Response of total and nitrate-dissimilating bacteria to reduced N deposition in a spruce forest soil profile

A field-scale manipulation experiment conducted for 16 years in a Norway spruce forest at Solling, Central Germany, was used to follow the long-term response of total soil bacteria, nitrate reducers and denitrifiers under conditions of reduced N deposition. N was experimentally removed from throughf...

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Veröffentlicht in:FEMS microbiology ecology 2009-03, Vol.67 (3), p.444-454
Hauptverfasser: Kandeler, Ellen, Brune, Thomas, Enowashu, Esther, Dörr, Nicole, Guggenberger, Georg, Lamersdorf, Norbert, Philippot, Laurent
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container_issue 3
container_start_page 444
container_title FEMS microbiology ecology
container_volume 67
creator Kandeler, Ellen
Brune, Thomas
Enowashu, Esther
Dörr, Nicole
Guggenberger, Georg
Lamersdorf, Norbert
Philippot, Laurent
description A field-scale manipulation experiment conducted for 16 years in a Norway spruce forest at Solling, Central Germany, was used to follow the long-term response of total soil bacteria, nitrate reducers and denitrifiers under conditions of reduced N deposition. N was experimentally removed from throughfall by a roof construction ('clean rain plot'). We used substrate-induced respiration (SIR) to characterize the active fraction of soil microbial biomass and potential nitrate reduction to quantify the activity of nitrate reducers. The abundance of total bacteria, nitrate reducers and denitrifiers in different soil layers was analysed by quantitative PCR of 16S rRNA gene, nitrate reduction and denitrification genes. Reduced N deposition temporarily affected the active fraction of the total microbial community (SIR) as well as nitrate reductase activity. However, the size of the total, nitrate reducer and denitrifier communities did not respond to reduced N deposition. Soil depth and sampling date had a greater influence on the density and activity of soil microorganisms than reduced deposition. An increase in the nosZ/16S rRNA gene and nosZ/nirK ratios with soil depth suggests that the proportion of denitrifiers capable of reducing N₂O into N₂ is larger in the mineral soil layer than in the organic layer.
doi_str_mv 10.1111/j.1574-6941.2008.00632.x
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N was experimentally removed from throughfall by a roof construction ('clean rain plot'). We used substrate-induced respiration (SIR) to characterize the active fraction of soil microbial biomass and potential nitrate reduction to quantify the activity of nitrate reducers. The abundance of total bacteria, nitrate reducers and denitrifiers in different soil layers was analysed by quantitative PCR of 16S rRNA gene, nitrate reduction and denitrification genes. Reduced N deposition temporarily affected the active fraction of the total microbial community (SIR) as well as nitrate reductase activity. However, the size of the total, nitrate reducer and denitrifier communities did not respond to reduced N deposition. Soil depth and sampling date had a greater influence on the density and activity of soil microorganisms than reduced deposition. An increase in the nosZ/16S rRNA gene and nosZ/nirK ratios with soil depth suggests that the proportion of denitrifiers capable of reducing N₂O into N₂ is larger in the mineral soil layer than in the organic layer.</description><identifier>ISSN: 0168-6496</identifier><identifier>EISSN: 1574-6941</identifier><identifier>DOI: 10.1111/j.1574-6941.2008.00632.x</identifier><identifier>PMID: 19220860</identifier><language>eng</language><publisher>Oxford, UK: Oxford, UK : Blackwell Publishing Ltd</publisher><subject>16S rRNA gene ; Animal, plant and microbial ecology ; Bacteria ; Bacteria - genetics ; Bacteria - metabolism ; Biological and medical sciences ; Biomarkers ; Biomass ; clean rain ; Coniferous forests ; Denitrification ; denitrifiers ; Deposition ; DNA, Bacterial - genetics ; Ecology ; Ecosystem ; forest soil ; Forest soils ; Forests ; Fundamental and applied biological sciences. Psychology ; Genes, Bacterial ; Genes, rRNA ; Life Sciences ; Microbial ecology ; Microbiology ; Microbiology and Parasitology ; Microorganisms ; N deposition ; NirK protein ; nitrate reducers ; Nitrate reductase ; Nitrate Reductase - metabolism ; Nitrate reduction ; Nitrates ; Nitrates - metabolism ; Nitrous oxide ; Norway ; Picea - microbiology ; Picea abies ; Pine trees ; Reductases ; Reduction ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Soil - analysis ; Soil bacteria ; Soil depth ; Soil layers ; Soil Microbiology ; Soil microorganisms ; Soil profiles ; Soil properties ; Soils ; Substrates ; Throughfall ; Trees - microbiology</subject><ispartof>FEMS microbiology ecology, 2009-03, Vol.67 (3), p.444-454</ispartof><rights>2009 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved 2009</rights><rights>2008 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. 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subjects 16S rRNA gene
Animal, plant and microbial ecology
Bacteria
Bacteria - genetics
Bacteria - metabolism
Biological and medical sciences
Biomarkers
Biomass
clean rain
Coniferous forests
Denitrification
denitrifiers
Deposition
DNA, Bacterial - genetics
Ecology
Ecosystem
forest soil
Forest soils
Forests
Fundamental and applied biological sciences. Psychology
Genes, Bacterial
Genes, rRNA
Life Sciences
Microbial ecology
Microbiology
Microbiology and Parasitology
Microorganisms
N deposition
NirK protein
nitrate reducers
Nitrate reductase
Nitrate Reductase - metabolism
Nitrate reduction
Nitrates
Nitrates - metabolism
Nitrous oxide
Norway
Picea - microbiology
Picea abies
Pine trees
Reductases
Reduction
RNA, Ribosomal, 16S - genetics
rRNA 16S
Soil - analysis
Soil bacteria
Soil depth
Soil layers
Soil Microbiology
Soil microorganisms
Soil profiles
Soil properties
Soils
Substrates
Throughfall
Trees - microbiology
title Response of total and nitrate-dissimilating bacteria to reduced N deposition in a spruce forest soil profile
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