first-generation microsatellite-based integrated genetic and cytogenetic map for the European rabbit (Oryctolagus cuniculus) and localization of angora and albino
Although the European rabbit (Oryctolagus cuniculus) is used both in agronomics and in research, genomic resources for this species are still limited and no microsatellite-based genetic map has been reported. Our aim was to construct a rabbit genetic map with cytogenetically mapped microsatellites s...
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| Veröffentlicht in: | Animal genetics 2006-08, Vol.37 (4), p.335-341 |
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| creator | Chantry-Darmon, C Urien, C de Rochambeau, H Allain, D Pena, B Hayes, H Grohs, C Cribiu, E.P Deretz-Picoulet, S Larzul, C Save, J.C Neau, A Chardon, P Rogel-Gaillard, C |
| description | Although the European rabbit (Oryctolagus cuniculus) is used both in agronomics and in research, genomic resources for this species are still limited and no microsatellite-based genetic map has been reported. Our aim was to construct a rabbit genetic map with cytogenetically mapped microsatellites so as to build an integrated genetic and cytogenetic map. A reference population of 187 rabbits comprising eight three-generation families with 10-25 offspring per family was produced. One hundred and ninety-four of 305 previously identified microsatellites were included in this study. Of these, 158 were polymorphic with two to seven alleles. The map reported here comprises 111 markers, including 104 INRA microsatellites, five microsatellites from another source and two phenotypic markers (angora and albino). Ninety markers were integrated into 20 linkage groups. The remaining 21 microsatellites mapped to separate linkage groups, 19 with a precise cytogenetic position and two with only a chromosomal assignment. The genetic map spans 2766.6 cM and covers 20 rabbit chromosomes, excluding chromosomes 20, 21 and X. The density of this map is limited, but we used it to verify the location of angora and albino on chromosomes 15q and 1q, respectively, in agreement with previously published data. This first generation genetic/cytogenetic map will help gene identification and quantitative trait loci mapping projects in rabbit. |
| doi_str_mv | 10.1111/j.1365-2052.2006.01462.x |
| format | Article |
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Our aim was to construct a rabbit genetic map with cytogenetically mapped microsatellites so as to build an integrated genetic and cytogenetic map. A reference population of 187 rabbits comprising eight three-generation families with 10-25 offspring per family was produced. One hundred and ninety-four of 305 previously identified microsatellites were included in this study. Of these, 158 were polymorphic with two to seven alleles. The map reported here comprises 111 markers, including 104 INRA microsatellites, five microsatellites from another source and two phenotypic markers (angora and albino). Ninety markers were integrated into 20 linkage groups. The remaining 21 microsatellites mapped to separate linkage groups, 19 with a precise cytogenetic position and two with only a chromosomal assignment. The genetic map spans 2766.6 cM and covers 20 rabbit chromosomes, excluding chromosomes 20, 21 and X. The density of this map is limited, but we used it to verify the location of angora and albino on chromosomes 15q and 1q, respectively, in agreement with previously published data. This first generation genetic/cytogenetic map will help gene identification and quantitative trait loci mapping projects in rabbit.</description><identifier>ISSN: 0268-9146</identifier><identifier>EISSN: 1365-2052</identifier><identifier>DOI: 10.1111/j.1365-2052.2006.01462.x</identifier><identifier>PMID: 16879342</identifier><language>eng</language><publisher>Oxford, UK: Oxford, UK : Blackwell Publishing Ltd</publisher><subject>albino ; Alleles ; angora ; Animals ; Chromosome Mapping ; chromosomes ; cytogenetic analysis ; cytogenetic map ; Genes ; Genetic Linkage ; genetic map ; Genetic Markers ; genetic polymorphism ; Genetics ; genome ; Life Sciences ; linkage ; linkage groups ; Microsatellite Repeats ; microsatellites ; molecular sequence data ; Oryctolagus cuniculus ; Phenotype ; physical chromosome mapping ; Polymorphism, Genetic ; rabbit ; rabbits ; Rabbits - genetics</subject><ispartof>Animal genetics, 2006-08, Vol.37 (4), p.335-341</ispartof><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5442-3efafaad78ebf42772dde060d9b96eaa2d7aec16bc0ed74fea36a2817516ea383</citedby><cites>FETCH-LOGICAL-c5442-3efafaad78ebf42772dde060d9b96eaa2d7aec16bc0ed74fea36a2817516ea383</cites><orcidid>0000-0002-5442-2626 ; 0000-0002-2174-1962 ; 0000-0002-0533-331X ; 0000-0002-3563-8966</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fj.1365-2052.2006.01462.x$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fj.1365-2052.2006.01462.x$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>230,314,776,780,881,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16879342$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.inrae.fr/hal-02659000$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Chantry-Darmon, C</creatorcontrib><creatorcontrib>Urien, C</creatorcontrib><creatorcontrib>de Rochambeau, H</creatorcontrib><creatorcontrib>Allain, D</creatorcontrib><creatorcontrib>Pena, B</creatorcontrib><creatorcontrib>Hayes, H</creatorcontrib><creatorcontrib>Grohs, C</creatorcontrib><creatorcontrib>Cribiu, E.P</creatorcontrib><creatorcontrib>Deretz-Picoulet, S</creatorcontrib><creatorcontrib>Larzul, C</creatorcontrib><creatorcontrib>Save, J.C</creatorcontrib><creatorcontrib>Neau, A</creatorcontrib><creatorcontrib>Chardon, P</creatorcontrib><creatorcontrib>Rogel-Gaillard, C</creatorcontrib><title>first-generation microsatellite-based integrated genetic and cytogenetic map for the European rabbit (Oryctolagus cuniculus) and localization of angora and albino</title><title>Animal genetics</title><addtitle>Anim Genet</addtitle><description>Although the European rabbit (Oryctolagus cuniculus) is used both in agronomics and in research, genomic resources for this species are still limited and no microsatellite-based genetic map has been reported. Our aim was to construct a rabbit genetic map with cytogenetically mapped microsatellites so as to build an integrated genetic and cytogenetic map. A reference population of 187 rabbits comprising eight three-generation families with 10-25 offspring per family was produced. One hundred and ninety-four of 305 previously identified microsatellites were included in this study. Of these, 158 were polymorphic with two to seven alleles. The map reported here comprises 111 markers, including 104 INRA microsatellites, five microsatellites from another source and two phenotypic markers (angora and albino). Ninety markers were integrated into 20 linkage groups. The remaining 21 microsatellites mapped to separate linkage groups, 19 with a precise cytogenetic position and two with only a chromosomal assignment. The genetic map spans 2766.6 cM and covers 20 rabbit chromosomes, excluding chromosomes 20, 21 and X. The density of this map is limited, but we used it to verify the location of angora and albino on chromosomes 15q and 1q, respectively, in agreement with previously published data. This first generation genetic/cytogenetic map will help gene identification and quantitative trait loci mapping projects in rabbit.</description><subject>albino</subject><subject>Alleles</subject><subject>angora</subject><subject>Animals</subject><subject>Chromosome Mapping</subject><subject>chromosomes</subject><subject>cytogenetic analysis</subject><subject>cytogenetic map</subject><subject>Genes</subject><subject>Genetic Linkage</subject><subject>genetic map</subject><subject>Genetic Markers</subject><subject>genetic polymorphism</subject><subject>Genetics</subject><subject>genome</subject><subject>Life Sciences</subject><subject>linkage</subject><subject>linkage groups</subject><subject>Microsatellite Repeats</subject><subject>microsatellites</subject><subject>molecular sequence data</subject><subject>Oryctolagus cuniculus</subject><subject>Phenotype</subject><subject>physical chromosome mapping</subject><subject>Polymorphism, Genetic</subject><subject>rabbit</subject><subject>rabbits</subject><subject>Rabbits - genetics</subject><issn>0268-9146</issn><issn>1365-2052</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkc2O0zAUhSMEYsrAK4BXiFmk2E7iJAsW1ajTAVUzI8GIpXXj3HRc0rhjO9DyODwpTlPKErzxz_3OvdY5UUQYnbKw3q-nLBFZzGnGp5xSMaUsFXy6exJNToWn0YRyUcRlKJ1FL5xbU0oLlrPn0RkTRV4mKZ9EvxptnY9X2KEFr01HNlpZ48Bj22qPcQUOa6I7j6sAhOOAeq0IdDVRe2_-3DewJY2xxD8gmffWbBE6YqGqtCfvbu1eedPCqndE9Z1Wfdu7i0OP1iho9c9xuGnC28pYOJSgrXRnXkbPGmgdvjru59H91fzL5XW8vF18vJwtY5WlKY8TbKABqPMCqyblec7rGqmgdVmVAgF4nQMqJipFsc7TBiERwIMhGQvlpEjOo4ux7wO0cmv1BuxeGtDyeraUw1uwMyuDid9ZYN-O7Naaxx6dlxvtVLAMOjS9k6IQpWA8-SfIyoSHlGgAixEc3HcWm9MXGJVD6HIth2zlkK0cQpeH0OUuSF8fZ_TVBuu_wmPKAfgwAj90i_v_bixni_lwCvp41GvncXfSg_0mRZ7kmfx6s5B3d1eF-CRKeRP4NyPfgJGwstrJ-8-csoQyWhRl8OU3MTvW3Q</recordid><startdate>200608</startdate><enddate>200608</enddate><creator>Chantry-Darmon, C</creator><creator>Urien, C</creator><creator>de Rochambeau, H</creator><creator>Allain, D</creator><creator>Pena, B</creator><creator>Hayes, H</creator><creator>Grohs, C</creator><creator>Cribiu, E.P</creator><creator>Deretz-Picoulet, S</creator><creator>Larzul, C</creator><creator>Save, J.C</creator><creator>Neau, A</creator><creator>Chardon, P</creator><creator>Rogel-Gaillard, C</creator><general>Oxford, UK : Blackwell Publishing Ltd</general><general>Blackwell Publishing Ltd</general><general>Wiley-Blackwell</general><scope>FBQ</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>1XC</scope><scope>VOOES</scope><orcidid>https://orcid.org/0000-0002-5442-2626</orcidid><orcidid>https://orcid.org/0000-0002-2174-1962</orcidid><orcidid>https://orcid.org/0000-0002-0533-331X</orcidid><orcidid>https://orcid.org/0000-0002-3563-8966</orcidid></search><sort><creationdate>200608</creationdate><title>first-generation microsatellite-based integrated genetic and cytogenetic map for the European rabbit (Oryctolagus cuniculus) and localization of angora and albino</title><author>Chantry-Darmon, C ; Urien, C ; de Rochambeau, H ; Allain, D ; Pena, B ; Hayes, H ; Grohs, C ; Cribiu, E.P ; Deretz-Picoulet, S ; Larzul, C ; Save, J.C ; Neau, A ; Chardon, P ; Rogel-Gaillard, C</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5442-3efafaad78ebf42772dde060d9b96eaa2d7aec16bc0ed74fea36a2817516ea383</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>albino</topic><topic>Alleles</topic><topic>angora</topic><topic>Animals</topic><topic>Chromosome Mapping</topic><topic>chromosomes</topic><topic>cytogenetic analysis</topic><topic>cytogenetic map</topic><topic>Genes</topic><topic>Genetic Linkage</topic><topic>genetic map</topic><topic>Genetic Markers</topic><topic>genetic polymorphism</topic><topic>Genetics</topic><topic>genome</topic><topic>Life Sciences</topic><topic>linkage</topic><topic>linkage groups</topic><topic>Microsatellite Repeats</topic><topic>microsatellites</topic><topic>molecular sequence data</topic><topic>Oryctolagus cuniculus</topic><topic>Phenotype</topic><topic>physical chromosome mapping</topic><topic>Polymorphism, Genetic</topic><topic>rabbit</topic><topic>rabbits</topic><topic>Rabbits - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chantry-Darmon, C</creatorcontrib><creatorcontrib>Urien, C</creatorcontrib><creatorcontrib>de Rochambeau, H</creatorcontrib><creatorcontrib>Allain, D</creatorcontrib><creatorcontrib>Pena, B</creatorcontrib><creatorcontrib>Hayes, H</creatorcontrib><creatorcontrib>Grohs, C</creatorcontrib><creatorcontrib>Cribiu, E.P</creatorcontrib><creatorcontrib>Deretz-Picoulet, S</creatorcontrib><creatorcontrib>Larzul, C</creatorcontrib><creatorcontrib>Save, J.C</creatorcontrib><creatorcontrib>Neau, A</creatorcontrib><creatorcontrib>Chardon, P</creatorcontrib><creatorcontrib>Rogel-Gaillard, C</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><collection>Hyper Article en Ligne (HAL) (Open Access)</collection><jtitle>Animal genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chantry-Darmon, C</au><au>Urien, C</au><au>de Rochambeau, H</au><au>Allain, D</au><au>Pena, B</au><au>Hayes, H</au><au>Grohs, C</au><au>Cribiu, E.P</au><au>Deretz-Picoulet, S</au><au>Larzul, C</au><au>Save, J.C</au><au>Neau, A</au><au>Chardon, P</au><au>Rogel-Gaillard, C</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>first-generation microsatellite-based integrated genetic and cytogenetic map for the European rabbit (Oryctolagus cuniculus) and localization of angora and albino</atitle><jtitle>Animal genetics</jtitle><addtitle>Anim Genet</addtitle><date>2006-08</date><risdate>2006</risdate><volume>37</volume><issue>4</issue><spage>335</spage><epage>341</epage><pages>335-341</pages><issn>0268-9146</issn><eissn>1365-2052</eissn><abstract>Although the European rabbit (Oryctolagus cuniculus) is used both in agronomics and in research, genomic resources for this species are still limited and no microsatellite-based genetic map has been reported. Our aim was to construct a rabbit genetic map with cytogenetically mapped microsatellites so as to build an integrated genetic and cytogenetic map. A reference population of 187 rabbits comprising eight three-generation families with 10-25 offspring per family was produced. One hundred and ninety-four of 305 previously identified microsatellites were included in this study. Of these, 158 were polymorphic with two to seven alleles. The map reported here comprises 111 markers, including 104 INRA microsatellites, five microsatellites from another source and two phenotypic markers (angora and albino). Ninety markers were integrated into 20 linkage groups. The remaining 21 microsatellites mapped to separate linkage groups, 19 with a precise cytogenetic position and two with only a chromosomal assignment. The genetic map spans 2766.6 cM and covers 20 rabbit chromosomes, excluding chromosomes 20, 21 and X. The density of this map is limited, but we used it to verify the location of angora and albino on chromosomes 15q and 1q, respectively, in agreement with previously published data. This first generation genetic/cytogenetic map will help gene identification and quantitative trait loci mapping projects in rabbit.</abstract><cop>Oxford, UK</cop><pub>Oxford, UK : Blackwell Publishing Ltd</pub><pmid>16879342</pmid><doi>10.1111/j.1365-2052.2006.01462.x</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0002-5442-2626</orcidid><orcidid>https://orcid.org/0000-0002-2174-1962</orcidid><orcidid>https://orcid.org/0000-0002-0533-331X</orcidid><orcidid>https://orcid.org/0000-0002-3563-8966</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
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| ispartof | Animal genetics, 2006-08, Vol.37 (4), p.335-341 |
| issn | 0268-9146 1365-2052 |
| language | eng |
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| source | MEDLINE; Wiley Online Library Journals Frontfile Complete |
| subjects | albino Alleles angora Animals Chromosome Mapping chromosomes cytogenetic analysis cytogenetic map Genes Genetic Linkage genetic map Genetic Markers genetic polymorphism Genetics genome Life Sciences linkage linkage groups Microsatellite Repeats microsatellites molecular sequence data Oryctolagus cuniculus Phenotype physical chromosome mapping Polymorphism, Genetic rabbit rabbits Rabbits - genetics |
| title | first-generation microsatellite-based integrated genetic and cytogenetic map for the European rabbit (Oryctolagus cuniculus) and localization of angora and albino |
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