Genetic mapping of EST-derived simple sequence repeats (EST-SSRs) to identify QTL for leaf morphological characters in a Quercus robur full-sib family
The availability of genomic resources such as expressed sequence tag-derived simple sequence repeat (EST-SSR) markers in adaptive genes with high transferability across related species allows the construction of genetic maps and the comparison of genome structure and quantitative trait loci (QTL) po...
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| Veröffentlicht in: | Tree genetics & genomes 2013-10, Vol.9 (5), p.1361-1367 |
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| creator | Gailing, Oliver Bodénès, Catherine Finkeldey, Reiner Kremer, Antoine Plomion, Christophe |
| description | The availability of genomic resources such as expressed sequence tag-derived simple sequence repeat (EST-SSR) markers in adaptive genes with high transferability across related species allows the construction of genetic maps and the comparison of genome structure and quantitative trait loci (QTL) positions. In the present study, genetic linkage maps were constructed for both parents of a Quercus robur × Q. robur ssp. slavonica full-sib pedigree. A total of 182 markers (61 AFLPs, 23 nuclear SSRs, 98 EST-SSRs) and 172 markers (49 AFLPs, 21 nSSRs, 101 EST-SSRs, 1 isozyme) were mapped on the female and male linkage maps, respectively. The total map length and average marker spacing were 1,038 and 5.7 cM for the female map and 998.5 and 5.8 cM for the male map. A total of 68 nuclear SSRs and EST-SSRs segregating in both parents allowed to define homologous linkage groups (LG) between both parental maps. QTL for leaf morphological traits were mapped on all 12 LG at a chromosome-wide level and on 6 LG at a genome-wide level. The phenotypic effects explained by each single QTL ranged from 4.0 % for leaf area to 15.8 % for the number of intercalary veins. QTL clusters for leaf characters that discriminate between Q. robur and Quercus petraea were mapped reproducibly on three LG, and some putative candidate genes among potentially many others were identified on LG3 and LG5. Genetic linkage maps based on EST-SSRs can be valuable tools for the identification of genes involved in adaptive trait variation and for comparative mapping. |
| doi_str_mv | 10.1007/s11295-013-0633-9 |
| format | Article |
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In the present study, genetic linkage maps were constructed for both parents of a Quercus robur × Q. robur ssp. slavonica full-sib pedigree. A total of 182 markers (61 AFLPs, 23 nuclear SSRs, 98 EST-SSRs) and 172 markers (49 AFLPs, 21 nSSRs, 101 EST-SSRs, 1 isozyme) were mapped on the female and male linkage maps, respectively. The total map length and average marker spacing were 1,038 and 5.7 cM for the female map and 998.5 and 5.8 cM for the male map. A total of 68 nuclear SSRs and EST-SSRs segregating in both parents allowed to define homologous linkage groups (LG) between both parental maps. QTL for leaf morphological traits were mapped on all 12 LG at a chromosome-wide level and on 6 LG at a genome-wide level. The phenotypic effects explained by each single QTL ranged from 4.0 % for leaf area to 15.8 % for the number of intercalary veins. QTL clusters for leaf characters that discriminate between Q. robur and Quercus petraea were mapped reproducibly on three LG, and some putative candidate genes among potentially many others were identified on LG3 and LG5. Genetic linkage maps based on EST-SSRs can be valuable tools for the identification of genes involved in adaptive trait variation and for comparative mapping.</description><identifier>ISSN: 1614-2942</identifier><identifier>EISSN: 1614-2950</identifier><identifier>DOI: 10.1007/s11295-013-0633-9</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer-Verlag</publisher><subject>amplified fragment length polymorphism ; Biomedical and Life Sciences ; Biotechnology ; chromosome mapping ; Forestry ; Gene mapping ; genes ; Genetics ; Genomes ; isozymes ; leaf area ; leaves ; Life Sciences ; linkage groups ; Localization ; microsatellite repeats ; Morphology ; parents ; pedigree ; Plant Breeding/Biotechnology ; Plant Genetics and Genomics ; Polymorphism ; quantitative trait loci ; Quercus petraea ; Quercus robur ; Short Communication ; spatial distribution ; Tree Biology</subject><ispartof>Tree genetics & genomes, 2013-10, Vol.9 (5), p.1361-1367</ispartof><rights>Springer-Verlag Berlin Heidelberg 2013</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c398t-7ca250feb2b80d23131aa161fad1731e52c8b203e2c2e0513e1b898f00dbc2fe3</citedby><cites>FETCH-LOGICAL-c398t-7ca250feb2b80d23131aa161fad1731e52c8b203e2c2e0513e1b898f00dbc2fe3</cites><orcidid>0000-0002-3372-3235 ; 0000-0002-3176-2767</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11295-013-0633-9$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11295-013-0633-9$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>230,314,777,781,882,27905,27906,41469,42538,51300</link.rule.ids><backlink>$$Uhttps://hal.inrae.fr/hal-02646913$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Gailing, Oliver</creatorcontrib><creatorcontrib>Bodénès, Catherine</creatorcontrib><creatorcontrib>Finkeldey, Reiner</creatorcontrib><creatorcontrib>Kremer, Antoine</creatorcontrib><creatorcontrib>Plomion, Christophe</creatorcontrib><title>Genetic mapping of EST-derived simple sequence repeats (EST-SSRs) to identify QTL for leaf morphological characters in a Quercus robur full-sib family</title><title>Tree genetics & genomes</title><addtitle>Tree Genetics & Genomes</addtitle><description>The availability of genomic resources such as expressed sequence tag-derived simple sequence repeat (EST-SSR) markers in adaptive genes with high transferability across related species allows the construction of genetic maps and the comparison of genome structure and quantitative trait loci (QTL) positions. In the present study, genetic linkage maps were constructed for both parents of a Quercus robur × Q. robur ssp. slavonica full-sib pedigree. A total of 182 markers (61 AFLPs, 23 nuclear SSRs, 98 EST-SSRs) and 172 markers (49 AFLPs, 21 nSSRs, 101 EST-SSRs, 1 isozyme) were mapped on the female and male linkage maps, respectively. The total map length and average marker spacing were 1,038 and 5.7 cM for the female map and 998.5 and 5.8 cM for the male map. A total of 68 nuclear SSRs and EST-SSRs segregating in both parents allowed to define homologous linkage groups (LG) between both parental maps. QTL for leaf morphological traits were mapped on all 12 LG at a chromosome-wide level and on 6 LG at a genome-wide level. The phenotypic effects explained by each single QTL ranged from 4.0 % for leaf area to 15.8 % for the number of intercalary veins. QTL clusters for leaf characters that discriminate between Q. robur and Quercus petraea were mapped reproducibly on three LG, and some putative candidate genes among potentially many others were identified on LG3 and LG5. Genetic linkage maps based on EST-SSRs can be valuable tools for the identification of genes involved in adaptive trait variation and for comparative mapping.</description><subject>amplified fragment length polymorphism</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>chromosome mapping</subject><subject>Forestry</subject><subject>Gene mapping</subject><subject>genes</subject><subject>Genetics</subject><subject>Genomes</subject><subject>isozymes</subject><subject>leaf area</subject><subject>leaves</subject><subject>Life Sciences</subject><subject>linkage groups</subject><subject>Localization</subject><subject>microsatellite repeats</subject><subject>Morphology</subject><subject>parents</subject><subject>pedigree</subject><subject>Plant Breeding/Biotechnology</subject><subject>Plant Genetics and Genomics</subject><subject>Polymorphism</subject><subject>quantitative trait loci</subject><subject>Quercus petraea</subject><subject>Quercus robur</subject><subject>Short Communication</subject><subject>spatial distribution</subject><subject>Tree Biology</subject><issn>1614-2942</issn><issn>1614-2950</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kcFq3DAQhk1poWnaB-ipA700B6czktdeH0NIk8JCSXdzFrI82lWwLVeyA_sifd5qcQk5BQQSw_f_SPqy7DPhJSFW3yORqFc5ksyxlDKv32RnVFKRpym-fT4X4n32IcZHxKLCsjzL_t7ywJMz0OtxdMMevIWb7S5vObgnbiG6fuwYIv-ZeTAMgUfWU4RvJ2i7_R0vYPLgWh4mZ49wv9uA9QE61hZ6H8aD7_zeGd2BOeigzcQhghtAw_3MwcwRgm_mAHbuujy6BqzuXXf8mL2zuov86f9-nj38uNld3-WbX7c_r682uZH1esoro8UKLTeiWWMrJEnSOj3V6pYqSbwSZt0IlCyMYFyRZGrW9doito0RluV5drH0HnSnxuB6HY7Ka6furjbqNENRFmVN8okS-3Vhx-DTb8RJPfo5DOl6igopsarSShQtlAk-xsD2uZZQnVSpRZVKqtRJlapTRiyZmNhhz-FF8yuhL0vIaq_0PrioHrYCqcAkl6guXyVEaqvkP6V9qJw</recordid><startdate>20131001</startdate><enddate>20131001</enddate><creator>Gailing, Oliver</creator><creator>Bodénès, Catherine</creator><creator>Finkeldey, Reiner</creator><creator>Kremer, Antoine</creator><creator>Plomion, Christophe</creator><general>Springer-Verlag</general><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><general>Springer Verlag</general><scope>FBQ</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X2</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>1XC</scope><orcidid>https://orcid.org/0000-0002-3372-3235</orcidid><orcidid>https://orcid.org/0000-0002-3176-2767</orcidid></search><sort><creationdate>20131001</creationdate><title>Genetic mapping of EST-derived simple sequence repeats (EST-SSRs) to identify QTL for leaf morphological characters in a Quercus robur full-sib family</title><author>Gailing, Oliver ; Bodénès, Catherine ; Finkeldey, Reiner ; Kremer, Antoine ; Plomion, Christophe</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c398t-7ca250feb2b80d23131aa161fad1731e52c8b203e2c2e0513e1b898f00dbc2fe3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>amplified fragment length polymorphism</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>chromosome mapping</topic><topic>Forestry</topic><topic>Gene mapping</topic><topic>genes</topic><topic>Genetics</topic><topic>Genomes</topic><topic>isozymes</topic><topic>leaf area</topic><topic>leaves</topic><topic>Life Sciences</topic><topic>linkage groups</topic><topic>Localization</topic><topic>microsatellite repeats</topic><topic>Morphology</topic><topic>parents</topic><topic>pedigree</topic><topic>Plant Breeding/Biotechnology</topic><topic>Plant Genetics and Genomics</topic><topic>Polymorphism</topic><topic>quantitative trait loci</topic><topic>Quercus petraea</topic><topic>Quercus robur</topic><topic>Short Communication</topic><topic>spatial distribution</topic><topic>Tree Biology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gailing, Oliver</creatorcontrib><creatorcontrib>Bodénès, Catherine</creatorcontrib><creatorcontrib>Finkeldey, Reiner</creatorcontrib><creatorcontrib>Kremer, Antoine</creatorcontrib><creatorcontrib>Plomion, Christophe</creatorcontrib><collection>AGRIS</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>Tree genetics & genomes</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gailing, Oliver</au><au>Bodénès, Catherine</au><au>Finkeldey, Reiner</au><au>Kremer, Antoine</au><au>Plomion, Christophe</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic mapping of EST-derived simple sequence repeats (EST-SSRs) to identify QTL for leaf morphological characters in a Quercus robur full-sib family</atitle><jtitle>Tree genetics & genomes</jtitle><stitle>Tree Genetics & Genomes</stitle><date>2013-10-01</date><risdate>2013</risdate><volume>9</volume><issue>5</issue><spage>1361</spage><epage>1367</epage><pages>1361-1367</pages><issn>1614-2942</issn><eissn>1614-2950</eissn><abstract>The availability of genomic resources such as expressed sequence tag-derived simple sequence repeat (EST-SSR) markers in adaptive genes with high transferability across related species allows the construction of genetic maps and the comparison of genome structure and quantitative trait loci (QTL) positions. In the present study, genetic linkage maps were constructed for both parents of a Quercus robur × Q. robur ssp. slavonica full-sib pedigree. A total of 182 markers (61 AFLPs, 23 nuclear SSRs, 98 EST-SSRs) and 172 markers (49 AFLPs, 21 nSSRs, 101 EST-SSRs, 1 isozyme) were mapped on the female and male linkage maps, respectively. The total map length and average marker spacing were 1,038 and 5.7 cM for the female map and 998.5 and 5.8 cM for the male map. A total of 68 nuclear SSRs and EST-SSRs segregating in both parents allowed to define homologous linkage groups (LG) between both parental maps. QTL for leaf morphological traits were mapped on all 12 LG at a chromosome-wide level and on 6 LG at a genome-wide level. The phenotypic effects explained by each single QTL ranged from 4.0 % for leaf area to 15.8 % for the number of intercalary veins. QTL clusters for leaf characters that discriminate between Q. robur and Quercus petraea were mapped reproducibly on three LG, and some putative candidate genes among potentially many others were identified on LG3 and LG5. Genetic linkage maps based on EST-SSRs can be valuable tools for the identification of genes involved in adaptive trait variation and for comparative mapping.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer-Verlag</pub><doi>10.1007/s11295-013-0633-9</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0002-3372-3235</orcidid><orcidid>https://orcid.org/0000-0002-3176-2767</orcidid></addata></record> |
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| subjects | amplified fragment length polymorphism Biomedical and Life Sciences Biotechnology chromosome mapping Forestry Gene mapping genes Genetics Genomes isozymes leaf area leaves Life Sciences linkage groups Localization microsatellite repeats Morphology parents pedigree Plant Breeding/Biotechnology Plant Genetics and Genomics Polymorphism quantitative trait loci Quercus petraea Quercus robur Short Communication spatial distribution Tree Biology |
| title | Genetic mapping of EST-derived simple sequence repeats (EST-SSRs) to identify QTL for leaf morphological characters in a Quercus robur full-sib family |
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