Soil microbial community structure and function relationships: A heat stress experiment
•Abundant and diversified microbial community in grassland increase stress resistance. Links between the microbial community structure and soil functions are unclear. The study of these relationships requires the development of highly specific experimental approaches. In this work, the soil microbia...
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Veröffentlicht in: | Applied soil ecology : a section of Agriculture, ecosystems & environment ecosystems & environment, 2015-02, Vol.86, p.121-130 |
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creator | Riah-Anglet, Wassila Trinsoutrot-Gattin, Isabelle Martin-Laurent, Fabrice Laroche-Ajzenberg, Emilie Norini, Marie-Paule Latour, Xavier Laval, Karine |
description | •Abundant and diversified microbial community in grassland increase stress resistance.
Links between the microbial community structure and soil functions are unclear. The study of these relationships requires the development of highly specific experimental approaches. In this work, the soil microbial community structure and function relationship was evaluated in relation to heat stress in a soil microcosm incubated at 17°C and 50°C. We selected a luvisol that included two land uses. Samples were taken from the soil of a long-term (>10 year) arable cropping plot (CC) and a permanent grassland (PG) (>25 years). The soil functions were evaluated by measuring the enzyme activities, including cellulase, N-acetyl-glucosaminidase, β-glucosidase, xylanase and dehydrogenase. The total microbial biomass was assayed by the quantification of the total DNA extracted from the microcosm soils. The abundance of total bacterial and fungal communities and different bacterial taxa were measured by qPCR rRNA genes. For both soil types, heat stress induced changes in the microbial community structure and soil functions. In most cases, the results yielded effects following heat treatment. All of the enzymes were inhibited except xylanase. Heat stress significantly reduced the total microbial biomass and fungal abundance in the soils. The abundance of the total bacterial community was not affected by heat stress. In the two soils, the dominant taxa were Actinobacteria (13–40%) and Bacteroidetes (14–32%), while Planctomycetes and Gammaproteobacteria exhibited lower abundance (0–3%). Changes in the microbial community structure and changes in the functions were correlated; the correlation was positive in the PG soil and negative in the CC soil. The changes in the CC soil structural and functional state were greater than of those observed in PG soil. Our initial hypothesis was confirmed, indeed, grassland soil is more resistant to drastic stress due to its highly abundant and highly diversified microbial community. These results represent a contribution to the understanding of soil microbial community structure and functions relationships. |
doi_str_mv | 10.1016/j.apsoil.2014.10.001 |
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Links between the microbial community structure and soil functions are unclear. The study of these relationships requires the development of highly specific experimental approaches. In this work, the soil microbial community structure and function relationship was evaluated in relation to heat stress in a soil microcosm incubated at 17°C and 50°C. We selected a luvisol that included two land uses. Samples were taken from the soil of a long-term (>10 year) arable cropping plot (CC) and a permanent grassland (PG) (>25 years). The soil functions were evaluated by measuring the enzyme activities, including cellulase, N-acetyl-glucosaminidase, β-glucosidase, xylanase and dehydrogenase. The total microbial biomass was assayed by the quantification of the total DNA extracted from the microcosm soils. The abundance of total bacterial and fungal communities and different bacterial taxa were measured by qPCR rRNA genes. For both soil types, heat stress induced changes in the microbial community structure and soil functions. In most cases, the results yielded effects following heat treatment. All of the enzymes were inhibited except xylanase. Heat stress significantly reduced the total microbial biomass and fungal abundance in the soils. The abundance of the total bacterial community was not affected by heat stress. In the two soils, the dominant taxa were Actinobacteria (13–40%) and Bacteroidetes (14–32%), while Planctomycetes and Gammaproteobacteria exhibited lower abundance (0–3%). Changes in the microbial community structure and changes in the functions were correlated; the correlation was positive in the PG soil and negative in the CC soil. The changes in the CC soil structural and functional state were greater than of those observed in PG soil. Our initial hypothesis was confirmed, indeed, grassland soil is more resistant to drastic stress due to its highly abundant and highly diversified microbial community. These results represent a contribution to the understanding of soil microbial community structure and functions relationships.</description><identifier>ISSN: 0929-1393</identifier><identifier>EISSN: 1873-0272</identifier><identifier>DOI: 10.1016/j.apsoil.2014.10.001</identifier><language>eng</language><publisher>Elsevier B.V</publisher><subject>Actinobacteria ; Bacterial taxa ; Environmental Sciences ; Enzymatic activities ; Heat stress ; Microbial diversity ; Planctomycetes ; Soil land use</subject><ispartof>Applied soil ecology : a section of Agriculture, ecosystems & environment, 2015-02, Vol.86, p.121-130</ispartof><rights>2014 Elsevier B.V.</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c373t-850382ddbd44aaaa55a84eaf0b8c2cd94804e12f3200be34efe411c8e9abe83e3</citedby><cites>FETCH-LOGICAL-c373t-850382ddbd44aaaa55a84eaf0b8c2cd94804e12f3200be34efe411c8e9abe83e3</cites><orcidid>0000-0001-6496-2389 ; 0000-0001-9410-8319 ; 0000-0001-6695-0875 ; 0000-0003-0314-8417</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.apsoil.2014.10.001$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>230,314,780,784,885,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://hal.science/hal-01771435$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Riah-Anglet, Wassila</creatorcontrib><creatorcontrib>Trinsoutrot-Gattin, Isabelle</creatorcontrib><creatorcontrib>Martin-Laurent, Fabrice</creatorcontrib><creatorcontrib>Laroche-Ajzenberg, Emilie</creatorcontrib><creatorcontrib>Norini, Marie-Paule</creatorcontrib><creatorcontrib>Latour, Xavier</creatorcontrib><creatorcontrib>Laval, Karine</creatorcontrib><title>Soil microbial community structure and function relationships: A heat stress experiment</title><title>Applied soil ecology : a section of Agriculture, ecosystems & environment</title><description>•Abundant and diversified microbial community in grassland increase stress resistance.
Links between the microbial community structure and soil functions are unclear. The study of these relationships requires the development of highly specific experimental approaches. In this work, the soil microbial community structure and function relationship was evaluated in relation to heat stress in a soil microcosm incubated at 17°C and 50°C. We selected a luvisol that included two land uses. Samples were taken from the soil of a long-term (>10 year) arable cropping plot (CC) and a permanent grassland (PG) (>25 years). The soil functions were evaluated by measuring the enzyme activities, including cellulase, N-acetyl-glucosaminidase, β-glucosidase, xylanase and dehydrogenase. The total microbial biomass was assayed by the quantification of the total DNA extracted from the microcosm soils. The abundance of total bacterial and fungal communities and different bacterial taxa were measured by qPCR rRNA genes. For both soil types, heat stress induced changes in the microbial community structure and soil functions. In most cases, the results yielded effects following heat treatment. All of the enzymes were inhibited except xylanase. Heat stress significantly reduced the total microbial biomass and fungal abundance in the soils. The abundance of the total bacterial community was not affected by heat stress. In the two soils, the dominant taxa were Actinobacteria (13–40%) and Bacteroidetes (14–32%), while Planctomycetes and Gammaproteobacteria exhibited lower abundance (0–3%). Changes in the microbial community structure and changes in the functions were correlated; the correlation was positive in the PG soil and negative in the CC soil. The changes in the CC soil structural and functional state were greater than of those observed in PG soil. Our initial hypothesis was confirmed, indeed, grassland soil is more resistant to drastic stress due to its highly abundant and highly diversified microbial community. These results represent a contribution to the understanding of soil microbial community structure and functions relationships.</description><subject>Actinobacteria</subject><subject>Bacterial taxa</subject><subject>Environmental Sciences</subject><subject>Enzymatic activities</subject><subject>Heat stress</subject><subject>Microbial diversity</subject><subject>Planctomycetes</subject><subject>Soil land use</subject><issn>0929-1393</issn><issn>1873-0272</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><recordid>eNp9kEtr3DAUhUVoINNJ_0EWWqYLT64eHstdFIahyRQGukhCl0KWrxkNflWSh-TfV8aly9yNLodzzkUfIXcMNgzY9uG8MWMYXLvhwGSSNgDsiqyYKkQGvOCfyApKXmZMlOKGfA7hDAA5V2JFfj-nHO2c9UPlTEvt0HVT7-I7DdFPNk4eqelr2ky9jW7oqcfWzEs4uTF8ozt6QhNnM4ZA8W1E7zrs4y25bkwb8Mu_d01eH3-87A_Z8dfTz_3umFlRiJipHITidV3VUpo0eW6URNNApSy3dSkVSGS8ERygQiGxQcmYVViaCpVAsSZfl96TafWYbhv_rgfj9GF31LMGrCiYFPmFJe_94h398GfCEHXngsW2NT0OU9BsuwWZ0PEiWeViTVxC8Nj872agZ-b6rBfmemY-qymYYt-XGKYvXxx6HazD3mLtPNqo68F9XPAXWbaNmg</recordid><startdate>20150201</startdate><enddate>20150201</enddate><creator>Riah-Anglet, Wassila</creator><creator>Trinsoutrot-Gattin, Isabelle</creator><creator>Martin-Laurent, Fabrice</creator><creator>Laroche-Ajzenberg, Emilie</creator><creator>Norini, Marie-Paule</creator><creator>Latour, Xavier</creator><creator>Laval, Karine</creator><general>Elsevier B.V</general><general>Elsevier</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7ST</scope><scope>7T7</scope><scope>7U6</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>SOI</scope><scope>1XC</scope><orcidid>https://orcid.org/0000-0001-6496-2389</orcidid><orcidid>https://orcid.org/0000-0001-9410-8319</orcidid><orcidid>https://orcid.org/0000-0001-6695-0875</orcidid><orcidid>https://orcid.org/0000-0003-0314-8417</orcidid></search><sort><creationdate>20150201</creationdate><title>Soil microbial community structure and function relationships: A heat stress experiment</title><author>Riah-Anglet, Wassila ; Trinsoutrot-Gattin, Isabelle ; Martin-Laurent, Fabrice ; Laroche-Ajzenberg, Emilie ; Norini, Marie-Paule ; Latour, Xavier ; Laval, Karine</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c373t-850382ddbd44aaaa55a84eaf0b8c2cd94804e12f3200be34efe411c8e9abe83e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Actinobacteria</topic><topic>Bacterial taxa</topic><topic>Environmental Sciences</topic><topic>Enzymatic activities</topic><topic>Heat stress</topic><topic>Microbial diversity</topic><topic>Planctomycetes</topic><topic>Soil land use</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Riah-Anglet, Wassila</creatorcontrib><creatorcontrib>Trinsoutrot-Gattin, Isabelle</creatorcontrib><creatorcontrib>Martin-Laurent, Fabrice</creatorcontrib><creatorcontrib>Laroche-Ajzenberg, Emilie</creatorcontrib><creatorcontrib>Norini, Marie-Paule</creatorcontrib><creatorcontrib>Latour, Xavier</creatorcontrib><creatorcontrib>Laval, Karine</creatorcontrib><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Environment Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Sustainability Science Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environment Abstracts</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>Applied soil ecology : a section of Agriculture, ecosystems & environment</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Riah-Anglet, Wassila</au><au>Trinsoutrot-Gattin, Isabelle</au><au>Martin-Laurent, Fabrice</au><au>Laroche-Ajzenberg, Emilie</au><au>Norini, Marie-Paule</au><au>Latour, Xavier</au><au>Laval, Karine</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Soil microbial community structure and function relationships: A heat stress experiment</atitle><jtitle>Applied soil ecology : a section of Agriculture, ecosystems & environment</jtitle><date>2015-02-01</date><risdate>2015</risdate><volume>86</volume><spage>121</spage><epage>130</epage><pages>121-130</pages><issn>0929-1393</issn><eissn>1873-0272</eissn><abstract>•Abundant and diversified microbial community in grassland increase stress resistance.
Links between the microbial community structure and soil functions are unclear. The study of these relationships requires the development of highly specific experimental approaches. In this work, the soil microbial community structure and function relationship was evaluated in relation to heat stress in a soil microcosm incubated at 17°C and 50°C. We selected a luvisol that included two land uses. Samples were taken from the soil of a long-term (>10 year) arable cropping plot (CC) and a permanent grassland (PG) (>25 years). The soil functions were evaluated by measuring the enzyme activities, including cellulase, N-acetyl-glucosaminidase, β-glucosidase, xylanase and dehydrogenase. The total microbial biomass was assayed by the quantification of the total DNA extracted from the microcosm soils. The abundance of total bacterial and fungal communities and different bacterial taxa were measured by qPCR rRNA genes. For both soil types, heat stress induced changes in the microbial community structure and soil functions. In most cases, the results yielded effects following heat treatment. All of the enzymes were inhibited except xylanase. Heat stress significantly reduced the total microbial biomass and fungal abundance in the soils. The abundance of the total bacterial community was not affected by heat stress. In the two soils, the dominant taxa were Actinobacteria (13–40%) and Bacteroidetes (14–32%), while Planctomycetes and Gammaproteobacteria exhibited lower abundance (0–3%). Changes in the microbial community structure and changes in the functions were correlated; the correlation was positive in the PG soil and negative in the CC soil. The changes in the CC soil structural and functional state were greater than of those observed in PG soil. Our initial hypothesis was confirmed, indeed, grassland soil is more resistant to drastic stress due to its highly abundant and highly diversified microbial community. These results represent a contribution to the understanding of soil microbial community structure and functions relationships.</abstract><pub>Elsevier B.V</pub><doi>10.1016/j.apsoil.2014.10.001</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0001-6496-2389</orcidid><orcidid>https://orcid.org/0000-0001-9410-8319</orcidid><orcidid>https://orcid.org/0000-0001-6695-0875</orcidid><orcidid>https://orcid.org/0000-0003-0314-8417</orcidid></addata></record> |
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subjects | Actinobacteria Bacterial taxa Environmental Sciences Enzymatic activities Heat stress Microbial diversity Planctomycetes Soil land use |
title | Soil microbial community structure and function relationships: A heat stress experiment |
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