OH oxidation of methionine in the presence of discrete water molecules: DFT, QTAIM and valence bond analyses
The first steps of the oxidation process of amino acid methionine (Met, CAS 63-68-3 ) by • OH radicals, leading to Met-OH • adduct and then to Met radical cation, were investigated theoretically over the last few years considering the aqueous environment as a continuum. In this work, following the s...
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creator | Bergès, Jacqueline Domin, Dominik Pilmé, Julien Braïda, Benoît Houée-Levin, Chantal |
description | The first steps of the oxidation process of amino acid methionine (Met, CAS
63-68-3
) by
•
OH radicals, leading to Met-OH
•
adduct and then to Met radical cation, were investigated theoretically over the last few years considering the aqueous environment as a continuum. In this work, following the same procedure that we used for the oxidation of dimethyl sulfide as reported by Domin et al. (J Phys Chem B, 121:9321), discrete water molecules, as well as relative positions, of the
•
OH radical to Met were taken from molecular dynamics calculations. The presence of water molecules strongly modifies the relative energies of Met-OH adducts and cations when water is properly modeled. Depending on the terminal functional groups and on the position of the
•
OH radical, several stable structures were found; however, the most stable radical is the N-centered or the S∴N radical cation. QTAIM analysis and valence bond (VB) treatment allowed for the characterization of the 2c∴3e nature of S∴N and S∴OH bonds. VB analysis estimated the probability of the heterolytic rupture of the
•
OH adduct that is modified by the presence of water molecules.
Graphical abstract
Oxidation of amino acid methionine by
•
OH radicals in the presence of discrete water molecules. |
doi_str_mv | 10.1007/s11224-019-01438-2 |
format | Article |
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63-68-3
) by
•
OH radicals, leading to Met-OH
•
adduct and then to Met radical cation, were investigated theoretically over the last few years considering the aqueous environment as a continuum. In this work, following the same procedure that we used for the oxidation of dimethyl sulfide as reported by Domin et al. (J Phys Chem B, 121:9321), discrete water molecules, as well as relative positions, of the
•
OH radical to Met were taken from molecular dynamics calculations. The presence of water molecules strongly modifies the relative energies of Met-OH adducts and cations when water is properly modeled. Depending on the terminal functional groups and on the position of the
•
OH radical, several stable structures were found; however, the most stable radical is the N-centered or the S∴N radical cation. QTAIM analysis and valence bond (VB) treatment allowed for the characterization of the 2c∴3e nature of S∴N and S∴OH bonds. VB analysis estimated the probability of the heterolytic rupture of the
•
OH adduct that is modified by the presence of water molecules.
Graphical abstract
Oxidation of amino acid methionine by
•
OH radicals in the presence of discrete water molecules.</description><identifier>ISSN: 1040-0400</identifier><identifier>EISSN: 1572-9001</identifier><identifier>DOI: 10.1007/s11224-019-01438-2</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Adducts ; Aqueous environments ; Cations ; Chemical Sciences ; Chemistry ; Chemistry and Materials Science ; Computer Applications in Chemistry ; Density functional theory ; Dimethyl sulfide ; Functional groups ; Methionine ; Molecular dynamics ; Original Research ; Oxidation ; Physical Chemistry ; Theoretical and Computational Chemistry ; Water chemistry</subject><ispartof>Structural chemistry, 2020-04, Vol.31 (2), p.719-730</ispartof><rights>Springer Science+Business Media, LLC, part of Springer Nature 2019</rights><rights>2019© Springer Science+Business Media, LLC, part of Springer Nature 2019</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c397t-29d4b9687c4fec75a605f2808dd8f6c03700dc31271a9d82b47c55e87d0fc9613</citedby><cites>FETCH-LOGICAL-c397t-29d4b9687c4fec75a605f2808dd8f6c03700dc31271a9d82b47c55e87d0fc9613</cites><orcidid>0000-0003-3725-3215 ; 0000-0003-0421-4930</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11224-019-01438-2$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11224-019-01438-2$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>230,314,776,780,881,27903,27904,41467,42536,51298</link.rule.ids><backlink>$$Uhttps://hal.sorbonne-universite.fr/hal-03956671$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Bergès, Jacqueline</creatorcontrib><creatorcontrib>Domin, Dominik</creatorcontrib><creatorcontrib>Pilmé, Julien</creatorcontrib><creatorcontrib>Braïda, Benoît</creatorcontrib><creatorcontrib>Houée-Levin, Chantal</creatorcontrib><title>OH oxidation of methionine in the presence of discrete water molecules: DFT, QTAIM and valence bond analyses</title><title>Structural chemistry</title><addtitle>Struct Chem</addtitle><description>The first steps of the oxidation process of amino acid methionine (Met, CAS
63-68-3
) by
•
OH radicals, leading to Met-OH
•
adduct and then to Met radical cation, were investigated theoretically over the last few years considering the aqueous environment as a continuum. In this work, following the same procedure that we used for the oxidation of dimethyl sulfide as reported by Domin et al. (J Phys Chem B, 121:9321), discrete water molecules, as well as relative positions, of the
•
OH radical to Met were taken from molecular dynamics calculations. The presence of water molecules strongly modifies the relative energies of Met-OH adducts and cations when water is properly modeled. Depending on the terminal functional groups and on the position of the
•
OH radical, several stable structures were found; however, the most stable radical is the N-centered or the S∴N radical cation. QTAIM analysis and valence bond (VB) treatment allowed for the characterization of the 2c∴3e nature of S∴N and S∴OH bonds. VB analysis estimated the probability of the heterolytic rupture of the
•
OH adduct that is modified by the presence of water molecules.
Graphical abstract
Oxidation of amino acid methionine by
•
OH radicals in the presence of discrete water molecules.</description><subject>Adducts</subject><subject>Aqueous environments</subject><subject>Cations</subject><subject>Chemical Sciences</subject><subject>Chemistry</subject><subject>Chemistry and Materials Science</subject><subject>Computer Applications in Chemistry</subject><subject>Density functional theory</subject><subject>Dimethyl sulfide</subject><subject>Functional groups</subject><subject>Methionine</subject><subject>Molecular dynamics</subject><subject>Original Research</subject><subject>Oxidation</subject><subject>Physical Chemistry</subject><subject>Theoretical and Computational Chemistry</subject><subject>Water chemistry</subject><issn>1040-0400</issn><issn>1572-9001</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNp9kU1LxDAQhoMoqKt_wFPAk2B1krRN423xa4UVEdZzyCZTt9Jt1qTrx783a0VvHoaZzDzvS-Al5IjBGQOQ55ExzvMMmEqViyrjW2SPFZJnCoBtpxlyyFLBLtmP8SUtWSmKPdI-TKj_aJzpG99RX9Ml9os0Nh3SpqP9AukqYMTO4ubqmmgD9kjfTY-BLn2Ldt1ivKBXN7NT-jgb391T0zn6Ztpvzdynh-lM-xkxHpCd2rQRD3_6iDzdXM8uJ9n04fbucjzNrFCyz7hy-VyVlbR5jVYWpoSi5hVUzlV1aUFIAGcF45IZ5So-z6UtCqykg9qqkokRORl8F6bVq9AsTfjU3jR6Mp7qzQ6EKspSsrcNezywq-Bf1xh7_eLXIX04ai6kKHOhQCWKD5QNPsaA9a8tA71JQA8J6JSA_k4gqUdEDKKY4O4Zw5_1P6ovoQuG9Q</recordid><startdate>20200401</startdate><enddate>20200401</enddate><creator>Bergès, Jacqueline</creator><creator>Domin, Dominik</creator><creator>Pilmé, Julien</creator><creator>Braïda, Benoît</creator><creator>Houée-Levin, Chantal</creator><general>Springer US</general><general>Springer Nature B.V</general><general>Springer Verlag (Germany)</general><scope>AAYXX</scope><scope>CITATION</scope><scope>1XC</scope><scope>VOOES</scope><orcidid>https://orcid.org/0000-0003-3725-3215</orcidid><orcidid>https://orcid.org/0000-0003-0421-4930</orcidid></search><sort><creationdate>20200401</creationdate><title>OH oxidation of methionine in the presence of discrete water molecules: DFT, QTAIM and valence bond analyses</title><author>Bergès, Jacqueline ; Domin, Dominik ; Pilmé, Julien ; Braïda, Benoît ; Houée-Levin, Chantal</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c397t-29d4b9687c4fec75a605f2808dd8f6c03700dc31271a9d82b47c55e87d0fc9613</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Adducts</topic><topic>Aqueous environments</topic><topic>Cations</topic><topic>Chemical Sciences</topic><topic>Chemistry</topic><topic>Chemistry and Materials Science</topic><topic>Computer Applications in Chemistry</topic><topic>Density functional theory</topic><topic>Dimethyl sulfide</topic><topic>Functional groups</topic><topic>Methionine</topic><topic>Molecular dynamics</topic><topic>Original Research</topic><topic>Oxidation</topic><topic>Physical Chemistry</topic><topic>Theoretical and Computational Chemistry</topic><topic>Water chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bergès, Jacqueline</creatorcontrib><creatorcontrib>Domin, Dominik</creatorcontrib><creatorcontrib>Pilmé, Julien</creatorcontrib><creatorcontrib>Braïda, Benoît</creatorcontrib><creatorcontrib>Houée-Levin, Chantal</creatorcontrib><collection>CrossRef</collection><collection>Hyper Article en Ligne (HAL)</collection><collection>Hyper Article en Ligne (HAL) (Open Access)</collection><jtitle>Structural chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bergès, Jacqueline</au><au>Domin, Dominik</au><au>Pilmé, Julien</au><au>Braïda, Benoît</au><au>Houée-Levin, Chantal</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>OH oxidation of methionine in the presence of discrete water molecules: DFT, QTAIM and valence bond analyses</atitle><jtitle>Structural chemistry</jtitle><stitle>Struct Chem</stitle><date>2020-04-01</date><risdate>2020</risdate><volume>31</volume><issue>2</issue><spage>719</spage><epage>730</epage><pages>719-730</pages><issn>1040-0400</issn><eissn>1572-9001</eissn><abstract>The first steps of the oxidation process of amino acid methionine (Met, CAS
63-68-3
) by
•
OH radicals, leading to Met-OH
•
adduct and then to Met radical cation, were investigated theoretically over the last few years considering the aqueous environment as a continuum. In this work, following the same procedure that we used for the oxidation of dimethyl sulfide as reported by Domin et al. (J Phys Chem B, 121:9321), discrete water molecules, as well as relative positions, of the
•
OH radical to Met were taken from molecular dynamics calculations. The presence of water molecules strongly modifies the relative energies of Met-OH adducts and cations when water is properly modeled. Depending on the terminal functional groups and on the position of the
•
OH radical, several stable structures were found; however, the most stable radical is the N-centered or the S∴N radical cation. QTAIM analysis and valence bond (VB) treatment allowed for the characterization of the 2c∴3e nature of S∴N and S∴OH bonds. VB analysis estimated the probability of the heterolytic rupture of the
•
OH adduct that is modified by the presence of water molecules.
Graphical abstract
Oxidation of amino acid methionine by
•
OH radicals in the presence of discrete water molecules.</abstract><cop>New York</cop><pub>Springer US</pub><doi>10.1007/s11224-019-01438-2</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0003-3725-3215</orcidid><orcidid>https://orcid.org/0000-0003-0421-4930</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Adducts Aqueous environments Cations Chemical Sciences Chemistry Chemistry and Materials Science Computer Applications in Chemistry Density functional theory Dimethyl sulfide Functional groups Methionine Molecular dynamics Original Research Oxidation Physical Chemistry Theoretical and Computational Chemistry Water chemistry |
title | OH oxidation of methionine in the presence of discrete water molecules: DFT, QTAIM and valence bond analyses |
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