The multicatalytic compartment of propionyl-CoA synthase sequesters a toxic metabolite
Cells must cope with toxic or reactive intermediates formed during metabolism. One coping strategy is to sequester reactions that produce such intermediates within specialized compartments or tunnels connecting different active sites. Here, we show that propionyl-CoA synthase (PCS), an ∼ 400-kDa hom...
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Veröffentlicht in: | Nature chemical biology 2018-12, Vol.14 (12), p.1127-1132 |
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creator | Bernhardsgrütter, Iria Vögeli, Bastian Wagner, Tristan Peter, Dominik M. Cortina, Niña Socorro Kahnt, Jörg Bange, Gert Engilberge, Sylvain Girard, Eric Riobé, François Maury, Olivier Shima, Seigo Zarzycki, Jan Erb, Tobias J. |
description | Cells must cope with toxic or reactive intermediates formed during metabolism. One coping strategy is to sequester reactions that produce such intermediates within specialized compartments or tunnels connecting different active sites. Here, we show that propionyl-CoA synthase (PCS), an ∼ 400-kDa homodimer, three-domain fusion protein and the key enzyme of the 3-hydroxypropionate bi-cycle for CO
2
fixation, sequesters its reactive intermediate acrylyl-CoA. Structural analysis showed that PCS forms a multicatalytic reaction chamber. Kinetic analysis suggested that access to the reaction chamber and catalysis are synchronized by interdomain communication. The reaction chamber of PCS features three active sites and has a volume of only 33 nm
3
. As one of the smallest multireaction chambers described in biology, PCS may inspire the engineering of a new class of dynamically regulated nanoreactors.
Structural and biochemical analysis of propionyl-CoA synthase reveals that it forms a reaction chamber containing three active sites, which sequesters the reactive intermediate acrylyl-CoA during the conversion of 3-hydroxypropionate to propionyl-CoA. |
doi_str_mv | 10.1038/s41589-018-0153-x |
format | Article |
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2
fixation, sequesters its reactive intermediate acrylyl-CoA. Structural analysis showed that PCS forms a multicatalytic reaction chamber. Kinetic analysis suggested that access to the reaction chamber and catalysis are synchronized by interdomain communication. The reaction chamber of PCS features three active sites and has a volume of only 33 nm
3
. As one of the smallest multireaction chambers described in biology, PCS may inspire the engineering of a new class of dynamically regulated nanoreactors.
Structural and biochemical analysis of propionyl-CoA synthase reveals that it forms a reaction chamber containing three active sites, which sequesters the reactive intermediate acrylyl-CoA during the conversion of 3-hydroxypropionate to propionyl-CoA.</description><identifier>ISSN: 1552-4450</identifier><identifier>EISSN: 1552-4469</identifier><identifier>DOI: 10.1038/s41589-018-0153-x</identifier><identifier>PMID: 30374166</identifier><language>eng</language><publisher>New York: Nature Publishing Group US</publisher><subject>631/535/1266 ; 631/92/173 ; 631/92/607 ; Acyl Coenzyme A - metabolism ; Binding sites ; Biochemical Engineering ; Biochemistry ; Biochemistry, Molecular Biology ; Biology ; Bioorganic Chemistry ; Carbon dioxide ; Carbon dioxide fixation ; Carbon sequestration ; Catalysis ; Cell Biology ; Chemistry ; Chemistry and Materials Science ; Chemistry/Food Science ; Coenzyme A Ligases - chemistry ; Coenzyme A Ligases - genetics ; Coenzyme A Ligases - metabolism ; Crystallography, X-Ray ; Cytoplasm ; Enzymes ; Fusion protein ; Intermediates ; Kinetics ; Life Sciences ; Metabolism ; Metabolites ; Propionyl-CoA synthase ; Protein Domains ; Proteins ; Recombinant Fusion Proteins - chemistry ; Recombinant Fusion Proteins - genetics ; Recombinant Fusion Proteins - metabolism ; Scattering, Small Angle ; Sphingomonadaceae - enzymology ; Sphingomonadaceae - genetics ; Structural analysis ; Structural Biology ; Tunnels ; X-Ray Diffraction</subject><ispartof>Nature chemical biology, 2018-12, Vol.14 (12), p.1127-1132</ispartof><rights>The Author(s), under exclusive licence to Springer Nature America, Inc. 2018</rights><rights>Copyright Nature Publishing Group Dec 2018</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c449t-f35e92a7469c14532fe38ffc169503768a892b7838d70ce13d669c942992f1533</citedby><cites>FETCH-LOGICAL-c449t-f35e92a7469c14532fe38ffc169503768a892b7838d70ce13d669c942992f1533</cites><orcidid>0000-0001-7870-7311 ; 0000-0001-8680-6790 ; 0000-0002-6307-6497 ; 0000-0002-4639-643X ; 0000-0002-5758-6095 ; 0000-0001-6746-8132</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,315,781,785,886,27929,27930</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30374166$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.science/hal-01917162$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Bernhardsgrütter, Iria</creatorcontrib><creatorcontrib>Vögeli, Bastian</creatorcontrib><creatorcontrib>Wagner, Tristan</creatorcontrib><creatorcontrib>Peter, Dominik M.</creatorcontrib><creatorcontrib>Cortina, Niña Socorro</creatorcontrib><creatorcontrib>Kahnt, Jörg</creatorcontrib><creatorcontrib>Bange, Gert</creatorcontrib><creatorcontrib>Engilberge, Sylvain</creatorcontrib><creatorcontrib>Girard, Eric</creatorcontrib><creatorcontrib>Riobé, François</creatorcontrib><creatorcontrib>Maury, Olivier</creatorcontrib><creatorcontrib>Shima, Seigo</creatorcontrib><creatorcontrib>Zarzycki, Jan</creatorcontrib><creatorcontrib>Erb, Tobias J.</creatorcontrib><title>The multicatalytic compartment of propionyl-CoA synthase sequesters a toxic metabolite</title><title>Nature chemical biology</title><addtitle>Nat Chem Biol</addtitle><addtitle>Nat Chem Biol</addtitle><description>Cells must cope with toxic or reactive intermediates formed during metabolism. One coping strategy is to sequester reactions that produce such intermediates within specialized compartments or tunnels connecting different active sites. Here, we show that propionyl-CoA synthase (PCS), an ∼ 400-kDa homodimer, three-domain fusion protein and the key enzyme of the 3-hydroxypropionate bi-cycle for CO
2
fixation, sequesters its reactive intermediate acrylyl-CoA. Structural analysis showed that PCS forms a multicatalytic reaction chamber. Kinetic analysis suggested that access to the reaction chamber and catalysis are synchronized by interdomain communication. The reaction chamber of PCS features three active sites and has a volume of only 33 nm
3
. As one of the smallest multireaction chambers described in biology, PCS may inspire the engineering of a new class of dynamically regulated nanoreactors.
Structural and biochemical analysis of propionyl-CoA synthase reveals that it forms a reaction chamber containing three active sites, which sequesters the reactive intermediate acrylyl-CoA during the conversion of 3-hydroxypropionate to propionyl-CoA.</description><subject>631/535/1266</subject><subject>631/92/173</subject><subject>631/92/607</subject><subject>Acyl Coenzyme A - metabolism</subject><subject>Binding sites</subject><subject>Biochemical Engineering</subject><subject>Biochemistry</subject><subject>Biochemistry, Molecular Biology</subject><subject>Biology</subject><subject>Bioorganic Chemistry</subject><subject>Carbon dioxide</subject><subject>Carbon dioxide fixation</subject><subject>Carbon sequestration</subject><subject>Catalysis</subject><subject>Cell Biology</subject><subject>Chemistry</subject><subject>Chemistry and Materials Science</subject><subject>Chemistry/Food Science</subject><subject>Coenzyme A Ligases - chemistry</subject><subject>Coenzyme A Ligases - 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metabolite</atitle><jtitle>Nature chemical biology</jtitle><stitle>Nat Chem Biol</stitle><addtitle>Nat Chem Biol</addtitle><date>2018-12-01</date><risdate>2018</risdate><volume>14</volume><issue>12</issue><spage>1127</spage><epage>1132</epage><pages>1127-1132</pages><issn>1552-4450</issn><eissn>1552-4469</eissn><abstract>Cells must cope with toxic or reactive intermediates formed during metabolism. One coping strategy is to sequester reactions that produce such intermediates within specialized compartments or tunnels connecting different active sites. Here, we show that propionyl-CoA synthase (PCS), an ∼ 400-kDa homodimer, three-domain fusion protein and the key enzyme of the 3-hydroxypropionate bi-cycle for CO
2
fixation, sequesters its reactive intermediate acrylyl-CoA. Structural analysis showed that PCS forms a multicatalytic reaction chamber. Kinetic analysis suggested that access to the reaction chamber and catalysis are synchronized by interdomain communication. The reaction chamber of PCS features three active sites and has a volume of only 33 nm
3
. As one of the smallest multireaction chambers described in biology, PCS may inspire the engineering of a new class of dynamically regulated nanoreactors.
Structural and biochemical analysis of propionyl-CoA synthase reveals that it forms a reaction chamber containing three active sites, which sequesters the reactive intermediate acrylyl-CoA during the conversion of 3-hydroxypropionate to propionyl-CoA.</abstract><cop>New York</cop><pub>Nature Publishing Group US</pub><pmid>30374166</pmid><doi>10.1038/s41589-018-0153-x</doi><tpages>6</tpages><orcidid>https://orcid.org/0000-0001-7870-7311</orcidid><orcidid>https://orcid.org/0000-0001-8680-6790</orcidid><orcidid>https://orcid.org/0000-0002-6307-6497</orcidid><orcidid>https://orcid.org/0000-0002-4639-643X</orcidid><orcidid>https://orcid.org/0000-0002-5758-6095</orcidid><orcidid>https://orcid.org/0000-0001-6746-8132</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | 631/535/1266 631/92/173 631/92/607 Acyl Coenzyme A - metabolism Binding sites Biochemical Engineering Biochemistry Biochemistry, Molecular Biology Biology Bioorganic Chemistry Carbon dioxide Carbon dioxide fixation Carbon sequestration Catalysis Cell Biology Chemistry Chemistry and Materials Science Chemistry/Food Science Coenzyme A Ligases - chemistry Coenzyme A Ligases - genetics Coenzyme A Ligases - metabolism Crystallography, X-Ray Cytoplasm Enzymes Fusion protein Intermediates Kinetics Life Sciences Metabolism Metabolites Propionyl-CoA synthase Protein Domains Proteins Recombinant Fusion Proteins - chemistry Recombinant Fusion Proteins - genetics Recombinant Fusion Proteins - metabolism Scattering, Small Angle Sphingomonadaceae - enzymology Sphingomonadaceae - genetics Structural analysis Structural Biology Tunnels X-Ray Diffraction |
title | The multicatalytic compartment of propionyl-CoA synthase sequesters a toxic metabolite |
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