In situ estimation of genetic variation of functional and ecological traits in Quercus petraea and Q. robur
Predicting the evolutionary potential of natural tree populations requires the estimation of heritability and genetic correlations among traits on which selection acts, as differences in evolutionary success between species may rely on differences for these genetic parameters. In situ estimates are...
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creator | Alexandre, Hermine Truffaut, Laura Ducousso, Alexis Louvet, Jean-Marc Nepveu, Gérard Torres-Ruiz, José M. Lagane, Frédéric Firmat, Cyril Musch, Brigitte Delzon, Sylvain Kremer, Antoine |
description | Predicting the evolutionary potential of natural tree populations requires the estimation of heritability and genetic correlations among traits on which selection acts, as differences in evolutionary success between species may rely on differences for these genetic parameters.
In situ
estimates are expected to be more accurate than measures done under controlled conditions which do not reflect the natural environmental variance. The aim of the current study was to estimate three genetic parameters (i.e., heritability, evolvability, and genetic correlations) in a natural mixed oak stand composed of
Quercus petraea
and
Quercus robur
about 100 years old, for 58 traits of ecological, and functional relevance (growth, reproduction, phenology, physiology, resilience, structure, morphology, and defense). First, we estimated genetic parameters directly in situ using realized genomic relatedness of adult trees and parentage relationships over two generations to estimate the traits’ additive variance. Secondly, we benefited from existing
ex situ
experiments (progeny tests and conservation collection) installed with the same populations, thus allowing comparisons of in situ heritability estimates with more traditional methods. Heritability and evolvability estimates obtained with different methods varied substantially and showed large confidence intervals; however, we found that in situ were less precise than ex situ estimates, and assessments over two generations (with deeper relatedness) improved estimates of heritability while large sampling sizes are needed for accurate estimations. At the biological level, heritability values varied moderately across different ecological and functional categories of traits, and genetic correlations among traits were conserved over the two species. We identified limits for using realized genomic relatedness in natural stands to estimate the genetic variance, given the overall low variance of genetic relatedness and the rather low sampling sizes of currently used long-term genetic plots in forestry. These limits can be overcome if larger sample sizes are considered, or if the approach is extended over the next generation. |
doi_str_mv | 10.1007/s11295-019-1407-9 |
format | Article |
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In situ
estimates are expected to be more accurate than measures done under controlled conditions which do not reflect the natural environmental variance. The aim of the current study was to estimate three genetic parameters (i.e., heritability, evolvability, and genetic correlations) in a natural mixed oak stand composed of
Quercus petraea
and
Quercus robur
about 100 years old, for 58 traits of ecological, and functional relevance (growth, reproduction, phenology, physiology, resilience, structure, morphology, and defense). First, we estimated genetic parameters directly in situ using realized genomic relatedness of adult trees and parentage relationships over two generations to estimate the traits’ additive variance. Secondly, we benefited from existing
ex situ
experiments (progeny tests and conservation collection) installed with the same populations, thus allowing comparisons of in situ heritability estimates with more traditional methods. Heritability and evolvability estimates obtained with different methods varied substantially and showed large confidence intervals; however, we found that in situ were less precise than ex situ estimates, and assessments over two generations (with deeper relatedness) improved estimates of heritability while large sampling sizes are needed for accurate estimations. At the biological level, heritability values varied moderately across different ecological and functional categories of traits, and genetic correlations among traits were conserved over the two species. We identified limits for using realized genomic relatedness in natural stands to estimate the genetic variance, given the overall low variance of genetic relatedness and the rather low sampling sizes of currently used long-term genetic plots in forestry. These limits can be overcome if larger sample sizes are considered, or if the approach is extended over the next generation.</description><identifier>ISSN: 1614-2942</identifier><identifier>EISSN: 1614-2950</identifier><identifier>DOI: 10.1007/s11295-019-1407-9</identifier><identifier>PMID: 32256274</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Biological evolution ; Biomedical and Life Sciences ; Biotechnology ; Confidence intervals ; Controlled conditions ; Correlation ; Ecology ; Environmental Sciences ; Estimates ; Forestry ; Genetic diversity ; Genetic variance ; Heritability ; Life Sciences ; Morphology ; Original Article ; Parameter estimation ; Plant Breeding/Biotechnology ; Plant Genetics and Genomics ; Populations ; Progeny ; Quercus petraea ; Quercus robur ; Sampling ; Tree Biology</subject><ispartof>Tree genetics & genomes, 2020-04, Vol.16 (2), p.1-23, Article 32</ispartof><rights>Springer-Verlag GmbH Germany, part of Springer Nature 2020</rights><rights>Tree Genetics and Genomes is a copyright of Springer, (2020). All Rights Reserved.</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c393t-8b5a9785494ac277df8a0e968e0e6c7fabf57343c72f8d9bed7cea8953c80e3e3</citedby><cites>FETCH-LOGICAL-c393t-8b5a9785494ac277df8a0e968e0e6c7fabf57343c72f8d9bed7cea8953c80e3e3</cites><orcidid>0000-0002-3372-3235 ; 0000-0003-3442-1711 ; 0000-0003-1367-7056 ; 0000-0002-8556-0132</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11295-019-1407-9$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11295-019-1407-9$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>230,314,780,784,885,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://hal.inrae.fr/hal-03040730$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Alexandre, Hermine</creatorcontrib><creatorcontrib>Truffaut, Laura</creatorcontrib><creatorcontrib>Ducousso, Alexis</creatorcontrib><creatorcontrib>Louvet, Jean-Marc</creatorcontrib><creatorcontrib>Nepveu, Gérard</creatorcontrib><creatorcontrib>Torres-Ruiz, José M.</creatorcontrib><creatorcontrib>Lagane, Frédéric</creatorcontrib><creatorcontrib>Firmat, Cyril</creatorcontrib><creatorcontrib>Musch, Brigitte</creatorcontrib><creatorcontrib>Delzon, Sylvain</creatorcontrib><creatorcontrib>Kremer, Antoine</creatorcontrib><title>In situ estimation of genetic variation of functional and ecological traits in Quercus petraea and Q. robur</title><title>Tree genetics & genomes</title><addtitle>Tree Genetics & Genomes</addtitle><description>Predicting the evolutionary potential of natural tree populations requires the estimation of heritability and genetic correlations among traits on which selection acts, as differences in evolutionary success between species may rely on differences for these genetic parameters.
In situ
estimates are expected to be more accurate than measures done under controlled conditions which do not reflect the natural environmental variance. The aim of the current study was to estimate three genetic parameters (i.e., heritability, evolvability, and genetic correlations) in a natural mixed oak stand composed of
Quercus petraea
and
Quercus robur
about 100 years old, for 58 traits of ecological, and functional relevance (growth, reproduction, phenology, physiology, resilience, structure, morphology, and defense). First, we estimated genetic parameters directly in situ using realized genomic relatedness of adult trees and parentage relationships over two generations to estimate the traits’ additive variance. Secondly, we benefited from existing
ex situ
experiments (progeny tests and conservation collection) installed with the same populations, thus allowing comparisons of in situ heritability estimates with more traditional methods. Heritability and evolvability estimates obtained with different methods varied substantially and showed large confidence intervals; however, we found that in situ were less precise than ex situ estimates, and assessments over two generations (with deeper relatedness) improved estimates of heritability while large sampling sizes are needed for accurate estimations. At the biological level, heritability values varied moderately across different ecological and functional categories of traits, and genetic correlations among traits were conserved over the two species. We identified limits for using realized genomic relatedness in natural stands to estimate the genetic variance, given the overall low variance of genetic relatedness and the rather low sampling sizes of currently used long-term genetic plots in forestry. These limits can be overcome if larger sample sizes are considered, or if the approach is extended over the next generation.</description><subject>Biological evolution</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Confidence intervals</subject><subject>Controlled conditions</subject><subject>Correlation</subject><subject>Ecology</subject><subject>Environmental Sciences</subject><subject>Estimates</subject><subject>Forestry</subject><subject>Genetic diversity</subject><subject>Genetic variance</subject><subject>Heritability</subject><subject>Life Sciences</subject><subject>Morphology</subject><subject>Original Article</subject><subject>Parameter estimation</subject><subject>Plant Breeding/Biotechnology</subject><subject>Plant Genetics and Genomics</subject><subject>Populations</subject><subject>Progeny</subject><subject>Quercus petraea</subject><subject>Quercus robur</subject><subject>Sampling</subject><subject>Tree Biology</subject><issn>1614-2942</issn><issn>1614-2950</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kc1KAzEUhYMoVqsP4C7gysXU_Mwkk2UpagsFKeg6ZNI7NbVOajJT8O3NOFJXrnJz-M6Bew9CN5RMKCHyPlLKVJERqjKaE5mpE3RBBc2zpJLT45yzEbqMcUtILokQ52jEGSsEk_kFel80OLq2wxBb92Fa5xvsa7yBBlpn8cEEdxTrrrH9bHbYNGsM1u_8xtn0bYNxbcSuwasOgu0i3kPSwPyAqwkOvurCFTqrzS7C9e87Rq-PDy-zebZ8flrMpsvMcsXbrKwKo2RZ5Co3lkm5rktDQIkSCAgra1PVheQ5t5LV5VpVsJYWTKkKbksCHPgY3Q25b2an9yGtFb60N07Pp0vda4STdC5ODjSxtwO7D_6zS0fQW9-FtGLUjAtBhSypShQdKBt8jAHqYywluq9CD1XoVIXuq9C9hw2emNhmA-Ev-X_TN4Vaih4</recordid><startdate>20200401</startdate><enddate>20200401</enddate><creator>Alexandre, Hermine</creator><creator>Truffaut, Laura</creator><creator>Ducousso, Alexis</creator><creator>Louvet, Jean-Marc</creator><creator>Nepveu, Gérard</creator><creator>Torres-Ruiz, José M.</creator><creator>Lagane, Frédéric</creator><creator>Firmat, Cyril</creator><creator>Musch, Brigitte</creator><creator>Delzon, Sylvain</creator><creator>Kremer, Antoine</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><general>Springer Verlag</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X2</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>1XC</scope><scope>VOOES</scope><orcidid>https://orcid.org/0000-0002-3372-3235</orcidid><orcidid>https://orcid.org/0000-0003-3442-1711</orcidid><orcidid>https://orcid.org/0000-0003-1367-7056</orcidid><orcidid>https://orcid.org/0000-0002-8556-0132</orcidid></search><sort><creationdate>20200401</creationdate><title>In situ estimation of genetic variation of functional and ecological traits in Quercus petraea and Q. robur</title><author>Alexandre, Hermine ; Truffaut, Laura ; Ducousso, Alexis ; Louvet, Jean-Marc ; Nepveu, Gérard ; Torres-Ruiz, José M. ; Lagane, Frédéric ; Firmat, Cyril ; Musch, Brigitte ; Delzon, Sylvain ; Kremer, Antoine</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c393t-8b5a9785494ac277df8a0e968e0e6c7fabf57343c72f8d9bed7cea8953c80e3e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Biological evolution</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Confidence intervals</topic><topic>Controlled conditions</topic><topic>Correlation</topic><topic>Ecology</topic><topic>Environmental Sciences</topic><topic>Estimates</topic><topic>Forestry</topic><topic>Genetic diversity</topic><topic>Genetic variance</topic><topic>Heritability</topic><topic>Life Sciences</topic><topic>Morphology</topic><topic>Original Article</topic><topic>Parameter estimation</topic><topic>Plant Breeding/Biotechnology</topic><topic>Plant Genetics and Genomics</topic><topic>Populations</topic><topic>Progeny</topic><topic>Quercus petraea</topic><topic>Quercus robur</topic><topic>Sampling</topic><topic>Tree Biology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Alexandre, Hermine</creatorcontrib><creatorcontrib>Truffaut, Laura</creatorcontrib><creatorcontrib>Ducousso, Alexis</creatorcontrib><creatorcontrib>Louvet, Jean-Marc</creatorcontrib><creatorcontrib>Nepveu, Gérard</creatorcontrib><creatorcontrib>Torres-Ruiz, José M.</creatorcontrib><creatorcontrib>Lagane, Frédéric</creatorcontrib><creatorcontrib>Firmat, Cyril</creatorcontrib><creatorcontrib>Musch, Brigitte</creatorcontrib><creatorcontrib>Delzon, Sylvain</creatorcontrib><creatorcontrib>Kremer, Antoine</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>Hyper Article en Ligne (HAL)</collection><collection>Hyper Article en Ligne (HAL) (Open Access)</collection><jtitle>Tree genetics & genomes</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Alexandre, Hermine</au><au>Truffaut, Laura</au><au>Ducousso, Alexis</au><au>Louvet, Jean-Marc</au><au>Nepveu, Gérard</au><au>Torres-Ruiz, José M.</au><au>Lagane, Frédéric</au><au>Firmat, Cyril</au><au>Musch, Brigitte</au><au>Delzon, Sylvain</au><au>Kremer, Antoine</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>In situ estimation of genetic variation of functional and ecological traits in Quercus petraea and Q. robur</atitle><jtitle>Tree genetics & genomes</jtitle><stitle>Tree Genetics & Genomes</stitle><date>2020-04-01</date><risdate>2020</risdate><volume>16</volume><issue>2</issue><spage>1</spage><epage>23</epage><pages>1-23</pages><artnum>32</artnum><issn>1614-2942</issn><eissn>1614-2950</eissn><abstract>Predicting the evolutionary potential of natural tree populations requires the estimation of heritability and genetic correlations among traits on which selection acts, as differences in evolutionary success between species may rely on differences for these genetic parameters.
In situ
estimates are expected to be more accurate than measures done under controlled conditions which do not reflect the natural environmental variance. The aim of the current study was to estimate three genetic parameters (i.e., heritability, evolvability, and genetic correlations) in a natural mixed oak stand composed of
Quercus petraea
and
Quercus robur
about 100 years old, for 58 traits of ecological, and functional relevance (growth, reproduction, phenology, physiology, resilience, structure, morphology, and defense). First, we estimated genetic parameters directly in situ using realized genomic relatedness of adult trees and parentage relationships over two generations to estimate the traits’ additive variance. Secondly, we benefited from existing
ex situ
experiments (progeny tests and conservation collection) installed with the same populations, thus allowing comparisons of in situ heritability estimates with more traditional methods. Heritability and evolvability estimates obtained with different methods varied substantially and showed large confidence intervals; however, we found that in situ were less precise than ex situ estimates, and assessments over two generations (with deeper relatedness) improved estimates of heritability while large sampling sizes are needed for accurate estimations. At the biological level, heritability values varied moderately across different ecological and functional categories of traits, and genetic correlations among traits were conserved over the two species. We identified limits for using realized genomic relatedness in natural stands to estimate the genetic variance, given the overall low variance of genetic relatedness and the rather low sampling sizes of currently used long-term genetic plots in forestry. These limits can be overcome if larger sample sizes are considered, or if the approach is extended over the next generation.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>32256274</pmid><doi>10.1007/s11295-019-1407-9</doi><tpages>23</tpages><orcidid>https://orcid.org/0000-0002-3372-3235</orcidid><orcidid>https://orcid.org/0000-0003-3442-1711</orcidid><orcidid>https://orcid.org/0000-0003-1367-7056</orcidid><orcidid>https://orcid.org/0000-0002-8556-0132</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Biological evolution Biomedical and Life Sciences Biotechnology Confidence intervals Controlled conditions Correlation Ecology Environmental Sciences Estimates Forestry Genetic diversity Genetic variance Heritability Life Sciences Morphology Original Article Parameter estimation Plant Breeding/Biotechnology Plant Genetics and Genomics Populations Progeny Quercus petraea Quercus robur Sampling Tree Biology |
title | In situ estimation of genetic variation of functional and ecological traits in Quercus petraea and Q. robur |
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