Intraspecific gene expression variability in the yeast Kluyveromyces lactis revealed by micro-array analysis
Using the Génolevures sequencing data, we developed an expression micro-array for the yeast Kluyveromyces lactis consisting of 482 genes, mainly involved in central metabolism, compound transport facilitators and stress response. The array was validated using the LAC/GAL system. By comparing gene ex...
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| Veröffentlicht in: | FEMS yeast research 2005-04, Vol.5 (6), p.595-604 |
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| creator | Suleau, Audrey Jacques, Noémie Reitz-Ausseur, Joëlle Casaregola, Serge |
| description | Using the
Génolevures sequencing data, we developed an expression micro-array for the yeast
Kluyveromyces lactis consisting of 482 genes, mainly involved in central metabolism, compound transport facilitators and stress response. The array was validated using the LAC/GAL system. By comparing gene expression in the laboratory reference strain CBS2359 and in an industrial strain B1, we demonstrated the influence of two carbon sources, glucose and lactose, on the expression of genes involved in the respiratory and in the fermentative metabolic pathways. We also showed that the two strains, although both originating from dairies, display unexpected differences in gene expression on each type of carbon source. |
| doi_str_mv | 10.1016/j.femsyr.2004.11.009 |
| format | Article |
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Génolevures sequencing data, we developed an expression micro-array for the yeast
Kluyveromyces lactis consisting of 482 genes, mainly involved in central metabolism, compound transport facilitators and stress response. The array was validated using the LAC/GAL system. By comparing gene expression in the laboratory reference strain CBS2359 and in an industrial strain B1, we demonstrated the influence of two carbon sources, glucose and lactose, on the expression of genes involved in the respiratory and in the fermentative metabolic pathways. We also showed that the two strains, although both originating from dairies, display unexpected differences in gene expression on each type of carbon source.</description><identifier>ISSN: 1567-1356</identifier><identifier>EISSN: 1567-1364</identifier><identifier>DOI: 10.1016/j.femsyr.2004.11.009</identifier><identifier>PMID: 15780658</identifier><language>eng</language><publisher>Oxford, UK: Elsevier B.V</publisher><subject>Carbon sources ; Cellular stress response ; Fungal Proteins - genetics ; Fungal Proteins - metabolism ; Gene expression ; Gene Expression Profiling ; Gene Expression Regulation, Fungal ; Gene expression variability ; Glucose - metabolism ; Hemiascomycetous yeasts ; Kluyveromyces - classification ; Kluyveromyces - genetics ; Kluyveromyces - metabolism ; Kluyveromyces lactis ; Lactose ; Lactose - metabolism ; Life Sciences ; Metabolic pathways ; Microbiology and Parasitology ; Oligonucleotide Array Sequence Analysis - methods ; Proteome ; Species Specificity ; Transcription, Genetic ; Transcriptome ; Yeast</subject><ispartof>FEMS yeast research, 2005-04, Vol.5 (6), p.595-604</ispartof><rights>2004 Federation of European Microbiological Societies</rights><rights>2005 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved. 2005</rights><rights>2005 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved.</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1016%2Fj.femsyr.2004.11.009$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1016%2Fj.femsyr.2004.11.009$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>230,314,776,780,881,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15780658$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.inrae.fr/hal-02679625$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Suleau, Audrey</creatorcontrib><creatorcontrib>Jacques, Noémie</creatorcontrib><creatorcontrib>Reitz-Ausseur, Joëlle</creatorcontrib><creatorcontrib>Casaregola, Serge</creatorcontrib><title>Intraspecific gene expression variability in the yeast Kluyveromyces lactis revealed by micro-array analysis</title><title>FEMS yeast research</title><addtitle>FEMS Yeast Res</addtitle><description>Using the
Génolevures sequencing data, we developed an expression micro-array for the yeast
Kluyveromyces lactis consisting of 482 genes, mainly involved in central metabolism, compound transport facilitators and stress response. The array was validated using the LAC/GAL system. By comparing gene expression in the laboratory reference strain CBS2359 and in an industrial strain B1, we demonstrated the influence of two carbon sources, glucose and lactose, on the expression of genes involved in the respiratory and in the fermentative metabolic pathways. We also showed that the two strains, although both originating from dairies, display unexpected differences in gene expression on each type of carbon source.</description><subject>Carbon sources</subject><subject>Cellular stress response</subject><subject>Fungal Proteins - genetics</subject><subject>Fungal Proteins - metabolism</subject><subject>Gene expression</subject><subject>Gene Expression Profiling</subject><subject>Gene Expression Regulation, Fungal</subject><subject>Gene expression variability</subject><subject>Glucose - metabolism</subject><subject>Hemiascomycetous yeasts</subject><subject>Kluyveromyces - classification</subject><subject>Kluyveromyces - genetics</subject><subject>Kluyveromyces - metabolism</subject><subject>Kluyveromyces lactis</subject><subject>Lactose</subject><subject>Lactose - metabolism</subject><subject>Life Sciences</subject><subject>Metabolic pathways</subject><subject>Microbiology and Parasitology</subject><subject>Oligonucleotide Array Sequence Analysis - methods</subject><subject>Proteome</subject><subject>Species Specificity</subject><subject>Transcription, Genetic</subject><subject>Transcriptome</subject><subject>Yeast</subject><issn>1567-1356</issn><issn>1567-1364</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqNkV1r1jAYhos43Jz-A5GAIHjQLmmbNDkRxnBu-MJA9MCjkCZPXV7SD5O2mn9vXjoneOB2lJBc98OdXFn2iuCCYMLO9kUHfYi-KDGuC0IKjMWT7IRQ1uSkYvXT-z1lx9nzEPYYkwZj_iw7JrThmFF-krnrYfYqTKBtZzX6DgMg-DV5CMGOA1qVt6q1zs4R2QHNt4AiqDCjT26JK_ixjxoCckrPNiAPKygHBrUR9Vb7MVfeq4jUoFwMNrzIjjrlAry8W0-zr5cfvlxc5bubj9cX57sc6prR3DAOSpSiNemhqT0DqLQRAKZhWjQt6WqNWcNEhWlHS8GF4MQYLiiQTuO6Os3ebXNvlZOTt73yUY7KyqvznTyc4ZI1gpV0JYl9u7GTH38sEGbZ26DBOTXAuATJGlrVNecPgqThpCpZmcA3_4D7cfHpC4Isq4qWNE07dHx9Ry1tD-a-5h81CeAb8NM6iH_vsTzol3u56ZcH_ZIQmfTLy2-fqaAperZFx2V6VDAl3m8JSFpWC14GbWHQYKwHPUsz2v8P-A0Xccjr</recordid><startdate>200504</startdate><enddate>200504</enddate><creator>Suleau, Audrey</creator><creator>Jacques, Noémie</creator><creator>Reitz-Ausseur, Joëlle</creator><creator>Casaregola, Serge</creator><general>Elsevier B.V</general><general>Blackwell Publishing Ltd</general><general>Oxford University Press</general><general>Oxford University Press (OUP)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>M7N</scope><scope>7X8</scope><scope>1XC</scope></search><sort><creationdate>200504</creationdate><title>Intraspecific gene expression variability in the yeast Kluyveromyces lactis revealed by micro-array analysis</title><author>Suleau, Audrey ; 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Génolevures sequencing data, we developed an expression micro-array for the yeast
Kluyveromyces lactis consisting of 482 genes, mainly involved in central metabolism, compound transport facilitators and stress response. The array was validated using the LAC/GAL system. By comparing gene expression in the laboratory reference strain CBS2359 and in an industrial strain B1, we demonstrated the influence of two carbon sources, glucose and lactose, on the expression of genes involved in the respiratory and in the fermentative metabolic pathways. We also showed that the two strains, although both originating from dairies, display unexpected differences in gene expression on each type of carbon source.</abstract><cop>Oxford, UK</cop><pub>Elsevier B.V</pub><pmid>15780658</pmid><doi>10.1016/j.femsyr.2004.11.009</doi><tpages>10</tpages></addata></record> |
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| subjects | Carbon sources Cellular stress response Fungal Proteins - genetics Fungal Proteins - metabolism Gene expression Gene Expression Profiling Gene Expression Regulation, Fungal Gene expression variability Glucose - metabolism Hemiascomycetous yeasts Kluyveromyces - classification Kluyveromyces - genetics Kluyveromyces - metabolism Kluyveromyces lactis Lactose Lactose - metabolism Life Sciences Metabolic pathways Microbiology and Parasitology Oligonucleotide Array Sequence Analysis - methods Proteome Species Specificity Transcription, Genetic Transcriptome Yeast |
| title | Intraspecific gene expression variability in the yeast Kluyveromyces lactis revealed by micro-array analysis |
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