Genomic Exploration of the Hemiascomycetous Yeasts: 20. Evolution of gene redundancy compared to Saccharomyces cerevisiae
We have evaluated the degree of gene redundancy in the nuclear genomes of 13 hemiascomycetous yeast species. Saccharomyces cerevisiae singletons and gene families appear generally conserved in these species as singletons and families of similar size, respectively. Variations of the number of homolog...
Gespeichert in:
| Veröffentlicht in: | FEBS letters 2000-12, Vol.487 (1), p.122-133 |
|---|---|
| Hauptverfasser: | , , , , , , , , , , , , , , , , , , , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 133 |
|---|---|
| container_issue | 1 |
| container_start_page | 122 |
| container_title | FEBS letters |
| container_volume | 487 |
| creator | Llorente, Bertrand Durrens, Pascal Malpertuy, Alain Aigle, Michel Artiguenave, François Blandin, Gaëlle Bolotin-Fukuhara, Monique Bon, Elisabeth Brottier, Philippe Casaregola, Serge Dujon, Bernard de Montigny, Jacky Lépingle, Andrée Neuvéglise, Cécile Ozier-Kalogeropoulos, Odile Potier, Serge Saurin, William Tekaia, Fredj Toffano-Nioche, Claire Wésolowski-Louvel, Micheline Wincker, Patrick Weissenbach, Jean Souciet, Jean-Luc Gaillardin, Claude |
| description | We have evaluated the degree of gene redundancy in the nuclear genomes of 13 hemiascomycetous yeast species.
Saccharomyces cerevisiae singletons and gene families appear generally conserved in these species as singletons and families of similar size, respectively. Variations of the number of homologues with respect to that expected affect from 7 to less than 24% of each genome. Since
S. cerevisiae homologues represent the majority of the genes identified in the genomes studied, the overall degree of gene redundancy seems conserved across all species. This is best explained by a dynamic equilibrium resulting from numerous events of gene duplication and deletion rather than by a massive duplication event occurring in some lineages and not in others. |
| doi_str_mv | 10.1016/S0014-5793(00)02291-2 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_hal_p</sourceid><recordid>TN_cdi_hal_primary_oai_HAL_hal_02696721v1</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0014579300022912</els_id><sourcerecordid>72480426</sourcerecordid><originalsourceid>FETCH-LOGICAL-c5072-1a261de0b1ea332b4bb0bfa804a8833357390943ef5b1fa55f2a2c56b12ad7313</originalsourceid><addsrcrecordid>eNqNkU1v1DAQhi0EokvhJ4B8QvSQ4o84H1xQqbZdpJU4FA6crIkzYY2SeLGThfz7OpttOcLJmpln3teal5DXnF1yxrP3d4zxNFF5Kd8xdsGEKHkinpAVL3KZyDQrnpLVI3JGXoTwk8W64OVzcsY5V6Io1YpMt9i7zhq6_rNvnYfBup66hg47pBvsLATjusng4MZAvyOEIXyggl3S9cG14wP9A3ukHuuxr6E3E407e4g1HRy9A2N24I8qgRr0eLDBAr4kzxpoA746vefk28366_Um2X65_Xx9tU2MYrlIOIiM18gqjiClqNKqYlUDBUuhKKSUKpclK1OJjap4A0o1AoRRWcUF1Lnk8pxcLLo7aPXe2w78pB1Yvbna6rnHRFZmueCHmX27sHvvfo0YBt3ZYLBtocd4AJ2LNBqLLIJqAY13IXhsHpU503M--piPno-vGdPHfLSIe29OBmPVYf136xRIBDYL8Nu2OP2fqr5ZfxLHyTyIKc_t2evjIoXxugeLXgdjsTdYW49m0LWz__jtPfG8s2w</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>72480426</pqid></control><display><type>article</type><title>Genomic Exploration of the Hemiascomycetous Yeasts: 20. Evolution of gene redundancy compared to Saccharomyces cerevisiae</title><source>Wiley Free Content</source><source>MEDLINE</source><source>Wiley Online Library Journals Frontfile Complete</source><source>Elsevier ScienceDirect Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Alma/SFX Local Collection</source><creator>Llorente, Bertrand ; Durrens, Pascal ; Malpertuy, Alain ; Aigle, Michel ; Artiguenave, François ; Blandin, Gaëlle ; Bolotin-Fukuhara, Monique ; Bon, Elisabeth ; Brottier, Philippe ; Casaregola, Serge ; Dujon, Bernard ; de Montigny, Jacky ; Lépingle, Andrée ; Neuvéglise, Cécile ; Ozier-Kalogeropoulos, Odile ; Potier, Serge ; Saurin, William ; Tekaia, Fredj ; Toffano-Nioche, Claire ; Wésolowski-Louvel, Micheline ; Wincker, Patrick ; Weissenbach, Jean ; Souciet, Jean-Luc ; Gaillardin, Claude</creator><creatorcontrib>Llorente, Bertrand ; Durrens, Pascal ; Malpertuy, Alain ; Aigle, Michel ; Artiguenave, François ; Blandin, Gaëlle ; Bolotin-Fukuhara, Monique ; Bon, Elisabeth ; Brottier, Philippe ; Casaregola, Serge ; Dujon, Bernard ; de Montigny, Jacky ; Lépingle, Andrée ; Neuvéglise, Cécile ; Ozier-Kalogeropoulos, Odile ; Potier, Serge ; Saurin, William ; Tekaia, Fredj ; Toffano-Nioche, Claire ; Wésolowski-Louvel, Micheline ; Wincker, Patrick ; Weissenbach, Jean ; Souciet, Jean-Luc ; Gaillardin, Claude</creatorcontrib><description>We have evaluated the degree of gene redundancy in the nuclear genomes of 13 hemiascomycetous yeast species.
Saccharomyces cerevisiae singletons and gene families appear generally conserved in these species as singletons and families of similar size, respectively. Variations of the number of homologues with respect to that expected affect from 7 to less than 24% of each genome. Since
S. cerevisiae homologues represent the majority of the genes identified in the genomes studied, the overall degree of gene redundancy seems conserved across all species. This is best explained by a dynamic equilibrium resulting from numerous events of gene duplication and deletion rather than by a massive duplication event occurring in some lineages and not in others.</description><identifier>ISSN: 0014-5793</identifier><identifier>EISSN: 1873-3468</identifier><identifier>DOI: 10.1016/S0014-5793(00)02291-2</identifier><identifier>PMID: 11152895</identifier><language>eng</language><publisher>England: Elsevier B.V</publisher><subject>Ascomycota - genetics ; Base Sequence ; Cellular Biology ; Conserved Sequence ; Evolution, Molecular ; Gene deletion ; Gene duplication ; Genes, Fungal ; Genetic Variation ; Genome evolution ; Genome, Fungal ; Life Sciences ; Models, Genetic ; Multigene Family ; Orthologue ; Paralogue ; Saccharomyces cerevisiae - genetics ; Telomere - genetics</subject><ispartof>FEBS letters, 2000-12, Vol.487 (1), p.122-133</ispartof><rights>2000 Federation of European Biochemical Societies</rights><rights>FEBS Letters 487 (2000) 1873-3468 © 2015 Federation of European Biochemical Societies</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5072-1a261de0b1ea332b4bb0bfa804a8833357390943ef5b1fa55f2a2c56b12ad7313</citedby><cites>FETCH-LOGICAL-c5072-1a261de0b1ea332b4bb0bfa804a8833357390943ef5b1fa55f2a2c56b12ad7313</cites><orcidid>0000-0001-5017-7830 ; 0000-0003-4134-6844 ; 0000-0001-7562-3454 ; 0000-0002-3948-7106</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1016%2FS0014-5793%2800%2902291-2$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0014579300022912$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>230,314,776,780,881,1411,1427,3537,27901,27902,45550,45551,46384,46808,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/11152895$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.inrae.fr/hal-02696721$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Llorente, Bertrand</creatorcontrib><creatorcontrib>Durrens, Pascal</creatorcontrib><creatorcontrib>Malpertuy, Alain</creatorcontrib><creatorcontrib>Aigle, Michel</creatorcontrib><creatorcontrib>Artiguenave, François</creatorcontrib><creatorcontrib>Blandin, Gaëlle</creatorcontrib><creatorcontrib>Bolotin-Fukuhara, Monique</creatorcontrib><creatorcontrib>Bon, Elisabeth</creatorcontrib><creatorcontrib>Brottier, Philippe</creatorcontrib><creatorcontrib>Casaregola, Serge</creatorcontrib><creatorcontrib>Dujon, Bernard</creatorcontrib><creatorcontrib>de Montigny, Jacky</creatorcontrib><creatorcontrib>Lépingle, Andrée</creatorcontrib><creatorcontrib>Neuvéglise, Cécile</creatorcontrib><creatorcontrib>Ozier-Kalogeropoulos, Odile</creatorcontrib><creatorcontrib>Potier, Serge</creatorcontrib><creatorcontrib>Saurin, William</creatorcontrib><creatorcontrib>Tekaia, Fredj</creatorcontrib><creatorcontrib>Toffano-Nioche, Claire</creatorcontrib><creatorcontrib>Wésolowski-Louvel, Micheline</creatorcontrib><creatorcontrib>Wincker, Patrick</creatorcontrib><creatorcontrib>Weissenbach, Jean</creatorcontrib><creatorcontrib>Souciet, Jean-Luc</creatorcontrib><creatorcontrib>Gaillardin, Claude</creatorcontrib><title>Genomic Exploration of the Hemiascomycetous Yeasts: 20. Evolution of gene redundancy compared to Saccharomyces cerevisiae</title><title>FEBS letters</title><addtitle>FEBS Lett</addtitle><description>We have evaluated the degree of gene redundancy in the nuclear genomes of 13 hemiascomycetous yeast species.
Saccharomyces cerevisiae singletons and gene families appear generally conserved in these species as singletons and families of similar size, respectively. Variations of the number of homologues with respect to that expected affect from 7 to less than 24% of each genome. Since
S. cerevisiae homologues represent the majority of the genes identified in the genomes studied, the overall degree of gene redundancy seems conserved across all species. This is best explained by a dynamic equilibrium resulting from numerous events of gene duplication and deletion rather than by a massive duplication event occurring in some lineages and not in others.</description><subject>Ascomycota - genetics</subject><subject>Base Sequence</subject><subject>Cellular Biology</subject><subject>Conserved Sequence</subject><subject>Evolution, Molecular</subject><subject>Gene deletion</subject><subject>Gene duplication</subject><subject>Genes, Fungal</subject><subject>Genetic Variation</subject><subject>Genome evolution</subject><subject>Genome, Fungal</subject><subject>Life Sciences</subject><subject>Models, Genetic</subject><subject>Multigene Family</subject><subject>Orthologue</subject><subject>Paralogue</subject><subject>Saccharomyces cerevisiae - genetics</subject><subject>Telomere - genetics</subject><issn>0014-5793</issn><issn>1873-3468</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2000</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkU1v1DAQhi0EokvhJ4B8QvSQ4o84H1xQqbZdpJU4FA6crIkzYY2SeLGThfz7OpttOcLJmpln3teal5DXnF1yxrP3d4zxNFF5Kd8xdsGEKHkinpAVL3KZyDQrnpLVI3JGXoTwk8W64OVzcsY5V6Io1YpMt9i7zhq6_rNvnYfBup66hg47pBvsLATjusng4MZAvyOEIXyggl3S9cG14wP9A3ukHuuxr6E3E407e4g1HRy9A2N24I8qgRr0eLDBAr4kzxpoA746vefk28366_Um2X65_Xx9tU2MYrlIOIiM18gqjiClqNKqYlUDBUuhKKSUKpclK1OJjap4A0o1AoRRWcUF1Lnk8pxcLLo7aPXe2w78pB1Yvbna6rnHRFZmueCHmX27sHvvfo0YBt3ZYLBtocd4AJ2LNBqLLIJqAY13IXhsHpU503M--piPno-vGdPHfLSIe29OBmPVYf136xRIBDYL8Nu2OP2fqr5ZfxLHyTyIKc_t2evjIoXxugeLXgdjsTdYW49m0LWz__jtPfG8s2w</recordid><startdate>20001222</startdate><enddate>20001222</enddate><creator>Llorente, Bertrand</creator><creator>Durrens, Pascal</creator><creator>Malpertuy, Alain</creator><creator>Aigle, Michel</creator><creator>Artiguenave, François</creator><creator>Blandin, Gaëlle</creator><creator>Bolotin-Fukuhara, Monique</creator><creator>Bon, Elisabeth</creator><creator>Brottier, Philippe</creator><creator>Casaregola, Serge</creator><creator>Dujon, Bernard</creator><creator>de Montigny, Jacky</creator><creator>Lépingle, Andrée</creator><creator>Neuvéglise, Cécile</creator><creator>Ozier-Kalogeropoulos, Odile</creator><creator>Potier, Serge</creator><creator>Saurin, William</creator><creator>Tekaia, Fredj</creator><creator>Toffano-Nioche, Claire</creator><creator>Wésolowski-Louvel, Micheline</creator><creator>Wincker, Patrick</creator><creator>Weissenbach, Jean</creator><creator>Souciet, Jean-Luc</creator><creator>Gaillardin, Claude</creator><general>Elsevier B.V</general><general>Wiley</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>1XC</scope><orcidid>https://orcid.org/0000-0001-5017-7830</orcidid><orcidid>https://orcid.org/0000-0003-4134-6844</orcidid><orcidid>https://orcid.org/0000-0001-7562-3454</orcidid><orcidid>https://orcid.org/0000-0002-3948-7106</orcidid></search><sort><creationdate>20001222</creationdate><title>Genomic Exploration of the Hemiascomycetous Yeasts: 20. Evolution of gene redundancy compared to Saccharomyces cerevisiae</title><author>Llorente, Bertrand ; Durrens, Pascal ; Malpertuy, Alain ; Aigle, Michel ; Artiguenave, François ; Blandin, Gaëlle ; Bolotin-Fukuhara, Monique ; Bon, Elisabeth ; Brottier, Philippe ; Casaregola, Serge ; Dujon, Bernard ; de Montigny, Jacky ; Lépingle, Andrée ; Neuvéglise, Cécile ; Ozier-Kalogeropoulos, Odile ; Potier, Serge ; Saurin, William ; Tekaia, Fredj ; Toffano-Nioche, Claire ; Wésolowski-Louvel, Micheline ; Wincker, Patrick ; Weissenbach, Jean ; Souciet, Jean-Luc ; Gaillardin, Claude</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5072-1a261de0b1ea332b4bb0bfa804a8833357390943ef5b1fa55f2a2c56b12ad7313</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2000</creationdate><topic>Ascomycota - genetics</topic><topic>Base Sequence</topic><topic>Cellular Biology</topic><topic>Conserved Sequence</topic><topic>Evolution, Molecular</topic><topic>Gene deletion</topic><topic>Gene duplication</topic><topic>Genes, Fungal</topic><topic>Genetic Variation</topic><topic>Genome evolution</topic><topic>Genome, Fungal</topic><topic>Life Sciences</topic><topic>Models, Genetic</topic><topic>Multigene Family</topic><topic>Orthologue</topic><topic>Paralogue</topic><topic>Saccharomyces cerevisiae - genetics</topic><topic>Telomere - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Llorente, Bertrand</creatorcontrib><creatorcontrib>Durrens, Pascal</creatorcontrib><creatorcontrib>Malpertuy, Alain</creatorcontrib><creatorcontrib>Aigle, Michel</creatorcontrib><creatorcontrib>Artiguenave, François</creatorcontrib><creatorcontrib>Blandin, Gaëlle</creatorcontrib><creatorcontrib>Bolotin-Fukuhara, Monique</creatorcontrib><creatorcontrib>Bon, Elisabeth</creatorcontrib><creatorcontrib>Brottier, Philippe</creatorcontrib><creatorcontrib>Casaregola, Serge</creatorcontrib><creatorcontrib>Dujon, Bernard</creatorcontrib><creatorcontrib>de Montigny, Jacky</creatorcontrib><creatorcontrib>Lépingle, Andrée</creatorcontrib><creatorcontrib>Neuvéglise, Cécile</creatorcontrib><creatorcontrib>Ozier-Kalogeropoulos, Odile</creatorcontrib><creatorcontrib>Potier, Serge</creatorcontrib><creatorcontrib>Saurin, William</creatorcontrib><creatorcontrib>Tekaia, Fredj</creatorcontrib><creatorcontrib>Toffano-Nioche, Claire</creatorcontrib><creatorcontrib>Wésolowski-Louvel, Micheline</creatorcontrib><creatorcontrib>Wincker, Patrick</creatorcontrib><creatorcontrib>Weissenbach, Jean</creatorcontrib><creatorcontrib>Souciet, Jean-Luc</creatorcontrib><creatorcontrib>Gaillardin, Claude</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>FEBS letters</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Llorente, Bertrand</au><au>Durrens, Pascal</au><au>Malpertuy, Alain</au><au>Aigle, Michel</au><au>Artiguenave, François</au><au>Blandin, Gaëlle</au><au>Bolotin-Fukuhara, Monique</au><au>Bon, Elisabeth</au><au>Brottier, Philippe</au><au>Casaregola, Serge</au><au>Dujon, Bernard</au><au>de Montigny, Jacky</au><au>Lépingle, Andrée</au><au>Neuvéglise, Cécile</au><au>Ozier-Kalogeropoulos, Odile</au><au>Potier, Serge</au><au>Saurin, William</au><au>Tekaia, Fredj</au><au>Toffano-Nioche, Claire</au><au>Wésolowski-Louvel, Micheline</au><au>Wincker, Patrick</au><au>Weissenbach, Jean</au><au>Souciet, Jean-Luc</au><au>Gaillardin, Claude</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genomic Exploration of the Hemiascomycetous Yeasts: 20. Evolution of gene redundancy compared to Saccharomyces cerevisiae</atitle><jtitle>FEBS letters</jtitle><addtitle>FEBS Lett</addtitle><date>2000-12-22</date><risdate>2000</risdate><volume>487</volume><issue>1</issue><spage>122</spage><epage>133</epage><pages>122-133</pages><issn>0014-5793</issn><eissn>1873-3468</eissn><abstract>We have evaluated the degree of gene redundancy in the nuclear genomes of 13 hemiascomycetous yeast species.
Saccharomyces cerevisiae singletons and gene families appear generally conserved in these species as singletons and families of similar size, respectively. Variations of the number of homologues with respect to that expected affect from 7 to less than 24% of each genome. Since
S. cerevisiae homologues represent the majority of the genes identified in the genomes studied, the overall degree of gene redundancy seems conserved across all species. This is best explained by a dynamic equilibrium resulting from numerous events of gene duplication and deletion rather than by a massive duplication event occurring in some lineages and not in others.</abstract><cop>England</cop><pub>Elsevier B.V</pub><pmid>11152895</pmid><doi>10.1016/S0014-5793(00)02291-2</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0001-5017-7830</orcidid><orcidid>https://orcid.org/0000-0003-4134-6844</orcidid><orcidid>https://orcid.org/0000-0001-7562-3454</orcidid><orcidid>https://orcid.org/0000-0002-3948-7106</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0014-5793 |
| ispartof | FEBS letters, 2000-12, Vol.487 (1), p.122-133 |
| issn | 0014-5793 1873-3468 |
| language | eng |
| recordid | cdi_hal_primary_oai_HAL_hal_02696721v1 |
| source | Wiley Free Content; MEDLINE; Wiley Online Library Journals Frontfile Complete; Elsevier ScienceDirect Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Ascomycota - genetics Base Sequence Cellular Biology Conserved Sequence Evolution, Molecular Gene deletion Gene duplication Genes, Fungal Genetic Variation Genome evolution Genome, Fungal Life Sciences Models, Genetic Multigene Family Orthologue Paralogue Saccharomyces cerevisiae - genetics Telomere - genetics |
| title | Genomic Exploration of the Hemiascomycetous Yeasts: 20. Evolution of gene redundancy compared to Saccharomyces cerevisiae |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-31T14%3A35%3A43IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_hal_p&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Genomic%20Exploration%20of%20the%20Hemiascomycetous%20Yeasts:%2020.%20Evolution%20of%20gene%20redundancy%20compared%20to%20Saccharomyces%20cerevisiae&rft.jtitle=FEBS%20letters&rft.au=Llorente,%20Bertrand&rft.date=2000-12-22&rft.volume=487&rft.issue=1&rft.spage=122&rft.epage=133&rft.pages=122-133&rft.issn=0014-5793&rft.eissn=1873-3468&rft_id=info:doi/10.1016/S0014-5793(00)02291-2&rft_dat=%3Cproquest_hal_p%3E72480426%3C/proquest_hal_p%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=72480426&rft_id=info:pmid/11152895&rft_els_id=S0014579300022912&rfr_iscdi=true |