Asian prunus viruses: New related members of the family Flexiviridae in Prunus germplasm of Asian origin
Serological reactivity to Plum pox virus (PPV) antisera has been described in several Prunus sources of Asian origin that are free of PPV infection. Using polyvalent or specific PCR assays, the presence of three closely related agents in two of these sources, Prunus mume cv. Bungo and P. persica cv....
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| Veröffentlicht in: | Virus research 2006-09, Vol.120 (1), p.176-183 |
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| creator | Marais, A. Svanella-Dumas, L. Foissac, X. Gentit, P. Candresse, T. |
| description | Serological reactivity to
Plum pox virus (PPV) antisera has been described in several
Prunus sources of Asian origin that are free of PPV infection. Using polyvalent or specific PCR assays, the presence of three closely related agents in two of these sources,
Prunus mume cv. Bungo and
P. persica cv. Ku Chu’a Hung, was demonstrated. Similarities in genome organization and sequence comparisons indicate that these agents should be regarded as members of the genus
Foveavirus, their only singular trait being a very large (>800
nt) 3′ non-coding region (NCR), as compared to the ca. 130–180
nt 3′ NCR observed in other Foveaviruses. The three agents are very divergent from known Foveaviruses but are also significantly removed one from the others, with overall nucleotide sequence identity levels in the sequenced region of ca. 74–76% and of only 60.8–67.5% in their complete CP gene (61.9–71.3% amino acid sequence identity). Given the species discrimination criteria in the family
Flexiviridae, these three agents should be regarded as three related yet distinct new viruses belonging to the
Foveavirus genus, for which the names Asian prunus virus 1, 2 and 3 are proposed. Evidence is provided for the presence of variants of these new viruses in other
Prunus germplasm of Asian origin. |
| doi_str_mv | 10.1016/j.virusres.2006.03.004 |
| format | Article |
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Plum pox virus (PPV) antisera has been described in several
Prunus sources of Asian origin that are free of PPV infection. Using polyvalent or specific PCR assays, the presence of three closely related agents in two of these sources,
Prunus mume cv. Bungo and
P. persica cv. Ku Chu’a Hung, was demonstrated. Similarities in genome organization and sequence comparisons indicate that these agents should be regarded as members of the genus
Foveavirus, their only singular trait being a very large (>800
nt) 3′ non-coding region (NCR), as compared to the ca. 130–180
nt 3′ NCR observed in other Foveaviruses. The three agents are very divergent from known Foveaviruses but are also significantly removed one from the others, with overall nucleotide sequence identity levels in the sequenced region of ca. 74–76% and of only 60.8–67.5% in their complete CP gene (61.9–71.3% amino acid sequence identity). Given the species discrimination criteria in the family
Flexiviridae, these three agents should be regarded as three related yet distinct new viruses belonging to the
Foveavirus genus, for which the names Asian prunus virus 1, 2 and 3 are proposed. Evidence is provided for the presence of variants of these new viruses in other
Prunus germplasm of Asian origin.</description><identifier>ISSN: 0168-1702</identifier><identifier>EISSN: 1872-7492</identifier><identifier>DOI: 10.1016/j.virusres.2006.03.004</identifier><identifier>PMID: 16621102</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Amino Acid Sequence ; Asia ; Capsid Proteins - genetics ; Flexiviridae ; Foveavirus ; Genes, Viral ; Genome ; Genome, Viral ; Life Sciences ; Microbiology and Parasitology ; Molecular Sequence Data ; Plant Diseases - virology ; Plant Viruses - classification ; Plant Viruses - genetics ; Plum pox virus ; Prunus ; Prunus - virology ; Prunus mume ; Sequence Alignment ; Sequence Homology, Amino Acid ; Sequence Homology, Nucleic Acid ; Virology</subject><ispartof>Virus research, 2006-09, Vol.120 (1), p.176-183</ispartof><rights>2006 Elsevier B.V.</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c431t-b63739549d2fc4a8413b989814299a019db6a2b6b5ed8035121fb51d8474fdf53</citedby><cites>FETCH-LOGICAL-c431t-b63739549d2fc4a8413b989814299a019db6a2b6b5ed8035121fb51d8474fdf53</cites><orcidid>0000-0003-2482-1543 ; 0000-0001-9757-1835 ; 0000-0002-2170-5793</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.virusres.2006.03.004$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>230,314,780,784,885,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16621102$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.inrae.fr/hal-02665693$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Marais, A.</creatorcontrib><creatorcontrib>Svanella-Dumas, L.</creatorcontrib><creatorcontrib>Foissac, X.</creatorcontrib><creatorcontrib>Gentit, P.</creatorcontrib><creatorcontrib>Candresse, T.</creatorcontrib><title>Asian prunus viruses: New related members of the family Flexiviridae in Prunus germplasm of Asian origin</title><title>Virus research</title><addtitle>Virus Res</addtitle><description>Serological reactivity to
Plum pox virus (PPV) antisera has been described in several
Prunus sources of Asian origin that are free of PPV infection. Using polyvalent or specific PCR assays, the presence of three closely related agents in two of these sources,
Prunus mume cv. Bungo and
P. persica cv. Ku Chu’a Hung, was demonstrated. Similarities in genome organization and sequence comparisons indicate that these agents should be regarded as members of the genus
Foveavirus, their only singular trait being a very large (>800
nt) 3′ non-coding region (NCR), as compared to the ca. 130–180
nt 3′ NCR observed in other Foveaviruses. The three agents are very divergent from known Foveaviruses but are also significantly removed one from the others, with overall nucleotide sequence identity levels in the sequenced region of ca. 74–76% and of only 60.8–67.5% in their complete CP gene (61.9–71.3% amino acid sequence identity). Given the species discrimination criteria in the family
Flexiviridae, these three agents should be regarded as three related yet distinct new viruses belonging to the
Foveavirus genus, for which the names Asian prunus virus 1, 2 and 3 are proposed. Evidence is provided for the presence of variants of these new viruses in other
Prunus germplasm of Asian origin.</description><subject>Amino Acid Sequence</subject><subject>Asia</subject><subject>Capsid Proteins - genetics</subject><subject>Flexiviridae</subject><subject>Foveavirus</subject><subject>Genes, Viral</subject><subject>Genome</subject><subject>Genome, Viral</subject><subject>Life Sciences</subject><subject>Microbiology and Parasitology</subject><subject>Molecular Sequence Data</subject><subject>Plant Diseases - virology</subject><subject>Plant Viruses - classification</subject><subject>Plant Viruses - genetics</subject><subject>Plum pox virus</subject><subject>Prunus</subject><subject>Prunus - virology</subject><subject>Prunus mume</subject><subject>Sequence Alignment</subject><subject>Sequence Homology, Amino Acid</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>Virology</subject><issn>0168-1702</issn><issn>1872-7492</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU1v1DAQhi0EotvCX6h8QuKQMLYTx-bEquoH0gp6KGfLiSddr_Kx2MlC_329ZIFjTyONnnlnNA8hlwxyBkx-2uUHH-YYMOYcQOYgcoDiFVkxVfGsKjR_TVYJVBmrgJ-R8xh3kEBRybfkjEnJGQO-Itt19Hag-zAPc6R_MjF-pt_wFw3Y2Qkd7bGvMUQ6tnTaIm1t77snetPhb5947yxSP9D7JeERQ7_vbOyP-JI9Bv_oh3fkTWu7iO9P9YL8uLl-uLrLNt9vv16tN1lTCDZldbpQ6LLQjrdNYVXBRK2VVqzgWltg2tXS8lrWJToFomSctXXJnCqqonVtKS7IxyV3azuzD7634cmM1pu79cYce8ClLKUWB5bYDwu7D-PPGeNkeh8b7Do74DhHI5UErgW8CLKKS9ClSqBcwCaMMdlp_53AwBzFmZ35K84cxRkQJolLg5enDXPdo_s_djKVgC8LgOl5B4_BxMbj0KDzAZvJuNG_tOMZZpusuA</recordid><startdate>20060901</startdate><enddate>20060901</enddate><creator>Marais, A.</creator><creator>Svanella-Dumas, L.</creator><creator>Foissac, X.</creator><creator>Gentit, P.</creator><creator>Candresse, T.</creator><general>Elsevier B.V</general><general>Elsevier</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7U9</scope><scope>H94</scope><scope>7X8</scope><scope>1XC</scope><orcidid>https://orcid.org/0000-0003-2482-1543</orcidid><orcidid>https://orcid.org/0000-0001-9757-1835</orcidid><orcidid>https://orcid.org/0000-0002-2170-5793</orcidid></search><sort><creationdate>20060901</creationdate><title>Asian prunus viruses: New related members of the family Flexiviridae in Prunus germplasm of Asian origin</title><author>Marais, A. ; Svanella-Dumas, L. ; Foissac, X. ; Gentit, P. ; Candresse, T.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c431t-b63739549d2fc4a8413b989814299a019db6a2b6b5ed8035121fb51d8474fdf53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>Amino Acid Sequence</topic><topic>Asia</topic><topic>Capsid Proteins - genetics</topic><topic>Flexiviridae</topic><topic>Foveavirus</topic><topic>Genes, Viral</topic><topic>Genome</topic><topic>Genome, Viral</topic><topic>Life Sciences</topic><topic>Microbiology and Parasitology</topic><topic>Molecular Sequence Data</topic><topic>Plant Diseases - virology</topic><topic>Plant Viruses - classification</topic><topic>Plant Viruses - genetics</topic><topic>Plum pox virus</topic><topic>Prunus</topic><topic>Prunus - virology</topic><topic>Prunus mume</topic><topic>Sequence Alignment</topic><topic>Sequence Homology, Amino Acid</topic><topic>Sequence Homology, Nucleic Acid</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Marais, A.</creatorcontrib><creatorcontrib>Svanella-Dumas, L.</creatorcontrib><creatorcontrib>Foissac, X.</creatorcontrib><creatorcontrib>Gentit, P.</creatorcontrib><creatorcontrib>Candresse, T.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Virology and AIDS Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>Virus research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Marais, A.</au><au>Svanella-Dumas, L.</au><au>Foissac, X.</au><au>Gentit, P.</au><au>Candresse, T.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Asian prunus viruses: New related members of the family Flexiviridae in Prunus germplasm of Asian origin</atitle><jtitle>Virus research</jtitle><addtitle>Virus Res</addtitle><date>2006-09-01</date><risdate>2006</risdate><volume>120</volume><issue>1</issue><spage>176</spage><epage>183</epage><pages>176-183</pages><issn>0168-1702</issn><eissn>1872-7492</eissn><abstract>Serological reactivity to
Plum pox virus (PPV) antisera has been described in several
Prunus sources of Asian origin that are free of PPV infection. Using polyvalent or specific PCR assays, the presence of three closely related agents in two of these sources,
Prunus mume cv. Bungo and
P. persica cv. Ku Chu’a Hung, was demonstrated. Similarities in genome organization and sequence comparisons indicate that these agents should be regarded as members of the genus
Foveavirus, their only singular trait being a very large (>800
nt) 3′ non-coding region (NCR), as compared to the ca. 130–180
nt 3′ NCR observed in other Foveaviruses. The three agents are very divergent from known Foveaviruses but are also significantly removed one from the others, with overall nucleotide sequence identity levels in the sequenced region of ca. 74–76% and of only 60.8–67.5% in their complete CP gene (61.9–71.3% amino acid sequence identity). Given the species discrimination criteria in the family
Flexiviridae, these three agents should be regarded as three related yet distinct new viruses belonging to the
Foveavirus genus, for which the names Asian prunus virus 1, 2 and 3 are proposed. Evidence is provided for the presence of variants of these new viruses in other
Prunus germplasm of Asian origin.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>16621102</pmid><doi>10.1016/j.virusres.2006.03.004</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0003-2482-1543</orcidid><orcidid>https://orcid.org/0000-0001-9757-1835</orcidid><orcidid>https://orcid.org/0000-0002-2170-5793</orcidid></addata></record> |
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| source | MEDLINE; Elsevier ScienceDirect Journals Complete |
| subjects | Amino Acid Sequence Asia Capsid Proteins - genetics Flexiviridae Foveavirus Genes, Viral Genome Genome, Viral Life Sciences Microbiology and Parasitology Molecular Sequence Data Plant Diseases - virology Plant Viruses - classification Plant Viruses - genetics Plum pox virus Prunus Prunus - virology Prunus mume Sequence Alignment Sequence Homology, Amino Acid Sequence Homology, Nucleic Acid Virology |
| title | Asian prunus viruses: New related members of the family Flexiviridae in Prunus germplasm of Asian origin |
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