Combined use of local and ANOVA-based global sensitivity analyses for the investigation of a stochastic dynamic model: Application to the case study of an individual-based model of a fish population
Global methods based on variance decomposition are increasingly being used for sensitivity analysis (SA). Of these, analysis of variance (ANOVA) is surprisingly rarely employed. Yet, it is a viable alternative to other model-free methods, as it gives comparable results and is readily available in mo...
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Veröffentlicht in: | Ecological modelling 2006-03, Vol.193 (3), p.479-491 |
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description | Global methods based on variance decomposition are increasingly being used for sensitivity analysis (SA). Of these, analysis of variance (ANOVA) is surprisingly rarely employed. Yet, it is a viable alternative to other model-free methods, as it gives comparable results and is readily available in most statistical packages. Furthermore, decomposing the input factors of ANOVA into orthogonal polynomial effects gives additional insights into the way a parameter impacts on model output (linear, quadratic and cubic). However, using global methods should not lead modellers to forego local methods, which provide additional information, as, for example, time course analysis of local sensitivity coefficients. We illustrate the use of these techniques, particularly ANOVA, on a stochastic individual-based model of a mosquitofish (
Gambusia holbrooki) population in experimental tanks. Local SA led to unexpected and counter-intuitive results, indicating that the model output (population size) was much more sensitive to the fecundity threshold (length at first parturition) than to the fecundity parameter (brood size). Time course analysis of local coefficients suggested that, as far as calibration is concerned, it would probably be impossible to determine more than two parameters on the sole records of the population size in time. Global SA (ANOVA) was targeted to assess which processes had an impact on the model outcome in our experimental conditions, by exploring the parameter space over the entire biological range of all parameters. It showed that parameters had mainly linear and additive effects (few interactions) on the output in a logarithmic scale, and that the main processes involved in population growth were individual growth and adult survival, followed by the breeding process. Juvenile survival had a lesser impact. |
doi_str_mv | 10.1016/j.ecolmodel.2005.08.025 |
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Gambusia holbrooki) population in experimental tanks. Local SA led to unexpected and counter-intuitive results, indicating that the model output (population size) was much more sensitive to the fecundity threshold (length at first parturition) than to the fecundity parameter (brood size). Time course analysis of local coefficients suggested that, as far as calibration is concerned, it would probably be impossible to determine more than two parameters on the sole records of the population size in time. Global SA (ANOVA) was targeted to assess which processes had an impact on the model outcome in our experimental conditions, by exploring the parameter space over the entire biological range of all parameters. It showed that parameters had mainly linear and additive effects (few interactions) on the output in a logarithmic scale, and that the main processes involved in population growth were individual growth and adult survival, followed by the breeding process. Juvenile survival had a lesser impact.</description><identifier>ISSN: 0304-3800</identifier><identifier>EISSN: 1872-7026</identifier><identifier>DOI: 10.1016/j.ecolmodel.2005.08.025</identifier><identifier>CODEN: ECMODT</identifier><language>eng</language><publisher>Amsterdam: Elsevier B.V</publisher><subject>Agnatha. Pisces ; Animal, plant and microbial ecology ; ANOVA ; Biodiversity and Ecology ; Biological and medical sciences ; Computer experiments ; Environmental Sciences ; Fundamental and applied biological sciences. Psychology ; Gambusia holbrooki ; General aspects. Techniques ; Methods and techniques (sampling, tagging, trapping, modelling...) ; Sensitivity analysis ; Simulation design ; Stochastic individual-based model ; Vertebrates: general zoology, morphology, phylogeny, systematics, cytogenetics, geographical distribution</subject><ispartof>Ecological modelling, 2006-03, Vol.193 (3), p.479-491</ispartof><rights>2005 Elsevier B.V.</rights><rights>2006 INIST-CNRS</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c410t-a6fa586801546355b006b5c9b006106cff4d027d0abf53fabc19fde7eea6c5113</citedby><cites>FETCH-LOGICAL-c410t-a6fa586801546355b006b5c9b006106cff4d027d0abf53fabc19fde7eea6c5113</cites><orcidid>0000-0002-2855-1571 ; 0000-0001-8225-495X ; 0000-0002-7145-6713</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.ecolmodel.2005.08.025$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>230,314,780,784,885,3548,27922,27923,45993</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=17542724$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.inrae.fr/hal-02659283$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Ginot, Vincent</creatorcontrib><creatorcontrib>Gaba, Sabrina</creatorcontrib><creatorcontrib>Beaudouin, Rémy</creatorcontrib><creatorcontrib>Aries, Franck</creatorcontrib><creatorcontrib>Monod, Hervé</creatorcontrib><title>Combined use of local and ANOVA-based global sensitivity analyses for the investigation of a stochastic dynamic model: Application to the case study of an individual-based model of a fish population</title><title>Ecological modelling</title><description>Global methods based on variance decomposition are increasingly being used for sensitivity analysis (SA). Of these, analysis of variance (ANOVA) is surprisingly rarely employed. Yet, it is a viable alternative to other model-free methods, as it gives comparable results and is readily available in most statistical packages. Furthermore, decomposing the input factors of ANOVA into orthogonal polynomial effects gives additional insights into the way a parameter impacts on model output (linear, quadratic and cubic). However, using global methods should not lead modellers to forego local methods, which provide additional information, as, for example, time course analysis of local sensitivity coefficients. We illustrate the use of these techniques, particularly ANOVA, on a stochastic individual-based model of a mosquitofish (
Gambusia holbrooki) population in experimental tanks. Local SA led to unexpected and counter-intuitive results, indicating that the model output (population size) was much more sensitive to the fecundity threshold (length at first parturition) than to the fecundity parameter (brood size). Time course analysis of local coefficients suggested that, as far as calibration is concerned, it would probably be impossible to determine more than two parameters on the sole records of the population size in time. Global SA (ANOVA) was targeted to assess which processes had an impact on the model outcome in our experimental conditions, by exploring the parameter space over the entire biological range of all parameters. It showed that parameters had mainly linear and additive effects (few interactions) on the output in a logarithmic scale, and that the main processes involved in population growth were individual growth and adult survival, followed by the breeding process. Juvenile survival had a lesser impact.</description><subject>Agnatha. Pisces</subject><subject>Animal, plant and microbial ecology</subject><subject>ANOVA</subject><subject>Biodiversity and Ecology</subject><subject>Biological and medical sciences</subject><subject>Computer experiments</subject><subject>Environmental Sciences</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gambusia holbrooki</subject><subject>General aspects. 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Pisces</topic><topic>Animal, plant and microbial ecology</topic><topic>ANOVA</topic><topic>Biodiversity and Ecology</topic><topic>Biological and medical sciences</topic><topic>Computer experiments</topic><topic>Environmental Sciences</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gambusia holbrooki</topic><topic>General aspects. Techniques</topic><topic>Methods and techniques (sampling, tagging, trapping, modelling...)</topic><topic>Sensitivity analysis</topic><topic>Simulation design</topic><topic>Stochastic individual-based model</topic><topic>Vertebrates: general zoology, morphology, phylogeny, systematics, cytogenetics, geographical distribution</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ginot, Vincent</creatorcontrib><creatorcontrib>Gaba, Sabrina</creatorcontrib><creatorcontrib>Beaudouin, Rémy</creatorcontrib><creatorcontrib>Aries, Franck</creatorcontrib><creatorcontrib>Monod, Hervé</creatorcontrib><collection>Pascal-Francis</collection><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Environment Abstracts</collection><collection>Sustainability Science Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>Ecological modelling</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ginot, Vincent</au><au>Gaba, Sabrina</au><au>Beaudouin, Rémy</au><au>Aries, Franck</au><au>Monod, Hervé</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Combined use of local and ANOVA-based global sensitivity analyses for the investigation of a stochastic dynamic model: Application to the case study of an individual-based model of a fish population</atitle><jtitle>Ecological modelling</jtitle><date>2006-03-15</date><risdate>2006</risdate><volume>193</volume><issue>3</issue><spage>479</spage><epage>491</epage><pages>479-491</pages><issn>0304-3800</issn><eissn>1872-7026</eissn><coden>ECMODT</coden><abstract>Global methods based on variance decomposition are increasingly being used for sensitivity analysis (SA). Of these, analysis of variance (ANOVA) is surprisingly rarely employed. Yet, it is a viable alternative to other model-free methods, as it gives comparable results and is readily available in most statistical packages. Furthermore, decomposing the input factors of ANOVA into orthogonal polynomial effects gives additional insights into the way a parameter impacts on model output (linear, quadratic and cubic). However, using global methods should not lead modellers to forego local methods, which provide additional information, as, for example, time course analysis of local sensitivity coefficients. We illustrate the use of these techniques, particularly ANOVA, on a stochastic individual-based model of a mosquitofish (
Gambusia holbrooki) population in experimental tanks. Local SA led to unexpected and counter-intuitive results, indicating that the model output (population size) was much more sensitive to the fecundity threshold (length at first parturition) than to the fecundity parameter (brood size). Time course analysis of local coefficients suggested that, as far as calibration is concerned, it would probably be impossible to determine more than two parameters on the sole records of the population size in time. Global SA (ANOVA) was targeted to assess which processes had an impact on the model outcome in our experimental conditions, by exploring the parameter space over the entire biological range of all parameters. It showed that parameters had mainly linear and additive effects (few interactions) on the output in a logarithmic scale, and that the main processes involved in population growth were individual growth and adult survival, followed by the breeding process. Juvenile survival had a lesser impact.</abstract><cop>Amsterdam</cop><pub>Elsevier B.V</pub><doi>10.1016/j.ecolmodel.2005.08.025</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0002-2855-1571</orcidid><orcidid>https://orcid.org/0000-0001-8225-495X</orcidid><orcidid>https://orcid.org/0000-0002-7145-6713</orcidid></addata></record> |
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subjects | Agnatha. Pisces Animal, plant and microbial ecology ANOVA Biodiversity and Ecology Biological and medical sciences Computer experiments Environmental Sciences Fundamental and applied biological sciences. Psychology Gambusia holbrooki General aspects. Techniques Methods and techniques (sampling, tagging, trapping, modelling...) Sensitivity analysis Simulation design Stochastic individual-based model Vertebrates: general zoology, morphology, phylogeny, systematics, cytogenetics, geographical distribution |
title | Combined use of local and ANOVA-based global sensitivity analyses for the investigation of a stochastic dynamic model: Application to the case study of an individual-based model of a fish population |
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