Combined use of local and ANOVA-based global sensitivity analyses for the investigation of a stochastic dynamic model: Application to the case study of an individual-based model of a fish population

Global methods based on variance decomposition are increasingly being used for sensitivity analysis (SA). Of these, analysis of variance (ANOVA) is surprisingly rarely employed. Yet, it is a viable alternative to other model-free methods, as it gives comparable results and is readily available in mo...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Ecological modelling 2006-03, Vol.193 (3), p.479-491
Hauptverfasser: Ginot, Vincent, Gaba, Sabrina, Beaudouin, Rémy, Aries, Franck, Monod, Hervé
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 491
container_issue 3
container_start_page 479
container_title Ecological modelling
container_volume 193
creator Ginot, Vincent
Gaba, Sabrina
Beaudouin, Rémy
Aries, Franck
Monod, Hervé
description Global methods based on variance decomposition are increasingly being used for sensitivity analysis (SA). Of these, analysis of variance (ANOVA) is surprisingly rarely employed. Yet, it is a viable alternative to other model-free methods, as it gives comparable results and is readily available in most statistical packages. Furthermore, decomposing the input factors of ANOVA into orthogonal polynomial effects gives additional insights into the way a parameter impacts on model output (linear, quadratic and cubic). However, using global methods should not lead modellers to forego local methods, which provide additional information, as, for example, time course analysis of local sensitivity coefficients. We illustrate the use of these techniques, particularly ANOVA, on a stochastic individual-based model of a mosquitofish ( Gambusia holbrooki) population in experimental tanks. Local SA led to unexpected and counter-intuitive results, indicating that the model output (population size) was much more sensitive to the fecundity threshold (length at first parturition) than to the fecundity parameter (brood size). Time course analysis of local coefficients suggested that, as far as calibration is concerned, it would probably be impossible to determine more than two parameters on the sole records of the population size in time. Global SA (ANOVA) was targeted to assess which processes had an impact on the model outcome in our experimental conditions, by exploring the parameter space over the entire biological range of all parameters. It showed that parameters had mainly linear and additive effects (few interactions) on the output in a logarithmic scale, and that the main processes involved in population growth were individual growth and adult survival, followed by the breeding process. Juvenile survival had a lesser impact.
doi_str_mv 10.1016/j.ecolmodel.2005.08.025
format Article
fullrecord <record><control><sourceid>proquest_hal_p</sourceid><recordid>TN_cdi_hal_primary_oai_HAL_hal_02659283v1</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0304380005004084</els_id><sourcerecordid>19421453</sourcerecordid><originalsourceid>FETCH-LOGICAL-c410t-a6fa586801546355b006b5c9b006106cff4d027d0abf53fabc19fde7eea6c5113</originalsourceid><addsrcrecordid>eNqFkc2O1DAQhCMEEsPCM-ALSBwS2k6cZLhFI2CRRuwFuFod_-x45IlDnIyUF-S5cJLRcuTUUvurKqsrSd5SyCjQ8uM509K7i1faZQyAZ1BnwPizZEfriqUVsPJ5soMcijSvAV4mr0I4AwBlNdslfw7-0tpOKzIFTbwhzkt0BDtFmu8Pv5q0xRAfH51v4zroLtjRXu04RwTdHHQgxg9kPGliu6sOo33E0fpusUISRi9PGJeSqLnDS5zrRz-Rpu-dlRs6-lUvY1JUTGpexV00VDFKTehuv1i1m7Ox4UR6309u9XidvDDogn5zm3fJzy-ffxzu0-PD12-H5pjKgsKYYmmQ12UNlBdlznkLULZc7pdJoZTGFApYpQBbw3ODraR7o3SlNZaSU5rfJR823xM60Q_2gsMsPFpx3xzFsovX5ntW59eFfb-x_eB_T_E04mKD1M5hp_0UBN0XjBY8j2C1gXLwIQzaPDlTEEvH4iyeOhZLxwLqmMSj8t0tAkOszQzYSRv-yStesIoVkWs2TsfbXK0eRJBWd1IrO2g5CuXtf7P-AtSSxJQ</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>19421453</pqid></control><display><type>article</type><title>Combined use of local and ANOVA-based global sensitivity analyses for the investigation of a stochastic dynamic model: Application to the case study of an individual-based model of a fish population</title><source>Elsevier ScienceDirect Journals Complete</source><creator>Ginot, Vincent ; Gaba, Sabrina ; Beaudouin, Rémy ; Aries, Franck ; Monod, Hervé</creator><creatorcontrib>Ginot, Vincent ; Gaba, Sabrina ; Beaudouin, Rémy ; Aries, Franck ; Monod, Hervé</creatorcontrib><description>Global methods based on variance decomposition are increasingly being used for sensitivity analysis (SA). Of these, analysis of variance (ANOVA) is surprisingly rarely employed. Yet, it is a viable alternative to other model-free methods, as it gives comparable results and is readily available in most statistical packages. Furthermore, decomposing the input factors of ANOVA into orthogonal polynomial effects gives additional insights into the way a parameter impacts on model output (linear, quadratic and cubic). However, using global methods should not lead modellers to forego local methods, which provide additional information, as, for example, time course analysis of local sensitivity coefficients. We illustrate the use of these techniques, particularly ANOVA, on a stochastic individual-based model of a mosquitofish ( Gambusia holbrooki) population in experimental tanks. Local SA led to unexpected and counter-intuitive results, indicating that the model output (population size) was much more sensitive to the fecundity threshold (length at first parturition) than to the fecundity parameter (brood size). Time course analysis of local coefficients suggested that, as far as calibration is concerned, it would probably be impossible to determine more than two parameters on the sole records of the population size in time. Global SA (ANOVA) was targeted to assess which processes had an impact on the model outcome in our experimental conditions, by exploring the parameter space over the entire biological range of all parameters. It showed that parameters had mainly linear and additive effects (few interactions) on the output in a logarithmic scale, and that the main processes involved in population growth were individual growth and adult survival, followed by the breeding process. Juvenile survival had a lesser impact.</description><identifier>ISSN: 0304-3800</identifier><identifier>EISSN: 1872-7026</identifier><identifier>DOI: 10.1016/j.ecolmodel.2005.08.025</identifier><identifier>CODEN: ECMODT</identifier><language>eng</language><publisher>Amsterdam: Elsevier B.V</publisher><subject>Agnatha. Pisces ; Animal, plant and microbial ecology ; ANOVA ; Biodiversity and Ecology ; Biological and medical sciences ; Computer experiments ; Environmental Sciences ; Fundamental and applied biological sciences. Psychology ; Gambusia holbrooki ; General aspects. Techniques ; Methods and techniques (sampling, tagging, trapping, modelling...) ; Sensitivity analysis ; Simulation design ; Stochastic individual-based model ; Vertebrates: general zoology, morphology, phylogeny, systematics, cytogenetics, geographical distribution</subject><ispartof>Ecological modelling, 2006-03, Vol.193 (3), p.479-491</ispartof><rights>2005 Elsevier B.V.</rights><rights>2006 INIST-CNRS</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c410t-a6fa586801546355b006b5c9b006106cff4d027d0abf53fabc19fde7eea6c5113</citedby><cites>FETCH-LOGICAL-c410t-a6fa586801546355b006b5c9b006106cff4d027d0abf53fabc19fde7eea6c5113</cites><orcidid>0000-0002-2855-1571 ; 0000-0001-8225-495X ; 0000-0002-7145-6713</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.ecolmodel.2005.08.025$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>230,314,780,784,885,3548,27922,27923,45993</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=17542724$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.inrae.fr/hal-02659283$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Ginot, Vincent</creatorcontrib><creatorcontrib>Gaba, Sabrina</creatorcontrib><creatorcontrib>Beaudouin, Rémy</creatorcontrib><creatorcontrib>Aries, Franck</creatorcontrib><creatorcontrib>Monod, Hervé</creatorcontrib><title>Combined use of local and ANOVA-based global sensitivity analyses for the investigation of a stochastic dynamic model: Application to the case study of an individual-based model of a fish population</title><title>Ecological modelling</title><description>Global methods based on variance decomposition are increasingly being used for sensitivity analysis (SA). Of these, analysis of variance (ANOVA) is surprisingly rarely employed. Yet, it is a viable alternative to other model-free methods, as it gives comparable results and is readily available in most statistical packages. Furthermore, decomposing the input factors of ANOVA into orthogonal polynomial effects gives additional insights into the way a parameter impacts on model output (linear, quadratic and cubic). However, using global methods should not lead modellers to forego local methods, which provide additional information, as, for example, time course analysis of local sensitivity coefficients. We illustrate the use of these techniques, particularly ANOVA, on a stochastic individual-based model of a mosquitofish ( Gambusia holbrooki) population in experimental tanks. Local SA led to unexpected and counter-intuitive results, indicating that the model output (population size) was much more sensitive to the fecundity threshold (length at first parturition) than to the fecundity parameter (brood size). Time course analysis of local coefficients suggested that, as far as calibration is concerned, it would probably be impossible to determine more than two parameters on the sole records of the population size in time. Global SA (ANOVA) was targeted to assess which processes had an impact on the model outcome in our experimental conditions, by exploring the parameter space over the entire biological range of all parameters. It showed that parameters had mainly linear and additive effects (few interactions) on the output in a logarithmic scale, and that the main processes involved in population growth were individual growth and adult survival, followed by the breeding process. Juvenile survival had a lesser impact.</description><subject>Agnatha. Pisces</subject><subject>Animal, plant and microbial ecology</subject><subject>ANOVA</subject><subject>Biodiversity and Ecology</subject><subject>Biological and medical sciences</subject><subject>Computer experiments</subject><subject>Environmental Sciences</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gambusia holbrooki</subject><subject>General aspects. Techniques</subject><subject>Methods and techniques (sampling, tagging, trapping, modelling...)</subject><subject>Sensitivity analysis</subject><subject>Simulation design</subject><subject>Stochastic individual-based model</subject><subject>Vertebrates: general zoology, morphology, phylogeny, systematics, cytogenetics, geographical distribution</subject><issn>0304-3800</issn><issn>1872-7026</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><recordid>eNqFkc2O1DAQhCMEEsPCM-ALSBwS2k6cZLhFI2CRRuwFuFod_-x45IlDnIyUF-S5cJLRcuTUUvurKqsrSd5SyCjQ8uM509K7i1faZQyAZ1BnwPizZEfriqUVsPJ5soMcijSvAV4mr0I4AwBlNdslfw7-0tpOKzIFTbwhzkt0BDtFmu8Pv5q0xRAfH51v4zroLtjRXu04RwTdHHQgxg9kPGliu6sOo33E0fpusUISRi9PGJeSqLnDS5zrRz-Rpu-dlRs6-lUvY1JUTGpexV00VDFKTehuv1i1m7Ox4UR6309u9XidvDDogn5zm3fJzy-ffxzu0-PD12-H5pjKgsKYYmmQ12UNlBdlznkLULZc7pdJoZTGFApYpQBbw3ODraR7o3SlNZaSU5rfJR823xM60Q_2gsMsPFpx3xzFsovX5ntW59eFfb-x_eB_T_E04mKD1M5hp_0UBN0XjBY8j2C1gXLwIQzaPDlTEEvH4iyeOhZLxwLqmMSj8t0tAkOszQzYSRv-yStesIoVkWs2TsfbXK0eRJBWd1IrO2g5CuXtf7P-AtSSxJQ</recordid><startdate>20060315</startdate><enddate>20060315</enddate><creator>Ginot, Vincent</creator><creator>Gaba, Sabrina</creator><creator>Beaudouin, Rémy</creator><creator>Aries, Franck</creator><creator>Monod, Hervé</creator><general>Elsevier B.V</general><general>Elsevier</general><scope>IQODW</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7ST</scope><scope>7U6</scope><scope>C1K</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><scope>1XC</scope><orcidid>https://orcid.org/0000-0002-2855-1571</orcidid><orcidid>https://orcid.org/0000-0001-8225-495X</orcidid><orcidid>https://orcid.org/0000-0002-7145-6713</orcidid></search><sort><creationdate>20060315</creationdate><title>Combined use of local and ANOVA-based global sensitivity analyses for the investigation of a stochastic dynamic model: Application to the case study of an individual-based model of a fish population</title><author>Ginot, Vincent ; Gaba, Sabrina ; Beaudouin, Rémy ; Aries, Franck ; Monod, Hervé</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c410t-a6fa586801546355b006b5c9b006106cff4d027d0abf53fabc19fde7eea6c5113</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>Agnatha. Pisces</topic><topic>Animal, plant and microbial ecology</topic><topic>ANOVA</topic><topic>Biodiversity and Ecology</topic><topic>Biological and medical sciences</topic><topic>Computer experiments</topic><topic>Environmental Sciences</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gambusia holbrooki</topic><topic>General aspects. Techniques</topic><topic>Methods and techniques (sampling, tagging, trapping, modelling...)</topic><topic>Sensitivity analysis</topic><topic>Simulation design</topic><topic>Stochastic individual-based model</topic><topic>Vertebrates: general zoology, morphology, phylogeny, systematics, cytogenetics, geographical distribution</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ginot, Vincent</creatorcontrib><creatorcontrib>Gaba, Sabrina</creatorcontrib><creatorcontrib>Beaudouin, Rémy</creatorcontrib><creatorcontrib>Aries, Franck</creatorcontrib><creatorcontrib>Monod, Hervé</creatorcontrib><collection>Pascal-Francis</collection><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Environment Abstracts</collection><collection>Sustainability Science Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science &amp; Fisheries Abstracts (ASFA) 1: Biological Sciences &amp; Living Resources</collection><collection>Aquatic Science &amp; Fisheries Abstracts (ASFA) Professional</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>Ecological modelling</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ginot, Vincent</au><au>Gaba, Sabrina</au><au>Beaudouin, Rémy</au><au>Aries, Franck</au><au>Monod, Hervé</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Combined use of local and ANOVA-based global sensitivity analyses for the investigation of a stochastic dynamic model: Application to the case study of an individual-based model of a fish population</atitle><jtitle>Ecological modelling</jtitle><date>2006-03-15</date><risdate>2006</risdate><volume>193</volume><issue>3</issue><spage>479</spage><epage>491</epage><pages>479-491</pages><issn>0304-3800</issn><eissn>1872-7026</eissn><coden>ECMODT</coden><abstract>Global methods based on variance decomposition are increasingly being used for sensitivity analysis (SA). Of these, analysis of variance (ANOVA) is surprisingly rarely employed. Yet, it is a viable alternative to other model-free methods, as it gives comparable results and is readily available in most statistical packages. Furthermore, decomposing the input factors of ANOVA into orthogonal polynomial effects gives additional insights into the way a parameter impacts on model output (linear, quadratic and cubic). However, using global methods should not lead modellers to forego local methods, which provide additional information, as, for example, time course analysis of local sensitivity coefficients. We illustrate the use of these techniques, particularly ANOVA, on a stochastic individual-based model of a mosquitofish ( Gambusia holbrooki) population in experimental tanks. Local SA led to unexpected and counter-intuitive results, indicating that the model output (population size) was much more sensitive to the fecundity threshold (length at first parturition) than to the fecundity parameter (brood size). Time course analysis of local coefficients suggested that, as far as calibration is concerned, it would probably be impossible to determine more than two parameters on the sole records of the population size in time. Global SA (ANOVA) was targeted to assess which processes had an impact on the model outcome in our experimental conditions, by exploring the parameter space over the entire biological range of all parameters. It showed that parameters had mainly linear and additive effects (few interactions) on the output in a logarithmic scale, and that the main processes involved in population growth were individual growth and adult survival, followed by the breeding process. Juvenile survival had a lesser impact.</abstract><cop>Amsterdam</cop><pub>Elsevier B.V</pub><doi>10.1016/j.ecolmodel.2005.08.025</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0002-2855-1571</orcidid><orcidid>https://orcid.org/0000-0001-8225-495X</orcidid><orcidid>https://orcid.org/0000-0002-7145-6713</orcidid></addata></record>
fulltext fulltext
identifier ISSN: 0304-3800
ispartof Ecological modelling, 2006-03, Vol.193 (3), p.479-491
issn 0304-3800
1872-7026
language eng
recordid cdi_hal_primary_oai_HAL_hal_02659283v1
source Elsevier ScienceDirect Journals Complete
subjects Agnatha. Pisces
Animal, plant and microbial ecology
ANOVA
Biodiversity and Ecology
Biological and medical sciences
Computer experiments
Environmental Sciences
Fundamental and applied biological sciences. Psychology
Gambusia holbrooki
General aspects. Techniques
Methods and techniques (sampling, tagging, trapping, modelling...)
Sensitivity analysis
Simulation design
Stochastic individual-based model
Vertebrates: general zoology, morphology, phylogeny, systematics, cytogenetics, geographical distribution
title Combined use of local and ANOVA-based global sensitivity analyses for the investigation of a stochastic dynamic model: Application to the case study of an individual-based model of a fish population
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-14T16%3A26%3A53IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_hal_p&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Combined%20use%20of%20local%20and%20ANOVA-based%20global%20sensitivity%20analyses%20for%20the%20investigation%20of%20a%20stochastic%20dynamic%20model:%20Application%20to%20the%20case%20study%20of%20an%20individual-based%20model%20of%20a%20fish%20population&rft.jtitle=Ecological%20modelling&rft.au=Ginot,%20Vincent&rft.date=2006-03-15&rft.volume=193&rft.issue=3&rft.spage=479&rft.epage=491&rft.pages=479-491&rft.issn=0304-3800&rft.eissn=1872-7026&rft.coden=ECMODT&rft_id=info:doi/10.1016/j.ecolmodel.2005.08.025&rft_dat=%3Cproquest_hal_p%3E19421453%3C/proquest_hal_p%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=19421453&rft_id=info:pmid/&rft_els_id=S0304380005004084&rfr_iscdi=true