Identification of Variants in the 4q35 Gene FAT1 in Patients with a Facioscapulohumeral Dystrophy-Like Phenotype

ABSTRACT Facioscapulohumeralmuscular dystrophy (FSHD) is linked to copy‐number reduction (N 

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Veröffentlicht in:Human mutation 2015-04, Vol.36 (4), p.443-453
Hauptverfasser: Puppo, Francesca, Dionnet, Eugenie, Gaillard, Marie-Cécile, Gaildrat, Pascaline, Castro, Christel, Vovan, Catherine, Bertaux, Karine, Bernard, Rafaelle, Attarian, Shahram, Goto, Kanako, Nishino, Ichizo, Hayashi, Yukiko, Magdinier, Frédérique, Krahn, Martin, Helmbacher, Françoise, Bartoli, Marc, Lévy, Nicolas
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container_end_page 453
container_issue 4
container_start_page 443
container_title Human mutation
container_volume 36
creator Puppo, Francesca
Dionnet, Eugenie
Gaillard, Marie-Cécile
Gaildrat, Pascaline
Castro, Christel
Vovan, Catherine
Bertaux, Karine
Bernard, Rafaelle
Attarian, Shahram
Goto, Kanako
Nishino, Ichizo
Hayashi, Yukiko
Magdinier, Frédérique
Krahn, Martin
Helmbacher, Françoise
Bartoli, Marc
Lévy, Nicolas
description ABSTRACT Facioscapulohumeralmuscular dystrophy (FSHD) is linked to copy‐number reduction (N 
doi_str_mv 10.1002/humu.22760
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This main form is indicated as FSHD1. FSHD‐like phenotypes may also appear in the absence of D4Z4 copy‐number reduction. Variants of the SMCHD1 gene have been reported to associate with D4Z4 hypomethylation in DUX4‐compatible haplotypes, thus defining FSHD2. Recently, mice carrying a muscle‐specific knock‐out of the protocadherin gene Fat1 or its constitutive hypomorphic allele were shown to develop muscular and nonmuscular defects mimicking human FSHD. Here, we report FAT1 variants in a group of patients presenting with neuromuscular symptoms reminiscent of FSHD. The patients do not carry D4Z4 copy‐number reduction, 4q hypomethylation, or SMCHD1 variants. However, abnormal splicing of the FAT1 transcript is predicted for all identified variants. To determine their pathogenicity, we elaborated a minigene approach coupled to an antisense oligonucleotide (AON) assay. In vitro, four out of five selected variants induced partial or complete alteration of splicing by creating new splice sites or modifying splicing regulators. AONs confirmed these effects. Altered transcripts may affect FAT1 protein interactions or stability. Altogether, our data suggest that defective FAT1 is associated with an FSHD‐like phenotype. This work identifies mutations in FAT1 gene, coding for a transmembrane protein expressed on transverse T tubules of muscle fibers. These mutations, that provoke splicing defects of FAT1 transcript, are carried in FSHD‐like patients.</description><identifier>ISSN: 1059-7794</identifier><identifier>EISSN: 1098-1004</identifier><identifier>DOI: 10.1002/humu.22760</identifier><identifier>PMID: 25615407</identifier><language>eng</language><publisher>United States: Blackwell Publishing Ltd</publisher><subject>Adolescent ; Adult ; Aged ; Alleles ; Alternative Splicing ; Cadherins - genetics ; Cellular Biology ; Child ; Child, Preschool ; Chromosomes, Human, Pair 4 ; DNA Methylation ; Exons ; facioscapulohumeral dystrophy ; FAT1-protocadherin ; Gene Expression ; Genes, Reporter ; Genetic Variation ; Genetics ; Genotype &amp; phenotype ; Human genetics ; Humans ; Infant ; Infant, Newborn ; Life Sciences ; Middle Aged ; Muscular Dystrophy, Facioscapulohumeral - diagnosis ; Muscular Dystrophy, Facioscapulohumeral - genetics ; Mutation ; Neurological disorders ; neuromuscular pathology ; Phenotype ; Polymorphism, Single Nucleotide ; Sequence Analysis, DNA ; Young Adult</subject><ispartof>Human mutation, 2015-04, Vol.36 (4), p.443-453</ispartof><rights>2015 WILEY PERIODICALS, INC.</rights><rights>Copyright © 2015 Wiley Periodicals, Inc.</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5320-c8be29d2a3ee79add4654d9cfaf628fc7de19c46919ae650f7872590ae1fbe703</citedby><cites>FETCH-LOGICAL-c5320-c8be29d2a3ee79add4654d9cfaf628fc7de19c46919ae650f7872590ae1fbe703</cites><orcidid>0000-0002-1020-802X ; 0000-0001-5171-6365 ; 0000-0002-0159-9559 ; 0000-0003-3339-9858 ; 0000-0002-7211-4694 ; 0000-0001-6822-1246 ; 0000-0002-9823-0810</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fhumu.22760$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fhumu.22760$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>230,314,776,780,881,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25615407$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://amu.hal.science/hal-01662841$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Puppo, Francesca</creatorcontrib><creatorcontrib>Dionnet, Eugenie</creatorcontrib><creatorcontrib>Gaillard, Marie-Cécile</creatorcontrib><creatorcontrib>Gaildrat, Pascaline</creatorcontrib><creatorcontrib>Castro, Christel</creatorcontrib><creatorcontrib>Vovan, Catherine</creatorcontrib><creatorcontrib>Bertaux, Karine</creatorcontrib><creatorcontrib>Bernard, Rafaelle</creatorcontrib><creatorcontrib>Attarian, Shahram</creatorcontrib><creatorcontrib>Goto, Kanako</creatorcontrib><creatorcontrib>Nishino, Ichizo</creatorcontrib><creatorcontrib>Hayashi, Yukiko</creatorcontrib><creatorcontrib>Magdinier, Frédérique</creatorcontrib><creatorcontrib>Krahn, Martin</creatorcontrib><creatorcontrib>Helmbacher, Françoise</creatorcontrib><creatorcontrib>Bartoli, Marc</creatorcontrib><creatorcontrib>Lévy, Nicolas</creatorcontrib><title>Identification of Variants in the 4q35 Gene FAT1 in Patients with a Facioscapulohumeral Dystrophy-Like Phenotype</title><title>Human mutation</title><addtitle>Human Mutation</addtitle><description>ABSTRACT Facioscapulohumeralmuscular dystrophy (FSHD) is linked to copy‐number reduction (N &lt; 10) of the 4q D4Z4 subtelomeric array, in association with DUX4‐permissive haplotypes. This main form is indicated as FSHD1. FSHD‐like phenotypes may also appear in the absence of D4Z4 copy‐number reduction. Variants of the SMCHD1 gene have been reported to associate with D4Z4 hypomethylation in DUX4‐compatible haplotypes, thus defining FSHD2. Recently, mice carrying a muscle‐specific knock‐out of the protocadherin gene Fat1 or its constitutive hypomorphic allele were shown to develop muscular and nonmuscular defects mimicking human FSHD. Here, we report FAT1 variants in a group of patients presenting with neuromuscular symptoms reminiscent of FSHD. The patients do not carry D4Z4 copy‐number reduction, 4q hypomethylation, or SMCHD1 variants. However, abnormal splicing of the FAT1 transcript is predicted for all identified variants. To determine their pathogenicity, we elaborated a minigene approach coupled to an antisense oligonucleotide (AON) assay. In vitro, four out of five selected variants induced partial or complete alteration of splicing by creating new splice sites or modifying splicing regulators. AONs confirmed these effects. Altered transcripts may affect FAT1 protein interactions or stability. Altogether, our data suggest that defective FAT1 is associated with an FSHD‐like phenotype. This work identifies mutations in FAT1 gene, coding for a transmembrane protein expressed on transverse T tubules of muscle fibers. These mutations, that provoke splicing defects of FAT1 transcript, are carried in FSHD‐like patients.</description><subject>Adolescent</subject><subject>Adult</subject><subject>Aged</subject><subject>Alleles</subject><subject>Alternative Splicing</subject><subject>Cadherins - genetics</subject><subject>Cellular Biology</subject><subject>Child</subject><subject>Child, Preschool</subject><subject>Chromosomes, Human, Pair 4</subject><subject>DNA Methylation</subject><subject>Exons</subject><subject>facioscapulohumeral dystrophy</subject><subject>FAT1-protocadherin</subject><subject>Gene Expression</subject><subject>Genes, Reporter</subject><subject>Genetic Variation</subject><subject>Genetics</subject><subject>Genotype &amp; phenotype</subject><subject>Human genetics</subject><subject>Humans</subject><subject>Infant</subject><subject>Infant, Newborn</subject><subject>Life Sciences</subject><subject>Middle Aged</subject><subject>Muscular Dystrophy, Facioscapulohumeral - diagnosis</subject><subject>Muscular Dystrophy, Facioscapulohumeral - genetics</subject><subject>Mutation</subject><subject>Neurological disorders</subject><subject>neuromuscular pathology</subject><subject>Phenotype</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Sequence Analysis, DNA</subject><subject>Young Adult</subject><issn>1059-7794</issn><issn>1098-1004</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqN0c9v0zAUB_AIgdgYXPgDkCUuAynDTvwjPlaDtpM6KFI7jpbrvCje0jizE0b-exy69cABcbGtp4-_ek8vSd4SfEEwzj7Vw364yDLB8bPklGBZpLFMn09vJlMhJD1JXoVwizEuGMtfJicZ44RRLE6T7qqEtreVNbq3rkWuQjfaW932AdkW9TUgep8ztIAW0Hy2IVN1HS1M4sH2NdJoro11wehuaFxsBrxu0Ocx9N519Ziu7B2gdQ2t68cOXicvKt0EePN4nyXb-ZfN5TJdfVtcXc5WqWF5hlNT7CCTZaZzACF1WVLOaClNpSueFZURJRBpKJdEauAMV6IQGZNYA6l2IHB-lnw45Na6UZ23e-1H5bRVy9lKTTVMeEyi5CeJ9vxgO-_uBwi92ttgoGl0C24IinCR50U8-X9QLikjQohI3_9Fb93g2zj0pISgnGIa1ceDMt6F4KE6NkuwmtarpvWqP-uN-N1j5LDbQ3mkT_uMgBzAg21g_EeUWm6vt0-h6eGPDT38Ov7R_k7FuQVTP74uFLv5vphfs41a578B8g69fA</recordid><startdate>201504</startdate><enddate>201504</enddate><creator>Puppo, Francesca</creator><creator>Dionnet, Eugenie</creator><creator>Gaillard, Marie-Cécile</creator><creator>Gaildrat, Pascaline</creator><creator>Castro, Christel</creator><creator>Vovan, Catherine</creator><creator>Bertaux, Karine</creator><creator>Bernard, Rafaelle</creator><creator>Attarian, Shahram</creator><creator>Goto, Kanako</creator><creator>Nishino, Ichizo</creator><creator>Hayashi, Yukiko</creator><creator>Magdinier, Frédérique</creator><creator>Krahn, Martin</creator><creator>Helmbacher, Françoise</creator><creator>Bartoli, Marc</creator><creator>Lévy, Nicolas</creator><general>Blackwell Publishing Ltd</general><general>Hindawi Limited</general><general>Wiley</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7TK</scope><scope>8FD</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>1XC</scope><scope>VOOES</scope><orcidid>https://orcid.org/0000-0002-1020-802X</orcidid><orcidid>https://orcid.org/0000-0001-5171-6365</orcidid><orcidid>https://orcid.org/0000-0002-0159-9559</orcidid><orcidid>https://orcid.org/0000-0003-3339-9858</orcidid><orcidid>https://orcid.org/0000-0002-7211-4694</orcidid><orcidid>https://orcid.org/0000-0001-6822-1246</orcidid><orcidid>https://orcid.org/0000-0002-9823-0810</orcidid></search><sort><creationdate>201504</creationdate><title>Identification of Variants in the 4q35 Gene FAT1 in Patients with a Facioscapulohumeral Dystrophy-Like Phenotype</title><author>Puppo, Francesca ; Dionnet, Eugenie ; Gaillard, Marie-Cécile ; Gaildrat, Pascaline ; Castro, Christel ; Vovan, Catherine ; Bertaux, Karine ; Bernard, Rafaelle ; Attarian, Shahram ; Goto, Kanako ; Nishino, Ichizo ; Hayashi, Yukiko ; Magdinier, Frédérique ; Krahn, Martin ; Helmbacher, Françoise ; Bartoli, Marc ; Lévy, Nicolas</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5320-c8be29d2a3ee79add4654d9cfaf628fc7de19c46919ae650f7872590ae1fbe703</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Adolescent</topic><topic>Adult</topic><topic>Aged</topic><topic>Alleles</topic><topic>Alternative Splicing</topic><topic>Cadherins - genetics</topic><topic>Cellular Biology</topic><topic>Child</topic><topic>Child, Preschool</topic><topic>Chromosomes, Human, Pair 4</topic><topic>DNA Methylation</topic><topic>Exons</topic><topic>facioscapulohumeral dystrophy</topic><topic>FAT1-protocadherin</topic><topic>Gene Expression</topic><topic>Genes, Reporter</topic><topic>Genetic Variation</topic><topic>Genetics</topic><topic>Genotype &amp; phenotype</topic><topic>Human genetics</topic><topic>Humans</topic><topic>Infant</topic><topic>Infant, Newborn</topic><topic>Life Sciences</topic><topic>Middle Aged</topic><topic>Muscular Dystrophy, Facioscapulohumeral - diagnosis</topic><topic>Muscular Dystrophy, Facioscapulohumeral - genetics</topic><topic>Mutation</topic><topic>Neurological disorders</topic><topic>neuromuscular pathology</topic><topic>Phenotype</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Sequence Analysis, DNA</topic><topic>Young Adult</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Puppo, Francesca</creatorcontrib><creatorcontrib>Dionnet, Eugenie</creatorcontrib><creatorcontrib>Gaillard, Marie-Cécile</creatorcontrib><creatorcontrib>Gaildrat, Pascaline</creatorcontrib><creatorcontrib>Castro, Christel</creatorcontrib><creatorcontrib>Vovan, Catherine</creatorcontrib><creatorcontrib>Bertaux, Karine</creatorcontrib><creatorcontrib>Bernard, Rafaelle</creatorcontrib><creatorcontrib>Attarian, Shahram</creatorcontrib><creatorcontrib>Goto, Kanako</creatorcontrib><creatorcontrib>Nishino, Ichizo</creatorcontrib><creatorcontrib>Hayashi, Yukiko</creatorcontrib><creatorcontrib>Magdinier, Frédérique</creatorcontrib><creatorcontrib>Krahn, Martin</creatorcontrib><creatorcontrib>Helmbacher, Françoise</creatorcontrib><creatorcontrib>Bartoli, Marc</creatorcontrib><creatorcontrib>Lévy, Nicolas</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium &amp; 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This main form is indicated as FSHD1. FSHD‐like phenotypes may also appear in the absence of D4Z4 copy‐number reduction. Variants of the SMCHD1 gene have been reported to associate with D4Z4 hypomethylation in DUX4‐compatible haplotypes, thus defining FSHD2. Recently, mice carrying a muscle‐specific knock‐out of the protocadherin gene Fat1 or its constitutive hypomorphic allele were shown to develop muscular and nonmuscular defects mimicking human FSHD. Here, we report FAT1 variants in a group of patients presenting with neuromuscular symptoms reminiscent of FSHD. The patients do not carry D4Z4 copy‐number reduction, 4q hypomethylation, or SMCHD1 variants. However, abnormal splicing of the FAT1 transcript is predicted for all identified variants. To determine their pathogenicity, we elaborated a minigene approach coupled to an antisense oligonucleotide (AON) assay. In vitro, four out of five selected variants induced partial or complete alteration of splicing by creating new splice sites or modifying splicing regulators. AONs confirmed these effects. Altered transcripts may affect FAT1 protein interactions or stability. Altogether, our data suggest that defective FAT1 is associated with an FSHD‐like phenotype. This work identifies mutations in FAT1 gene, coding for a transmembrane protein expressed on transverse T tubules of muscle fibers. 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ispartof Human mutation, 2015-04, Vol.36 (4), p.443-453
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language eng
recordid cdi_hal_primary_oai_HAL_hal_01662841v1
source Wiley Online Library - AutoHoldings Journals; MEDLINE
subjects Adolescent
Adult
Aged
Alleles
Alternative Splicing
Cadherins - genetics
Cellular Biology
Child
Child, Preschool
Chromosomes, Human, Pair 4
DNA Methylation
Exons
facioscapulohumeral dystrophy
FAT1-protocadherin
Gene Expression
Genes, Reporter
Genetic Variation
Genetics
Genotype & phenotype
Human genetics
Humans
Infant
Infant, Newborn
Life Sciences
Middle Aged
Muscular Dystrophy, Facioscapulohumeral - diagnosis
Muscular Dystrophy, Facioscapulohumeral - genetics
Mutation
Neurological disorders
neuromuscular pathology
Phenotype
Polymorphism, Single Nucleotide
Sequence Analysis, DNA
Young Adult
title Identification of Variants in the 4q35 Gene FAT1 in Patients with a Facioscapulohumeral Dystrophy-Like Phenotype
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