</creatorcontrib><creatorcontrib>Tabary, Lou</creatorcontrib><creatorcontrib>Douin, Martial</creatorcontrib><title>Drivers for mutation in amino acid sequences of two mitochondrial proteins (Cytb and COI) in Phytoseiidae mites (Acari: Mesostigmata)</title><title>Experimental & applied acarology</title><addtitle>Exp Appl Acarol</addtitle><description>Mutations in amino acid sequences can affect protein function. Such aspects have been poorly studied for arthropods. As recent studies have shown mutations in cytochrome b (Cytb) associated with geographic locations in several Phytoseiidae species, the present study aims at investigating (i) the mutation pattern in additional species for the Cytb fragment, (ii) the mutation pattern for another mitochondrial amino acid sequence, cytochrome c oxidase subunit 1 (COI), and (iii) factors affecting the mutations observed (taxonomy, plant support, climatic variables, wild vs. commercialised species). Mutations in amino acid sequences were assessed in seven Phytoseiidae species, with populations collected in contrasted environments. The DNA sequences were mainly obtained from published studies and some were newly obtained. Mutations were observed within and between the populations considered for both fragments, with higher mutation rates in Cytb than in COI sequences, confirming the robustness of this former fragment. Plant support and taxonomic position were not related to mutation patterns. A lower number of mutations was observed in commercialised populations than in wild ones. As preliminary tendencies, mutations in Cytb and COI sequences seem associated to temperature and moisture. Such a preliminary approach, attempting to relate mutation to functional adaptations, clearly opens new research tracks for better assessment of the drivers of mite adaptation, in a context of climate change.</description><subject>Adaptation</subject><subject>Amino acid sequence</subject><subject>Amino acids</subject><subject>Animal Ecology</subject><subject>Animal Genetics and Genomics</subject><subject>Animal Systematics/Taxonomy/Biogeography</subject><subject>Arthropods</subject><subject>Biomedical and Life Sciences</subject><subject>Climate change</subject><subject>Commercialization</subject><subject>Cytochrome</subject><subject>Cytochrome b</subject><subject>Cytochrome-c oxidase</subject><subject>Cytochromes</subject><subject>Entomology</subject><subject>Gene sequencing</subject><subject>Geographical locations</subject><subject>Life Sciences</subject><subject>Mites</subject><subject>Mitochondria</subject><subject>Moisture effects</subject><subject>Mutation</subject><subject>Mutation rates</subject><subject>Nucleotide sequence</subject><subject>Phytoseiidae</subject><subject>Populations</subject><subject>Proteins</subject><subject>Taxonomy</subject><issn>0168-8162</issn><issn>1572-9702</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kcFu1DAURS0EokPhB1hZYjOzCDzbie2wGw2lrTSoLGBtOY7TcZXYxfYUzQfw33VIBRILVk9-OvfqXV-E3hJ4TwDEh0SgblkFlFblWZNKPkMr0ghatQLoc7QCwmUlCadn6FVKdwDQAG9eojPGqRSsYSv061N0DzYmPISIp2PW2QWPncd6cj5gbVyPk_1xtN7YhMOA88-AJ5eDOQTfR6dHfB9Dts4nvN6dcoe17_Hu5nozm3w9nHJI1rle21lVLNZbo6P7iL_YFFJ2t5POevMavRj0mOybp3mOvn---La7qvY3l9e77b4ylItc0U4SSSknnRW8ljWRDel5a6DjDRHactF3Rlvoas55D4MBYZiQgneGMmEkO0ebxfegR3Uf3aTjSQXt1NV2r-YdsJaztq4fSGHXC1vylfwpq8klY8dRexuOSVFBW6CirkVB3_2D3oVj9CVJoRgvf962M0UXysSQUrTDnwsIqLlQtRSqSqHqd6FqvpgtolRgf2vjX-v_qB4BLBGgCA</recordid><startdate>20220901</startdate><enddate>20220901</enddate><creator>Tixier, Marie-Stéphane</creator><creator>Tabary, Lou</creator><creator>Douin, Martial</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><general>Springer Verlag</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7SS</scope><scope>7T7</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AF</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>1XC</scope><orcidid>https://orcid.org/0000-0001-5206-7360</orcidid></search><sort><creationdate>20220901</creationdate><title>Drivers for mutation in amino acid sequences of two mitochondrial proteins (Cytb and COI) in Phytoseiidae mites (Acari: Mesostigmata)</title><author>Tixier, Marie-Stéphane ; Tabary, Lou ; Douin, Martial</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c267t-2b8182261be764841851d69c0b6517ae67dbcae0b4666d0fc07c37876bc237c83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Adaptation</topic><topic>Amino acid sequence</topic><topic>Amino acids</topic><topic>Animal Ecology</topic><topic>Animal Genetics and Genomics</topic><topic>Animal Systematics/Taxonomy/Biogeography</topic><topic>Arthropods</topic><topic>Biomedical and Life Sciences</topic><topic>Climate change</topic><topic>Commercialization</topic><topic>Cytochrome</topic><topic>Cytochrome b</topic><topic>Cytochrome-c oxidase</topic><topic>Cytochromes</topic><topic>Entomology</topic><topic>Gene sequencing</topic><topic>Geographical locations</topic><topic>Life Sciences</topic><topic>Mites</topic><topic>Mitochondria</topic><topic>Moisture effects</topic><topic>Mutation</topic><topic>Mutation rates</topic><topic>Nucleotide sequence</topic><topic>Phytoseiidae</topic><topic>Populations</topic><topic>Proteins</topic><topic>Taxonomy</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tixier, Marie-Stéphane</creatorcontrib><creatorcontrib>Tabary, Lou</creatorcontrib><creatorcontrib>Douin, Martial</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>STEM Database</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>Experimental & applied acarology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tixier, Marie-Stéphane</au><au>Tabary, Lou</au><au>Douin, Martial</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Drivers for mutation in amino acid sequences of two mitochondrial proteins (Cytb and COI) in Phytoseiidae mites (Acari: Mesostigmata)</atitle><jtitle>Experimental & applied acarology</jtitle><stitle>Exp Appl Acarol</stitle><date>2022-09-01</date><risdate>2022</risdate><volume>88</volume><issue>1</issue><spage>1</spage><epage>40</epage><pages>1-40</pages><issn>0168-8162</issn><eissn>1572-9702</eissn><abstract>Mutations in amino acid sequences can affect protein function. Such aspects have been poorly studied for arthropods. As recent studies have shown mutations in cytochrome b (Cytb) associated with geographic locations in several Phytoseiidae species, the present study aims at investigating (i) the mutation pattern in additional species for the Cytb fragment, (ii) the mutation pattern for another mitochondrial amino acid sequence, cytochrome c oxidase subunit 1 (COI), and (iii) factors affecting the mutations observed (taxonomy, plant support, climatic variables, wild vs. commercialised species). Mutations in amino acid sequences were assessed in seven Phytoseiidae species, with populations collected in contrasted environments. The DNA sequences were mainly obtained from published studies and some were newly obtained. Mutations were observed within and between the populations considered for both fragments, with higher mutation rates in Cytb than in COI sequences, confirming the robustness of this former fragment. Plant support and taxonomic position were not related to mutation patterns. A lower number of mutations was observed in commercialised populations than in wild ones. As preliminary tendencies, mutations in Cytb and COI sequences seem associated to temperature and moisture. Such a preliminary approach, attempting to relate mutation to functional adaptations, clearly opens new research tracks for better assessment of the drivers of mite adaptation, in a context of climate change.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>36287353</pmid><doi>10.1007/s10493-022-00741-8</doi><tpages>40</tpages><orcidid>https://orcid.org/0000-0001-5206-7360</orcidid></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0168-8162 |
ispartof | Experimental & applied acarology, 2022-09, Vol.88 (1), p.1-40 |
issn | 0168-8162 1572-9702 |
language | eng |
recordid | cdi_hal_primary_oai_HAL_hal_03963944v1 |
source | SpringerLink Journals - AutoHoldings |
subjects | Adaptation Amino acid sequence Amino acids Animal Ecology Animal Genetics and Genomics Animal Systematics/Taxonomy/Biogeography Arthropods Biomedical and Life Sciences Climate change Commercialization Cytochrome Cytochrome b Cytochrome-c oxidase Cytochromes Entomology Gene sequencing Geographical locations Life Sciences Mites Mitochondria Moisture effects Mutation Mutation rates Nucleotide sequence Phytoseiidae Populations Proteins Taxonomy |
title | Drivers for mutation in amino acid sequences of two mitochondrial proteins (Cytb and COI) in Phytoseiidae mites (Acari: Mesostigmata) |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-05T21%3A41%3A30IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_hal_p&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Drivers%20for%20mutation%20in%20amino%20acid%20sequences%20of%20two%20mitochondrial%20proteins%20(Cytb%20and%20COI)%20in%20Phytoseiidae%20mites%20(Acari:%20Mesostigmata)&rft.jtitle=Experimental%20&%20applied%20acarology&rft.au=Tixier,%20Marie-St%C3%A9phane&rft.date=2022-09-01&rft.volume=88&rft.issue=1&rft.spage=1&rft.epage=40&rft.pages=1-40&rft.issn=0168-8162&rft.eissn=1572-9702&rft_id=info:doi/10.1007/s10493-022-00741-8&rft_dat=%3Cproquest_hal_p%3E2729027447%3C/proquest_hal_p%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2736065997&rft_id=info:pmid/36287353&rfr_iscdi=true |