Tackling inconsistencies among freshwater invertebrate trait databases: harmonising across continents and aggregating taxonomic resolution
Use of invertebrate traits rather than species composition may facilitate large‐scale comparisons of community structure and responses to disturbance in freshwater ecology because the same traits potentially occur everywhere. In recent years, comprehensive invertebrate trait databases have been esta...
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Veröffentlicht in: | Freshwater biology 2022-02, Vol.67 (2), p.275-291 |
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creator | Kunz, Stefan Kefford, Ben J. Schmidt‐Kloiber, Astrid Matthaei, Christoph D. Usseglio‐Polatera, Philippe Graf, Wolfram Poff, N. LeRoy Metzeling, Leon Twardochleb, Laura Hawkins, Charles P. Schäfer, Ralf B. |
description | Use of invertebrate traits rather than species composition may facilitate large‐scale comparisons of community structure and responses to disturbance in freshwater ecology because the same traits potentially occur everywhere. In recent years, comprehensive invertebrate trait databases have been established at different scales (e.g., regions, continents). The wide availability of invertebrate trait data supports large‐scale studies. However, a number of data‐related issues complicate the use of invertebrate traits for ecological studies. It is uncertain how harmonising varying trait definitions among databases might influence subsequent identification of trait–environment relationships. Furthermore, there have been few comparisons of trait aggregation approaches with expert‐assigned trait affinities.
We describe inconsistencies in the definitions of traits used to create freshwater invertebrate trait databases in Europe, North America, New Zealand, and Australia. Based on our comparisons of these databases, we established four novel trait datasets by harmonising definitions of commonly used traits. Next, we used two of these datasets to compare aggregated traits obtained by different aggregation methods with traits assigned by experts, both at the family level. The trait aggregation methods that we compared used either the mean or the median and different weightings. We further explored the effects of harmonisation and trait aggregation by re‐analysing data from a case study.
We found that among databases, trait definitions often differed because varying numbers of traits were used to describe particular functions (e.g., respiration traits) and the way those functions were described also varied (e.g., for feeding mode some databases focused on the food source, whereas others focused on mouthpart morphology). The coding to describe traits (binary, fuzzy) also varied among databases.
Our comparison of different aggregation methods showed that family‐level aggregated and expert‐assigned traits were similar, especially when traits were aggregated based on the median of trait values of taxa within a family. The case study showed that harmonised and aggregated data identified similar trait–environment relationships to non‐aggregated data. However, harmonised and aggregated data yielded only partially similar values for functional diversity metrics when compared to the case study results.
By identifying inconsistencies in trait definitions we hope to motivate the |
doi_str_mv | 10.1111/fwb.13840 |
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We describe inconsistencies in the definitions of traits used to create freshwater invertebrate trait databases in Europe, North America, New Zealand, and Australia. Based on our comparisons of these databases, we established four novel trait datasets by harmonising definitions of commonly used traits. Next, we used two of these datasets to compare aggregated traits obtained by different aggregation methods with traits assigned by experts, both at the family level. The trait aggregation methods that we compared used either the mean or the median and different weightings. We further explored the effects of harmonisation and trait aggregation by re‐analysing data from a case study.
We found that among databases, trait definitions often differed because varying numbers of traits were used to describe particular functions (e.g., respiration traits) and the way those functions were described also varied (e.g., for feeding mode some databases focused on the food source, whereas others focused on mouthpart morphology). The coding to describe traits (binary, fuzzy) also varied among databases.
Our comparison of different aggregation methods showed that family‐level aggregated and expert‐assigned traits were similar, especially when traits were aggregated based on the median of trait values of taxa within a family. The case study showed that harmonised and aggregated data identified similar trait–environment relationships to non‐aggregated data. However, harmonised and aggregated data yielded only partially similar values for functional diversity metrics when compared to the case study results.
By identifying inconsistencies in trait definitions we hope to motivate the development of standardised definitions for invertebrate traits. Our results also illustrate the usefulness of harmonised datasets for ecological study and provide guidance for the circumstances under which the choice of trait aggregation method is important.</description><identifier>ISSN: 0046-5070</identifier><identifier>EISSN: 1365-2427</identifier><identifier>DOI: 10.1111/fwb.13840</identifier><language>eng</language><publisher>Oxford: Wiley Subscription Services, Inc</publisher><subject>Agglomeration ; Aggregation ; Biodiversity and Ecology ; Case studies ; Community composition ; Community structure ; Continents ; data synthesis ; Datasets ; Ecological effects ; Ecological studies ; Ecology, environment ; Ecosystems ; Environment and Society ; Environmental Sciences ; Feeding behavior ; Food sources ; Freshwater ; Freshwater ecology ; Freshwater invertebrates ; Inland water environment ; Invertebrates ; large‐scale comparisons ; Life Sciences ; Methods ; Species composition ; trait aggregation ; trait definitions ; trait–environment relationships</subject><ispartof>Freshwater biology, 2022-02, Vol.67 (2), p.275-291</ispartof><rights>2021 The Authors. published by John Wiley & Sons Ltd.</rights><rights>2021. This article is published under http://creativecommons.org/licenses/by-nc-nd/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Attribution - NonCommercial - ShareAlike</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3660-f8db0587378e67662dfba5616baa9803503a2f1dbce986d2fd2578f3444386803</citedby><cites>FETCH-LOGICAL-c3660-f8db0587378e67662dfba5616baa9803503a2f1dbce986d2fd2578f3444386803</cites><orcidid>0000-0001-7074-1865 ; 0000-0003-1247-0248 ; 0000-0001-6789-4254 ; 0000-0002-1390-8742</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Ffwb.13840$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Ffwb.13840$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>230,315,781,785,886,1418,27929,27930,45579,45580</link.rule.ids><backlink>$$Uhttps://hal.univ-lorraine.fr/hal-03451664$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Kunz, Stefan</creatorcontrib><creatorcontrib>Kefford, Ben J.</creatorcontrib><creatorcontrib>Schmidt‐Kloiber, Astrid</creatorcontrib><creatorcontrib>Matthaei, Christoph D.</creatorcontrib><creatorcontrib>Usseglio‐Polatera, Philippe</creatorcontrib><creatorcontrib>Graf, Wolfram</creatorcontrib><creatorcontrib>Poff, N. LeRoy</creatorcontrib><creatorcontrib>Metzeling, Leon</creatorcontrib><creatorcontrib>Twardochleb, Laura</creatorcontrib><creatorcontrib>Hawkins, Charles P.</creatorcontrib><creatorcontrib>Schäfer, Ralf B.</creatorcontrib><title>Tackling inconsistencies among freshwater invertebrate trait databases: harmonising across continents and aggregating taxonomic resolution</title><title>Freshwater biology</title><description>Use of invertebrate traits rather than species composition may facilitate large‐scale comparisons of community structure and responses to disturbance in freshwater ecology because the same traits potentially occur everywhere. In recent years, comprehensive invertebrate trait databases have been established at different scales (e.g., regions, continents). The wide availability of invertebrate trait data supports large‐scale studies. However, a number of data‐related issues complicate the use of invertebrate traits for ecological studies. It is uncertain how harmonising varying trait definitions among databases might influence subsequent identification of trait–environment relationships. Furthermore, there have been few comparisons of trait aggregation approaches with expert‐assigned trait affinities.
We describe inconsistencies in the definitions of traits used to create freshwater invertebrate trait databases in Europe, North America, New Zealand, and Australia. Based on our comparisons of these databases, we established four novel trait datasets by harmonising definitions of commonly used traits. Next, we used two of these datasets to compare aggregated traits obtained by different aggregation methods with traits assigned by experts, both at the family level. The trait aggregation methods that we compared used either the mean or the median and different weightings. We further explored the effects of harmonisation and trait aggregation by re‐analysing data from a case study.
We found that among databases, trait definitions often differed because varying numbers of traits were used to describe particular functions (e.g., respiration traits) and the way those functions were described also varied (e.g., for feeding mode some databases focused on the food source, whereas others focused on mouthpart morphology). The coding to describe traits (binary, fuzzy) also varied among databases.
Our comparison of different aggregation methods showed that family‐level aggregated and expert‐assigned traits were similar, especially when traits were aggregated based on the median of trait values of taxa within a family. The case study showed that harmonised and aggregated data identified similar trait–environment relationships to non‐aggregated data. However, harmonised and aggregated data yielded only partially similar values for functional diversity metrics when compared to the case study results.
By identifying inconsistencies in trait definitions we hope to motivate the development of standardised definitions for invertebrate traits. Our results also illustrate the usefulness of harmonised datasets for ecological study and provide guidance for the circumstances under which the choice of trait aggregation method is important.</description><subject>Agglomeration</subject><subject>Aggregation</subject><subject>Biodiversity and Ecology</subject><subject>Case studies</subject><subject>Community composition</subject><subject>Community structure</subject><subject>Continents</subject><subject>data synthesis</subject><subject>Datasets</subject><subject>Ecological effects</subject><subject>Ecological studies</subject><subject>Ecology, environment</subject><subject>Ecosystems</subject><subject>Environment and Society</subject><subject>Environmental Sciences</subject><subject>Feeding behavior</subject><subject>Food sources</subject><subject>Freshwater</subject><subject>Freshwater ecology</subject><subject>Freshwater invertebrates</subject><subject>Inland water environment</subject><subject>Invertebrates</subject><subject>large‐scale comparisons</subject><subject>Life Sciences</subject><subject>Methods</subject><subject>Species composition</subject><subject>trait aggregation</subject><subject>trait definitions</subject><subject>trait–environment relationships</subject><issn>0046-5070</issn><issn>1365-2427</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>WIN</sourceid><recordid>eNp1kctKAzEUhoMoWC8L32DAlYvR3Ce6U_EGBTeKy3BmJmmj00STtNVX8KlNrejKbA45fOfjHH6EDgg-JuWd2GV7TJjieAONCJOippw2m2iEMZe1wA3eRjspPWOMlWjoCH0-QPcyOD-pnO-CTy5l4ztnUgWzULo2mjRdQjaxAAsTs2lj-VU5gstVDxlaSCadVVOIZcCllQq6GFKqii87b3wuMt9XMJlEM4G8IjK8Bx9mrquKPwzz7ILfQ1sWhmT2f-ouery-eri8rcf3N3eX5-O6Y1Li2qq-xUI1rFFGNlLS3rYgJJEtwKnCTGAG1JK-7cypkj21PRWNsoxzzpQswC46WnunMOjX6GYQP3QAp2_Px3rVw4wLIiVfkMIertnXGN7mJmX9HObRl_U0lZQLShUmf8bvu6Oxv1qC9SoWXWLR37EU9mTNLt1gPv4H9fXTxXriC2vrkVM</recordid><startdate>202202</startdate><enddate>202202</enddate><creator>Kunz, Stefan</creator><creator>Kefford, Ben J.</creator><creator>Schmidt‐Kloiber, Astrid</creator><creator>Matthaei, Christoph D.</creator><creator>Usseglio‐Polatera, Philippe</creator><creator>Graf, Wolfram</creator><creator>Poff, N. LeRoy</creator><creator>Metzeling, Leon</creator><creator>Twardochleb, Laura</creator><creator>Hawkins, Charles P.</creator><creator>Schäfer, Ralf B.</creator><general>Wiley Subscription Services, Inc</general><general>Wiley</general><scope>24P</scope><scope>WIN</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QH</scope><scope>7SN</scope><scope>7SS</scope><scope>7UA</scope><scope>C1K</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><scope>M7N</scope><scope>1XC</scope><scope>VOOES</scope><orcidid>https://orcid.org/0000-0001-7074-1865</orcidid><orcidid>https://orcid.org/0000-0003-1247-0248</orcidid><orcidid>https://orcid.org/0000-0001-6789-4254</orcidid><orcidid>https://orcid.org/0000-0002-1390-8742</orcidid></search><sort><creationdate>202202</creationdate><title>Tackling inconsistencies among freshwater invertebrate trait databases: harmonising across continents and aggregating taxonomic resolution</title><author>Kunz, Stefan ; Kefford, Ben J. ; Schmidt‐Kloiber, Astrid ; Matthaei, Christoph D. ; Usseglio‐Polatera, Philippe ; Graf, Wolfram ; Poff, N. 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LeRoy</creatorcontrib><creatorcontrib>Metzeling, Leon</creatorcontrib><creatorcontrib>Twardochleb, Laura</creatorcontrib><creatorcontrib>Hawkins, Charles P.</creatorcontrib><creatorcontrib>Schäfer, Ralf B.</creatorcontrib><collection>Wiley Online Library (Open Access Collection)</collection><collection>Wiley Online Library (Open Access Collection)</collection><collection>CrossRef</collection><collection>Aqualine</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Water Resources Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Hyper Article en Ligne (HAL)</collection><collection>Hyper Article en Ligne (HAL) (Open Access)</collection><jtitle>Freshwater biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kunz, Stefan</au><au>Kefford, Ben J.</au><au>Schmidt‐Kloiber, Astrid</au><au>Matthaei, Christoph D.</au><au>Usseglio‐Polatera, Philippe</au><au>Graf, Wolfram</au><au>Poff, N. LeRoy</au><au>Metzeling, Leon</au><au>Twardochleb, Laura</au><au>Hawkins, Charles P.</au><au>Schäfer, Ralf B.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Tackling inconsistencies among freshwater invertebrate trait databases: harmonising across continents and aggregating taxonomic resolution</atitle><jtitle>Freshwater biology</jtitle><date>2022-02</date><risdate>2022</risdate><volume>67</volume><issue>2</issue><spage>275</spage><epage>291</epage><pages>275-291</pages><issn>0046-5070</issn><eissn>1365-2427</eissn><abstract>Use of invertebrate traits rather than species composition may facilitate large‐scale comparisons of community structure and responses to disturbance in freshwater ecology because the same traits potentially occur everywhere. In recent years, comprehensive invertebrate trait databases have been established at different scales (e.g., regions, continents). The wide availability of invertebrate trait data supports large‐scale studies. However, a number of data‐related issues complicate the use of invertebrate traits for ecological studies. It is uncertain how harmonising varying trait definitions among databases might influence subsequent identification of trait–environment relationships. Furthermore, there have been few comparisons of trait aggregation approaches with expert‐assigned trait affinities.
We describe inconsistencies in the definitions of traits used to create freshwater invertebrate trait databases in Europe, North America, New Zealand, and Australia. Based on our comparisons of these databases, we established four novel trait datasets by harmonising definitions of commonly used traits. Next, we used two of these datasets to compare aggregated traits obtained by different aggregation methods with traits assigned by experts, both at the family level. The trait aggregation methods that we compared used either the mean or the median and different weightings. We further explored the effects of harmonisation and trait aggregation by re‐analysing data from a case study.
We found that among databases, trait definitions often differed because varying numbers of traits were used to describe particular functions (e.g., respiration traits) and the way those functions were described also varied (e.g., for feeding mode some databases focused on the food source, whereas others focused on mouthpart morphology). The coding to describe traits (binary, fuzzy) also varied among databases.
Our comparison of different aggregation methods showed that family‐level aggregated and expert‐assigned traits were similar, especially when traits were aggregated based on the median of trait values of taxa within a family. The case study showed that harmonised and aggregated data identified similar trait–environment relationships to non‐aggregated data. However, harmonised and aggregated data yielded only partially similar values for functional diversity metrics when compared to the case study results.
By identifying inconsistencies in trait definitions we hope to motivate the development of standardised definitions for invertebrate traits. Our results also illustrate the usefulness of harmonised datasets for ecological study and provide guidance for the circumstances under which the choice of trait aggregation method is important.</abstract><cop>Oxford</cop><pub>Wiley Subscription Services, Inc</pub><doi>10.1111/fwb.13840</doi><tpages>17</tpages><orcidid>https://orcid.org/0000-0001-7074-1865</orcidid><orcidid>https://orcid.org/0000-0003-1247-0248</orcidid><orcidid>https://orcid.org/0000-0001-6789-4254</orcidid><orcidid>https://orcid.org/0000-0002-1390-8742</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Agglomeration Aggregation Biodiversity and Ecology Case studies Community composition Community structure Continents data synthesis Datasets Ecological effects Ecological studies Ecology, environment Ecosystems Environment and Society Environmental Sciences Feeding behavior Food sources Freshwater Freshwater ecology Freshwater invertebrates Inland water environment Invertebrates large‐scale comparisons Life Sciences Methods Species composition trait aggregation trait definitions trait–environment relationships |
title | Tackling inconsistencies among freshwater invertebrate trait databases: harmonising across continents and aggregating taxonomic resolution |
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