Chitinophaga vietnamensis sp. nov. , a multi-drug resistant bacterium infecting humans
We describe a new multidrug resistant species that was isolated from patients with type 2 diabetes in Vietnam. Strain BD 01 was cultivated in 2017 from a blood sample of a patient suffering from bacteremia. Strain VP 7442 was isolated in 2018 from a pleural fluid sample of a patient who had presente...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2020-03, Vol.70 (3), p.1758-1768 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Tran, Thi Le Quyen Anani, Hussein Trinh, Ho Tinh Pham, Thi Phuong Thao Dang, Van Khoa Ho, Viet My Bui, Nguyen Hai Linh Nguyen, Nhu Hung Raoult, Didier Trinh, Thanh Trung Fournier, Pierre Edouard |
| description | We describe a new multidrug resistant
species that was isolated from patients with type 2 diabetes in Vietnam. Strain BD 01
was cultivated in 2017 from a blood sample of a patient suffering from bacteremia. Strain VP 7442 was isolated in 2018 from a pleural fluid sample of a patient who had presented with lung abscess and pleural effusion. Both strains are aerobic, Gram-negative, non-motile and non-spore-forming. The 16S rRNA gene sequences of both strains are 100 % similar and share a highest 16S sequence identity with
MRP-15
of 97.42 %. Their predominant fatty acid is iso-C
(73.8 % for strain BD 01
and 79.8 % for strain VP 7442). The draft genome sizes of strains BD 01
and VP 7442 are 6 308 408 and 6 308 579 bp, respectively. They are resistant to beta-lactams, aminoglycosides, fluoroquinolones, metronidazole, fosfomycin, vancomycin and macrolides, and exhibit 20 and 18 antimicrobial resistance-related genes, respectively. Using the multiphasic taxonogenomic approach, we propose that strains BD 01
(=CSUR P9622=VTCC 70981) and VP 7442 (=CSUR P9623=VTCC 70982) represent a new species, for which we propose the name
sp. nov. Strain BD 01
was chosen as type strain of
sp. nov. |
| doi_str_mv | 10.1099/ijsem.0.003968 |
| format | Article |
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species that was isolated from patients with type 2 diabetes in Vietnam. Strain BD 01
was cultivated in 2017 from a blood sample of a patient suffering from bacteremia. Strain VP 7442 was isolated in 2018 from a pleural fluid sample of a patient who had presented with lung abscess and pleural effusion. Both strains are aerobic, Gram-negative, non-motile and non-spore-forming. The 16S rRNA gene sequences of both strains are 100 % similar and share a highest 16S sequence identity with
MRP-15
of 97.42 %. Their predominant fatty acid is iso-C
(73.8 % for strain BD 01
and 79.8 % for strain VP 7442). The draft genome sizes of strains BD 01
and VP 7442 are 6 308 408 and 6 308 579 bp, respectively. They are resistant to beta-lactams, aminoglycosides, fluoroquinolones, metronidazole, fosfomycin, vancomycin and macrolides, and exhibit 20 and 18 antimicrobial resistance-related genes, respectively. Using the multiphasic taxonogenomic approach, we propose that strains BD 01
(=CSUR P9622=VTCC 70981) and VP 7442 (=CSUR P9623=VTCC 70982) represent a new species, for which we propose the name
sp. nov. Strain BD 01
was chosen as type strain of
sp. nov.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.003968</identifier><identifier>PMID: 32228771</identifier><language>eng</language><publisher>England: Microbiology Society</publisher><subject>Bacteremia ; Bacterial Typing Techniques ; Bacteriology ; Bacteroidetes - classification ; Bacteroidetes - isolation & purification ; Base Composition ; Cardiology and cardiovascular system ; Diabetes Mellitus, Type 2 ; DNA, Bacterial - genetics ; Drug Resistance, Multiple, Bacterial ; Emerging diseases ; Fatty Acids - chemistry ; Human health and pathology ; Humans ; Infectious diseases ; Life Sciences ; Lung Abscess - microbiology ; Microbiology and Parasitology ; Parasitology ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Vietnam ; Virology</subject><ispartof>International journal of systematic and evolutionary microbiology, 2020-03, Vol.70 (3), p.1758-1768</ispartof><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2848-33b6292da0c35456e37ad8a905cb6c4429686bdad0aea29434534341d18f2e603</citedby><cites>FETCH-LOGICAL-c2848-33b6292da0c35456e37ad8a905cb6c4429686bdad0aea29434534341d18f2e603</cites><orcidid>0000-0001-5522-4181 ; 0000-0001-8463-8885 ; 0000-0002-2895-5824 ; 0000-0002-0633-5974</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,315,781,785,886,3747,27929,27930</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32228771$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://amu.hal.science/hal-02533039$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Tran, Thi Le Quyen</creatorcontrib><creatorcontrib>Anani, Hussein</creatorcontrib><creatorcontrib>Trinh, Ho Tinh</creatorcontrib><creatorcontrib>Pham, Thi Phuong Thao</creatorcontrib><creatorcontrib>Dang, Van Khoa</creatorcontrib><creatorcontrib>Ho, Viet My</creatorcontrib><creatorcontrib>Bui, Nguyen Hai Linh</creatorcontrib><creatorcontrib>Nguyen, Nhu Hung</creatorcontrib><creatorcontrib>Raoult, Didier</creatorcontrib><creatorcontrib>Trinh, Thanh Trung</creatorcontrib><creatorcontrib>Fournier, Pierre Edouard</creatorcontrib><title>Chitinophaga vietnamensis sp. nov. , a multi-drug resistant bacterium infecting humans</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>We describe a new multidrug resistant
species that was isolated from patients with type 2 diabetes in Vietnam. Strain BD 01
was cultivated in 2017 from a blood sample of a patient suffering from bacteremia. Strain VP 7442 was isolated in 2018 from a pleural fluid sample of a patient who had presented with lung abscess and pleural effusion. Both strains are aerobic, Gram-negative, non-motile and non-spore-forming. The 16S rRNA gene sequences of both strains are 100 % similar and share a highest 16S sequence identity with
MRP-15
of 97.42 %. Their predominant fatty acid is iso-C
(73.8 % for strain BD 01
and 79.8 % for strain VP 7442). The draft genome sizes of strains BD 01
and VP 7442 are 6 308 408 and 6 308 579 bp, respectively. They are resistant to beta-lactams, aminoglycosides, fluoroquinolones, metronidazole, fosfomycin, vancomycin and macrolides, and exhibit 20 and 18 antimicrobial resistance-related genes, respectively. Using the multiphasic taxonogenomic approach, we propose that strains BD 01
(=CSUR P9622=VTCC 70981) and VP 7442 (=CSUR P9623=VTCC 70982) represent a new species, for which we propose the name
sp. nov. Strain BD 01
was chosen as type strain of
sp. nov.</description><subject>Bacteremia</subject><subject>Bacterial Typing Techniques</subject><subject>Bacteriology</subject><subject>Bacteroidetes - classification</subject><subject>Bacteroidetes - isolation & purification</subject><subject>Base Composition</subject><subject>Cardiology and cardiovascular system</subject><subject>Diabetes Mellitus, Type 2</subject><subject>DNA, Bacterial - genetics</subject><subject>Drug Resistance, Multiple, Bacterial</subject><subject>Emerging diseases</subject><subject>Fatty Acids - chemistry</subject><subject>Human health and pathology</subject><subject>Humans</subject><subject>Infectious diseases</subject><subject>Life Sciences</subject><subject>Lung Abscess - microbiology</subject><subject>Microbiology and Parasitology</subject><subject>Parasitology</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Vietnam</subject><subject>Virology</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kM9LwzAYhoMobk6vHiVHBVu_JG3aHsdQJwy8qNfwtU3XjP6yaQf-92Z27vLl482TF_IQcsvAZ5AkT2Znde2DDyASGZ-ROQuk9EIQwflp53JGrqzdAbgA4JLMBOc8jiI2J1-r0gymabsSt0j3Rg8N1rqxxlLb-bRp9z59pEjrsRqMl_fjlvba3Q7YDDTFbNC9GWtqmkJnrmdLy7HGxl6TiwIrq2-O54J8vjx_rNbe5v31bbXceBmPg9gTIpU84TlCJsIglFpEmMeYQJilMgsC7v4k0xxzQI08CUQQCjdYzuKCawliQR6m3hIr1fWmxv5HtWjUerlRhwx4KIRzs2eOvZ_Yrm-_R20HVRub6arCRrejVVzEIY94zLhD_QnN-tbaXhenbgbq4F39eVegJu_uwd2xe0xrnZ_wf9HiF0MQfX4</recordid><startdate>202003</startdate><enddate>202003</enddate><creator>Tran, Thi Le Quyen</creator><creator>Anani, Hussein</creator><creator>Trinh, Ho Tinh</creator><creator>Pham, Thi Phuong Thao</creator><creator>Dang, Van Khoa</creator><creator>Ho, Viet My</creator><creator>Bui, Nguyen Hai Linh</creator><creator>Nguyen, Nhu Hung</creator><creator>Raoult, Didier</creator><creator>Trinh, Thanh Trung</creator><creator>Fournier, Pierre Edouard</creator><general>Microbiology Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>1XC</scope><orcidid>https://orcid.org/0000-0001-5522-4181</orcidid><orcidid>https://orcid.org/0000-0001-8463-8885</orcidid><orcidid>https://orcid.org/0000-0002-2895-5824</orcidid><orcidid>https://orcid.org/0000-0002-0633-5974</orcidid></search><sort><creationdate>202003</creationdate><title>Chitinophaga vietnamensis sp. nov. , a multi-drug resistant bacterium infecting humans</title><author>Tran, Thi Le Quyen ; Anani, Hussein ; Trinh, Ho Tinh ; Pham, Thi Phuong Thao ; Dang, Van Khoa ; Ho, Viet My ; Bui, Nguyen Hai Linh ; Nguyen, Nhu Hung ; Raoult, Didier ; Trinh, Thanh Trung ; Fournier, Pierre Edouard</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2848-33b6292da0c35456e37ad8a905cb6c4429686bdad0aea29434534341d18f2e603</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Bacteremia</topic><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>Bacteroidetes - classification</topic><topic>Bacteroidetes - isolation & purification</topic><topic>Base Composition</topic><topic>Cardiology and cardiovascular system</topic><topic>Diabetes Mellitus, Type 2</topic><topic>DNA, Bacterial - genetics</topic><topic>Drug Resistance, Multiple, Bacterial</topic><topic>Emerging diseases</topic><topic>Fatty Acids - chemistry</topic><topic>Human health and pathology</topic><topic>Humans</topic><topic>Infectious diseases</topic><topic>Life Sciences</topic><topic>Lung Abscess - microbiology</topic><topic>Microbiology and Parasitology</topic><topic>Parasitology</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Vietnam</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tran, Thi Le Quyen</creatorcontrib><creatorcontrib>Anani, Hussein</creatorcontrib><creatorcontrib>Trinh, Ho Tinh</creatorcontrib><creatorcontrib>Pham, Thi Phuong Thao</creatorcontrib><creatorcontrib>Dang, Van Khoa</creatorcontrib><creatorcontrib>Ho, Viet My</creatorcontrib><creatorcontrib>Bui, Nguyen Hai Linh</creatorcontrib><creatorcontrib>Nguyen, Nhu Hung</creatorcontrib><creatorcontrib>Raoult, Didier</creatorcontrib><creatorcontrib>Trinh, Thanh Trung</creatorcontrib><creatorcontrib>Fournier, Pierre Edouard</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tran, Thi Le Quyen</au><au>Anani, Hussein</au><au>Trinh, Ho Tinh</au><au>Pham, Thi Phuong Thao</au><au>Dang, Van Khoa</au><au>Ho, Viet My</au><au>Bui, Nguyen Hai Linh</au><au>Nguyen, Nhu Hung</au><au>Raoult, Didier</au><au>Trinh, Thanh Trung</au><au>Fournier, Pierre Edouard</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Chitinophaga vietnamensis sp. nov. , a multi-drug resistant bacterium infecting humans</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2020-03</date><risdate>2020</risdate><volume>70</volume><issue>3</issue><spage>1758</spage><epage>1768</epage><pages>1758-1768</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>We describe a new multidrug resistant
species that was isolated from patients with type 2 diabetes in Vietnam. Strain BD 01
was cultivated in 2017 from a blood sample of a patient suffering from bacteremia. Strain VP 7442 was isolated in 2018 from a pleural fluid sample of a patient who had presented with lung abscess and pleural effusion. Both strains are aerobic, Gram-negative, non-motile and non-spore-forming. The 16S rRNA gene sequences of both strains are 100 % similar and share a highest 16S sequence identity with
MRP-15
of 97.42 %. Their predominant fatty acid is iso-C
(73.8 % for strain BD 01
and 79.8 % for strain VP 7442). The draft genome sizes of strains BD 01
and VP 7442 are 6 308 408 and 6 308 579 bp, respectively. They are resistant to beta-lactams, aminoglycosides, fluoroquinolones, metronidazole, fosfomycin, vancomycin and macrolides, and exhibit 20 and 18 antimicrobial resistance-related genes, respectively. Using the multiphasic taxonogenomic approach, we propose that strains BD 01
(=CSUR P9622=VTCC 70981) and VP 7442 (=CSUR P9623=VTCC 70982) represent a new species, for which we propose the name
sp. nov. Strain BD 01
was chosen as type strain of
sp. nov.</abstract><cop>England</cop><pub>Microbiology Society</pub><pmid>32228771</pmid><doi>10.1099/ijsem.0.003968</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0001-5522-4181</orcidid><orcidid>https://orcid.org/0000-0001-8463-8885</orcidid><orcidid>https://orcid.org/0000-0002-2895-5824</orcidid><orcidid>https://orcid.org/0000-0002-0633-5974</orcidid><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Bacteremia Bacterial Typing Techniques Bacteriology Bacteroidetes - classification Bacteroidetes - isolation & purification Base Composition Cardiology and cardiovascular system Diabetes Mellitus, Type 2 DNA, Bacterial - genetics Drug Resistance, Multiple, Bacterial Emerging diseases Fatty Acids - chemistry Human health and pathology Humans Infectious diseases Life Sciences Lung Abscess - microbiology Microbiology and Parasitology Parasitology Phylogeny RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Vietnam Virology |
| title | Chitinophaga vietnamensis sp. nov. , a multi-drug resistant bacterium infecting humans |
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