Modeling Microbial Decomposition in Real 3D Soil Structures Using Partial Differential Equations
Partial Differential Equations (PDEs) have been already widely used to simulate various complex phenomena in porous media. This paper is one of the first attempts to apply PDEs for simulating in real 3D structures. We apply this scheme to the specific case study of the microbial decomposition of org...
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Veröffentlicht in: | International journal of geosciences 2013-12, Vol.4 (10A), p.15-15 |
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creator | Nguyen-Ngoc, Doanh Leye, Babacar Monga, Olivier Garnier, Patricia Nunan, Naoise |
description | Partial Differential Equations (PDEs) have been already widely used to simulate various complex phenomena in porous media. This paper is one of the first attempts to apply PDEs for simulating in real 3D structures. We apply this scheme to the specific case study of the microbial decomposition of organic matter in soil pore space. We got a 3D geometrical representation of the pore space relating to a network of volume primitives. A mesh of the pore space is then created by using the network. PDEs system is solved by free finite elements solver Freefem3d in the particular mesh. We validate our PDEs model to experimental data with 3D Computed Tomography (CT) images of soil samples. Regarding the current state of art on soil organic matter decay models, our approach allows taking into account precise 3D spatialization of the decomposition process by a pore space geometry description. |
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This paper is one of the first attempts to apply PDEs for simulating in real 3D structures. We apply this scheme to the specific case study of the microbial decomposition of organic matter in soil pore space. We got a 3D geometrical representation of the pore space relating to a network of volume primitives. A mesh of the pore space is then created by using the network. PDEs system is solved by free finite elements solver Freefem3d in the particular mesh. We validate our PDEs model to experimental data with 3D Computed Tomography (CT) images of soil samples. 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Regarding the current state of art on soil organic matter decay models, our approach allows taking into account precise 3D spatialization of the decomposition process by a pore space geometry description.</description><subject>Decomposition</subject><subject>Finite element method</subject><subject>Life Sciences</subject><subject>Mathematical models</subject><subject>Microorganisms</subject><subject>Partial differential equations</subject><subject>Porosity</subject><subject>Soil (material)</subject><subject>Three dimensional</subject><issn>2156-8359</issn><issn>2156-8367</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><recordid>eNqFkc9PwjAUxxejiQS5e9xRD8P-XNcjARQTiEbkXLvSYslYod1M_O_tgHD1Xfr68vl-X9NvktxDMCQI5092uxkiAPGQQDACAF8lPQRpnhU4Z9eXnvLbZBDCFsSiAEJU9JKvhVvrytabdGGVd6WVVTrRyu32LtjGujq1dfqh4xRP0qWzVbpsfKua1uuQrkInfJe-OcqsMdrr-niZHlrZycNdcmNkFfTgfPaT1fP0czzL5m8vr-PRPJOIYpwZJRmDiIOSSUgBJ0qWsijXZs05paYghjFlKAHIcAILiErMCEJaIlVoVmjcTx5Pvt-yEntvd9L_CietmI3mopsBmAMYvX5gZB9O7N67Q6tDI3Y2KF1VstauDQLmDMZVnJH_UQpyzHNOWETBCY3_GILX5vIMCEQXk4gxiS4mcY4J_wFzAYRE</recordid><startdate>20131201</startdate><enddate>20131201</enddate><creator>Nguyen-Ngoc, Doanh</creator><creator>Leye, Babacar</creator><creator>Monga, Olivier</creator><creator>Garnier, Patricia</creator><creator>Nunan, Naoise</creator><general>Scientific Research</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>H8D</scope><scope>KR7</scope><scope>L7M</scope><scope>1XC</scope><orcidid>https://orcid.org/0000-0003-4528-5997</orcidid><orcidid>https://orcid.org/0000-0003-3448-7171</orcidid></search><sort><creationdate>20131201</creationdate><title>Modeling Microbial Decomposition in Real 3D Soil Structures Using Partial Differential Equations</title><author>Nguyen-Ngoc, Doanh ; Leye, Babacar ; Monga, Olivier ; Garnier, Patricia ; Nunan, Naoise</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a2533-fca771290b7a15094caba8bdfd9955f84f77cf5402f941812b37422ea2c8e78e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Decomposition</topic><topic>Finite element method</topic><topic>Life Sciences</topic><topic>Mathematical models</topic><topic>Microorganisms</topic><topic>Partial differential equations</topic><topic>Porosity</topic><topic>Soil (material)</topic><topic>Three dimensional</topic><toplevel>online_resources</toplevel><creatorcontrib>Nguyen-Ngoc, Doanh</creatorcontrib><creatorcontrib>Leye, Babacar</creatorcontrib><creatorcontrib>Monga, Olivier</creatorcontrib><creatorcontrib>Garnier, Patricia</creatorcontrib><creatorcontrib>Nunan, Naoise</creatorcontrib><collection>CrossRef</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Aerospace Database</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>International journal of geosciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nguyen-Ngoc, Doanh</au><au>Leye, Babacar</au><au>Monga, Olivier</au><au>Garnier, Patricia</au><au>Nunan, Naoise</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Modeling Microbial Decomposition in Real 3D Soil Structures Using Partial Differential Equations</atitle><jtitle>International journal of geosciences</jtitle><date>2013-12-01</date><risdate>2013</risdate><volume>4</volume><issue>10A</issue><spage>15</spage><epage>15</epage><pages>15-15</pages><issn>2156-8359</issn><eissn>2156-8367</eissn><abstract>Partial Differential Equations (PDEs) have been already widely used to simulate various complex phenomena in porous media. This paper is one of the first attempts to apply PDEs for simulating in real 3D structures. We apply this scheme to the specific case study of the microbial decomposition of organic matter in soil pore space. We got a 3D geometrical representation of the pore space relating to a network of volume primitives. A mesh of the pore space is then created by using the network. PDEs system is solved by free finite elements solver Freefem3d in the particular mesh. We validate our PDEs model to experimental data with 3D Computed Tomography (CT) images of soil samples. 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subjects | Decomposition Finite element method Life Sciences Mathematical models Microorganisms Partial differential equations Porosity Soil (material) Three dimensional |
title | Modeling Microbial Decomposition in Real 3D Soil Structures Using Partial Differential Equations |
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