Drivers for mutation in amino acid sequences of two mitochondrial proteins (Cytb and COI) in Phytoseiidae mites (Acari: Mesostigmata)

Mutations in amino acid sequences can affect protein function. Such aspects have been poorly studied for arthropods. As recent studies have shown mutations in cytochrome b (Cytb) associated with geographic locations in several Phytoseiidae species, the present study aims at investigating (i) the mut...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Experimental & applied acarology 2022-09, Vol.88 (1), p.1-40
Hauptverfasser: Tixier, Marie-Stéphane, Tabary, Lou, Douin, Martial
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 40
container_issue 1
container_start_page 1
container_title Experimental & applied acarology
container_volume 88
creator Tixier, Marie-Stéphane
Tabary, Lou
Douin, Martial
description Mutations in amino acid sequences can affect protein function. Such aspects have been poorly studied for arthropods. As recent studies have shown mutations in cytochrome b (Cytb) associated with geographic locations in several Phytoseiidae species, the present study aims at investigating (i) the mutation pattern in additional species for the Cytb fragment, (ii) the mutation pattern for another mitochondrial amino acid sequence, cytochrome c oxidase subunit 1 (COI), and (iii) factors affecting the mutations observed (taxonomy, plant support, climatic variables, wild vs. commercialised species). Mutations in amino acid sequences were assessed in seven Phytoseiidae species, with populations collected in contrasted environments. The DNA sequences were mainly obtained from published studies and some were newly obtained. Mutations were observed within and between the populations considered for both fragments, with higher mutation rates in Cytb than in COI sequences, confirming the robustness of this former fragment. Plant support and taxonomic position were not related to mutation patterns. A lower number of mutations was observed in commercialised populations than in wild ones. As preliminary tendencies, mutations in Cytb and COI sequences seem associated to temperature and moisture. Such a preliminary approach, attempting to relate mutation to functional adaptations, clearly opens new research tracks for better assessment of the drivers of mite adaptation, in a context of climate change.
doi_str_mv 10.1007/s10493-022-00741-8
format Article
fullrecord <record><control><sourceid>proquest_hal_p</sourceid><recordid>TN_cdi_hal_primary_oai_HAL_hal_03963944v1</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2729027447</sourcerecordid><originalsourceid>FETCH-LOGICAL-c267t-2b8182261be764841851d69c0b6517ae67dbcae0b4666d0fc07c37876bc237c83</originalsourceid><addsrcrecordid>eNp9kcFu1DAURS0EokPhB1hZYjOzCDzbie2wGw2lrTSoLGBtOY7TcZXYxfYUzQfw33VIBRILVk9-OvfqXV-E3hJ4TwDEh0SgblkFlFblWZNKPkMr0ghatQLoc7QCwmUlCadn6FVKdwDQAG9eojPGqRSsYSv061N0DzYmPISIp2PW2QWPncd6cj5gbVyPk_1xtN7YhMOA88-AJ5eDOQTfR6dHfB9Dts4nvN6dcoe17_Hu5nozm3w9nHJI1rle21lVLNZbo6P7iL_YFFJ2t5POevMavRj0mOybp3mOvn---La7qvY3l9e77b4ylItc0U4SSSknnRW8ljWRDel5a6DjDRHactF3Rlvoas55D4MBYZiQgneGMmEkO0ebxfegR3Uf3aTjSQXt1NV2r-YdsJaztq4fSGHXC1vylfwpq8klY8dRexuOSVFBW6CirkVB3_2D3oVj9CVJoRgvf962M0UXysSQUrTDnwsIqLlQtRSqSqHqd6FqvpgtolRgf2vjX-v_qB4BLBGgCA</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2736065997</pqid></control><display><type>article</type><title>Drivers for mutation in amino acid sequences of two mitochondrial proteins (Cytb and COI) in Phytoseiidae mites (Acari: Mesostigmata)</title><source>SpringerLink Journals - AutoHoldings</source><creator>Tixier, Marie-Stéphane ; Tabary, Lou ; Douin, Martial</creator><creatorcontrib>Tixier, Marie-Stéphane ; Tabary, Lou ; Douin, Martial</creatorcontrib><description>Mutations in amino acid sequences can affect protein function. Such aspects have been poorly studied for arthropods. As recent studies have shown mutations in cytochrome b (Cytb) associated with geographic locations in several Phytoseiidae species, the present study aims at investigating (i) the mutation pattern in additional species for the Cytb fragment, (ii) the mutation pattern for another mitochondrial amino acid sequence, cytochrome c oxidase subunit 1 (COI), and (iii) factors affecting the mutations observed (taxonomy, plant support, climatic variables, wild vs. commercialised species). Mutations in amino acid sequences were assessed in seven Phytoseiidae species, with populations collected in contrasted environments. The DNA sequences were mainly obtained from published studies and some were newly obtained. Mutations were observed within and between the populations considered for both fragments, with higher mutation rates in Cytb than in COI sequences, confirming the robustness of this former fragment. Plant support and taxonomic position were not related to mutation patterns. A lower number of mutations was observed in commercialised populations than in wild ones. As preliminary tendencies, mutations in Cytb and COI sequences seem associated to temperature and moisture. Such a preliminary approach, attempting to relate mutation to functional adaptations, clearly opens new research tracks for better assessment of the drivers of mite adaptation, in a context of climate change.</description><identifier>ISSN: 0168-8162</identifier><identifier>EISSN: 1572-9702</identifier><identifier>DOI: 10.1007/s10493-022-00741-8</identifier><identifier>PMID: 36287353</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Adaptation ; Amino acid sequence ; Amino acids ; Animal Ecology ; Animal Genetics and Genomics ; Animal Systematics/Taxonomy/Biogeography ; Arthropods ; Biomedical and Life Sciences ; Climate change ; Commercialization ; Cytochrome ; Cytochrome b ; Cytochrome-c oxidase ; Cytochromes ; Entomology ; Gene sequencing ; Geographical locations ; Life Sciences ; Mites ; Mitochondria ; Moisture effects ; Mutation ; Mutation rates ; Nucleotide sequence ; Phytoseiidae ; Populations ; Proteins ; Taxonomy</subject><ispartof>Experimental &amp; applied acarology, 2022-09, Vol.88 (1), p.1-40</ispartof><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2022. Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c267t-2b8182261be764841851d69c0b6517ae67dbcae0b4666d0fc07c37876bc237c83</cites><orcidid>0000-0001-5206-7360</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10493-022-00741-8$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10493-022-00741-8$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>230,314,780,784,885,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://hal.inrae.fr/hal-03963944$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Tixier, Marie-Stéphane</creatorcontrib><creatorcontrib>Tabary, Lou</creatorcontrib><creatorcontrib>Douin, Martial</creatorcontrib><title>Drivers for mutation in amino acid sequences of two mitochondrial proteins (Cytb and COI) in Phytoseiidae mites (Acari: Mesostigmata)</title><title>Experimental &amp; applied acarology</title><addtitle>Exp Appl Acarol</addtitle><description>Mutations in amino acid sequences can affect protein function. Such aspects have been poorly studied for arthropods. As recent studies have shown mutations in cytochrome b (Cytb) associated with geographic locations in several Phytoseiidae species, the present study aims at investigating (i) the mutation pattern in additional species for the Cytb fragment, (ii) the mutation pattern for another mitochondrial amino acid sequence, cytochrome c oxidase subunit 1 (COI), and (iii) factors affecting the mutations observed (taxonomy, plant support, climatic variables, wild vs. commercialised species). Mutations in amino acid sequences were assessed in seven Phytoseiidae species, with populations collected in contrasted environments. The DNA sequences were mainly obtained from published studies and some were newly obtained. Mutations were observed within and between the populations considered for both fragments, with higher mutation rates in Cytb than in COI sequences, confirming the robustness of this former fragment. Plant support and taxonomic position were not related to mutation patterns. A lower number of mutations was observed in commercialised populations than in wild ones. As preliminary tendencies, mutations in Cytb and COI sequences seem associated to temperature and moisture. Such a preliminary approach, attempting to relate mutation to functional adaptations, clearly opens new research tracks for better assessment of the drivers of mite adaptation, in a context of climate change.</description><subject>Adaptation</subject><subject>Amino acid sequence</subject><subject>Amino acids</subject><subject>Animal Ecology</subject><subject>Animal Genetics and Genomics</subject><subject>Animal Systematics/Taxonomy/Biogeography</subject><subject>Arthropods</subject><subject>Biomedical and Life Sciences</subject><subject>Climate change</subject><subject>Commercialization</subject><subject>Cytochrome</subject><subject>Cytochrome b</subject><subject>Cytochrome-c oxidase</subject><subject>Cytochromes</subject><subject>Entomology</subject><subject>Gene sequencing</subject><subject>Geographical locations</subject><subject>Life Sciences</subject><subject>Mites</subject><subject>Mitochondria</subject><subject>Moisture effects</subject><subject>Mutation</subject><subject>Mutation rates</subject><subject>Nucleotide sequence</subject><subject>Phytoseiidae</subject><subject>Populations</subject><subject>Proteins</subject><subject>Taxonomy</subject><issn>0168-8162</issn><issn>1572-9702</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kcFu1DAURS0EokPhB1hZYjOzCDzbie2wGw2lrTSoLGBtOY7TcZXYxfYUzQfw33VIBRILVk9-OvfqXV-E3hJ4TwDEh0SgblkFlFblWZNKPkMr0ghatQLoc7QCwmUlCadn6FVKdwDQAG9eojPGqRSsYSv061N0DzYmPISIp2PW2QWPncd6cj5gbVyPk_1xtN7YhMOA88-AJ5eDOQTfR6dHfB9Dts4nvN6dcoe17_Hu5nozm3w9nHJI1rle21lVLNZbo6P7iL_YFFJ2t5POevMavRj0mOybp3mOvn---La7qvY3l9e77b4ylItc0U4SSSknnRW8ljWRDel5a6DjDRHactF3Rlvoas55D4MBYZiQgneGMmEkO0ebxfegR3Uf3aTjSQXt1NV2r-YdsJaztq4fSGHXC1vylfwpq8klY8dRexuOSVFBW6CirkVB3_2D3oVj9CVJoRgvf962M0UXysSQUrTDnwsIqLlQtRSqSqHqd6FqvpgtolRgf2vjX-v_qB4BLBGgCA</recordid><startdate>20220901</startdate><enddate>20220901</enddate><creator>Tixier, Marie-Stéphane</creator><creator>Tabary, Lou</creator><creator>Douin, Martial</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><general>Springer Verlag</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7SS</scope><scope>7T7</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AF</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>1XC</scope><orcidid>https://orcid.org/0000-0001-5206-7360</orcidid></search><sort><creationdate>20220901</creationdate><title>Drivers for mutation in amino acid sequences of two mitochondrial proteins (Cytb and COI) in Phytoseiidae mites (Acari: Mesostigmata)</title><author>Tixier, Marie-Stéphane ; Tabary, Lou ; Douin, Martial</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c267t-2b8182261be764841851d69c0b6517ae67dbcae0b4666d0fc07c37876bc237c83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Adaptation</topic><topic>Amino acid sequence</topic><topic>Amino acids</topic><topic>Animal Ecology</topic><topic>Animal Genetics and Genomics</topic><topic>Animal Systematics/Taxonomy/Biogeography</topic><topic>Arthropods</topic><topic>Biomedical and Life Sciences</topic><topic>Climate change</topic><topic>Commercialization</topic><topic>Cytochrome</topic><topic>Cytochrome b</topic><topic>Cytochrome-c oxidase</topic><topic>Cytochromes</topic><topic>Entomology</topic><topic>Gene sequencing</topic><topic>Geographical locations</topic><topic>Life Sciences</topic><topic>Mites</topic><topic>Mitochondria</topic><topic>Moisture effects</topic><topic>Mutation</topic><topic>Mutation rates</topic><topic>Nucleotide sequence</topic><topic>Phytoseiidae</topic><topic>Populations</topic><topic>Proteins</topic><topic>Taxonomy</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tixier, Marie-Stéphane</creatorcontrib><creatorcontrib>Tabary, Lou</creatorcontrib><creatorcontrib>Douin, Martial</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>Health &amp; Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>STEM Database</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural &amp; Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>Experimental &amp; applied acarology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tixier, Marie-Stéphane</au><au>Tabary, Lou</au><au>Douin, Martial</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Drivers for mutation in amino acid sequences of two mitochondrial proteins (Cytb and COI) in Phytoseiidae mites (Acari: Mesostigmata)</atitle><jtitle>Experimental &amp; applied acarology</jtitle><stitle>Exp Appl Acarol</stitle><date>2022-09-01</date><risdate>2022</risdate><volume>88</volume><issue>1</issue><spage>1</spage><epage>40</epage><pages>1-40</pages><issn>0168-8162</issn><eissn>1572-9702</eissn><abstract>Mutations in amino acid sequences can affect protein function. Such aspects have been poorly studied for arthropods. As recent studies have shown mutations in cytochrome b (Cytb) associated with geographic locations in several Phytoseiidae species, the present study aims at investigating (i) the mutation pattern in additional species for the Cytb fragment, (ii) the mutation pattern for another mitochondrial amino acid sequence, cytochrome c oxidase subunit 1 (COI), and (iii) factors affecting the mutations observed (taxonomy, plant support, climatic variables, wild vs. commercialised species). Mutations in amino acid sequences were assessed in seven Phytoseiidae species, with populations collected in contrasted environments. The DNA sequences were mainly obtained from published studies and some were newly obtained. Mutations were observed within and between the populations considered for both fragments, with higher mutation rates in Cytb than in COI sequences, confirming the robustness of this former fragment. Plant support and taxonomic position were not related to mutation patterns. A lower number of mutations was observed in commercialised populations than in wild ones. As preliminary tendencies, mutations in Cytb and COI sequences seem associated to temperature and moisture. Such a preliminary approach, attempting to relate mutation to functional adaptations, clearly opens new research tracks for better assessment of the drivers of mite adaptation, in a context of climate change.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>36287353</pmid><doi>10.1007/s10493-022-00741-8</doi><tpages>40</tpages><orcidid>https://orcid.org/0000-0001-5206-7360</orcidid></addata></record>
fulltext fulltext
identifier ISSN: 0168-8162
ispartof Experimental & applied acarology, 2022-09, Vol.88 (1), p.1-40
issn 0168-8162
1572-9702
language eng
recordid cdi_hal_primary_oai_HAL_hal_03963944v1
source SpringerLink Journals - AutoHoldings
subjects Adaptation
Amino acid sequence
Amino acids
Animal Ecology
Animal Genetics and Genomics
Animal Systematics/Taxonomy/Biogeography
Arthropods
Biomedical and Life Sciences
Climate change
Commercialization
Cytochrome
Cytochrome b
Cytochrome-c oxidase
Cytochromes
Entomology
Gene sequencing
Geographical locations
Life Sciences
Mites
Mitochondria
Moisture effects
Mutation
Mutation rates
Nucleotide sequence
Phytoseiidae
Populations
Proteins
Taxonomy
title Drivers for mutation in amino acid sequences of two mitochondrial proteins (Cytb and COI) in Phytoseiidae mites (Acari: Mesostigmata)
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-05T21%3A41%3A30IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_hal_p&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Drivers%20for%20mutation%20in%20amino%20acid%20sequences%20of%20two%20mitochondrial%20proteins%20(Cytb%20and%20COI)%20in%20Phytoseiidae%20mites%20(Acari:%20Mesostigmata)&rft.jtitle=Experimental%20&%20applied%20acarology&rft.au=Tixier,%20Marie-St%C3%A9phane&rft.date=2022-09-01&rft.volume=88&rft.issue=1&rft.spage=1&rft.epage=40&rft.pages=1-40&rft.issn=0168-8162&rft.eissn=1572-9702&rft_id=info:doi/10.1007/s10493-022-00741-8&rft_dat=%3Cproquest_hal_p%3E2729027447%3C/proquest_hal_p%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2736065997&rft_id=info:pmid/36287353&rfr_iscdi=true