Characterization of the Conformational Probability of N-Acetyl-Phenylalanyl-NH2 by RHF, DFT, and MP2 Computation and AIM Analyses, Confirmed by Jet-Cooled Infrared Data
Computational and experimental determinations were carried out in parallel on the conformational probability of N-Acetyl-Phenylalanine-NH2 (NAPA). Ab initio computations were completed at the BLYP/6-311G(df,p), B3LYP/6-31G(d), B3LYP/6-31G(d,p), and B3LYP/6-31+G(d) levels of theory, labeled L/61fp, B...
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creator | Chass, Gregory A Mirasol, Reinard S Setiadi, David H Tang, Ting-Hua Chin, Wutharath Mons, Michel Dimicoli, Iliana Dognon, Jean-Pierre Viskolcz, Bela Lovas, Sándor Penke, Botond Csizmadia, Imre G |
description | Computational and experimental determinations were carried out in parallel on the conformational probability of N-Acetyl-Phenylalanine-NH2 (NAPA). Ab initio computations were completed at the BLYP/6-311G(df,p), B3LYP/6-31G(d), B3LYP/6-31G(d,p), and B3LYP/6-31+G(d) levels of theory, labeled L/61fp, B/6, B/6p, and B/6+, respectively. Three experimentally identified conformers were compared with theoretical data, confirming their identities as the βL anti , γL gauche+ , and γL gauche- (BACKBONESIDECHAIN) conformers. Evidence comes from matching experimental and theoretical data for all three constituent N−H stretches of NAPA, with a ΔExperimental - Theoretical = ∼1−3 cm-1, ∼0−5 cm-1, and ∼1−6 cm-1, at the L/61fp and B/6+ levels, respectively. Corrected-ZPE relative energies were computed to be 0.14, 0.00, 0.26 and 0.00, 0.67, 0.57 (kcal*mol-1) for the βL anti , γ L gauche+ , and γ L gauche- conformers, respectively, at the L/61fp and B/6+ levels, respectively. The MP2/6-31+G(d) level of theory was subsequently found to give similar relative energies. Characterization of the intramolecular interactions responsible for red and blue shifting of the N−H stretches showed the existence of the following intramolecular interactions: CO[i]- - -HN[i], (Ar[i])-Cγ- - -HN[i+1], (Ar[i])-Cδ-H- - -OC[i-1] for βL anti ; CO[i-1]- - -HN[i+1], (Ar[i])-Cγ- - -HN[i+1], (Ar[i])-C−H- - -OC[i] for γL gauche+ ; and C=O[i - 1]- - -HN[i+1] for γL gauche- . Each of these interactions were further investigated and subsequently characterized by orbital population and Atoms-In-Molecules (AIM) analyses, with the identity of overlap and bond critical points (BCP) serving as ‘scoring criteria', respectively. Experimental and theoretical carbonyl stretches were also compared and showed good agreement, adding further strength to the synergy between experiment and theory. |
doi_str_mv | 10.1021/jp040720i |
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Ab initio computations were completed at the BLYP/6-311G(df,p), B3LYP/6-31G(d), B3LYP/6-31G(d,p), and B3LYP/6-31+G(d) levels of theory, labeled L/61fp, B/6, B/6p, and B/6+, respectively. Three experimentally identified conformers were compared with theoretical data, confirming their identities as the βL anti , γL gauche+ , and γL gauche- (BACKBONESIDECHAIN) conformers. Evidence comes from matching experimental and theoretical data for all three constituent N−H stretches of NAPA, with a ΔExperimental - Theoretical = ∼1−3 cm-1, ∼0−5 cm-1, and ∼1−6 cm-1, at the L/61fp and B/6+ levels, respectively. Corrected-ZPE relative energies were computed to be 0.14, 0.00, 0.26 and 0.00, 0.67, 0.57 (kcal*mol-1) for the βL anti , γ L gauche+ , and γ L gauche- conformers, respectively, at the L/61fp and B/6+ levels, respectively. The MP2/6-31+G(d) level of theory was subsequently found to give similar relative energies. Characterization of the intramolecular interactions responsible for red and blue shifting of the N−H stretches showed the existence of the following intramolecular interactions: CO[i]- - -HN[i], (Ar[i])-Cγ- - -HN[i+1], (Ar[i])-Cδ-H- - -OC[i-1] for βL anti ; CO[i-1]- - -HN[i+1], (Ar[i])-Cγ- - -HN[i+1], (Ar[i])-C−H- - -OC[i] for γL gauche+ ; and C=O[i - 1]- - -HN[i+1] for γL gauche- . Each of these interactions were further investigated and subsequently characterized by orbital population and Atoms-In-Molecules (AIM) analyses, with the identity of overlap and bond critical points (BCP) serving as ‘scoring criteria', respectively. Experimental and theoretical carbonyl stretches were also compared and showed good agreement, adding further strength to the synergy between experiment and theory.</description><identifier>ISSN: 1089-5639</identifier><identifier>EISSN: 1520-5215</identifier><identifier>DOI: 10.1021/jp040720i</identifier><identifier>PMID: 16839052</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Alanine - analogs & derivatives ; Alanine - chemistry ; Amides - chemistry ; Chemical Sciences ; Cold Temperature ; Computer Simulation ; Electrons ; Glycine - analogs & derivatives ; Glycine - chemistry ; Hydrogen Bonding ; Infrared Rays ; Models, Molecular ; Molecular Conformation ; or physical chemistry ; Phenylalanine - analogs & derivatives ; Phenylalanine - chemistry ; Spectrophotometry, Infrared ; Theoretical and</subject><ispartof>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory, 2005-06, Vol.109 (24), p.5289-5302</ispartof><rights>Copyright © 2005 American Chemical Society</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/jp040720i$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/jp040720i$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>230,315,782,786,887,27083,27931,27932,56745,56795</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16839052$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.science/hal-00091955$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Chass, Gregory A</creatorcontrib><creatorcontrib>Mirasol, Reinard S</creatorcontrib><creatorcontrib>Setiadi, David H</creatorcontrib><creatorcontrib>Tang, Ting-Hua</creatorcontrib><creatorcontrib>Chin, Wutharath</creatorcontrib><creatorcontrib>Mons, Michel</creatorcontrib><creatorcontrib>Dimicoli, Iliana</creatorcontrib><creatorcontrib>Dognon, Jean-Pierre</creatorcontrib><creatorcontrib>Viskolcz, Bela</creatorcontrib><creatorcontrib>Lovas, Sándor</creatorcontrib><creatorcontrib>Penke, Botond</creatorcontrib><creatorcontrib>Csizmadia, Imre G</creatorcontrib><title>Characterization of the Conformational Probability of N-Acetyl-Phenylalanyl-NH2 by RHF, DFT, and MP2 Computation and AIM Analyses, Confirmed by Jet-Cooled Infrared Data</title><title>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory</title><addtitle>J. Phys. Chem. A</addtitle><description>Computational and experimental determinations were carried out in parallel on the conformational probability of N-Acetyl-Phenylalanine-NH2 (NAPA). Ab initio computations were completed at the BLYP/6-311G(df,p), B3LYP/6-31G(d), B3LYP/6-31G(d,p), and B3LYP/6-31+G(d) levels of theory, labeled L/61fp, B/6, B/6p, and B/6+, respectively. Three experimentally identified conformers were compared with theoretical data, confirming their identities as the βL anti , γL gauche+ , and γL gauche- (BACKBONESIDECHAIN) conformers. Evidence comes from matching experimental and theoretical data for all three constituent N−H stretches of NAPA, with a ΔExperimental - Theoretical = ∼1−3 cm-1, ∼0−5 cm-1, and ∼1−6 cm-1, at the L/61fp and B/6+ levels, respectively. Corrected-ZPE relative energies were computed to be 0.14, 0.00, 0.26 and 0.00, 0.67, 0.57 (kcal*mol-1) for the βL anti , γ L gauche+ , and γ L gauche- conformers, respectively, at the L/61fp and B/6+ levels, respectively. The MP2/6-31+G(d) level of theory was subsequently found to give similar relative energies. Characterization of the intramolecular interactions responsible for red and blue shifting of the N−H stretches showed the existence of the following intramolecular interactions: CO[i]- - -HN[i], (Ar[i])-Cγ- - -HN[i+1], (Ar[i])-Cδ-H- - -OC[i-1] for βL anti ; CO[i-1]- - -HN[i+1], (Ar[i])-Cγ- - -HN[i+1], (Ar[i])-C−H- - -OC[i] for γL gauche+ ; and C=O[i - 1]- - -HN[i+1] for γL gauche- . Each of these interactions were further investigated and subsequently characterized by orbital population and Atoms-In-Molecules (AIM) analyses, with the identity of overlap and bond critical points (BCP) serving as ‘scoring criteria', respectively. Experimental and theoretical carbonyl stretches were also compared and showed good agreement, adding further strength to the synergy between experiment and theory.</description><subject>Alanine - analogs & derivatives</subject><subject>Alanine - chemistry</subject><subject>Amides - chemistry</subject><subject>Chemical Sciences</subject><subject>Cold Temperature</subject><subject>Computer Simulation</subject><subject>Electrons</subject><subject>Glycine - analogs & derivatives</subject><subject>Glycine - chemistry</subject><subject>Hydrogen Bonding</subject><subject>Infrared Rays</subject><subject>Models, Molecular</subject><subject>Molecular Conformation</subject><subject>or physical chemistry</subject><subject>Phenylalanine - analogs & derivatives</subject><subject>Phenylalanine - chemistry</subject><subject>Spectrophotometry, Infrared</subject><subject>Theoretical and</subject><issn>1089-5639</issn><issn>1520-5215</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9ksGO0zAQhiMEYpeFAy-AcmElpBpsJ07sY5Sl20K3FCgXLtYkdVSXpC62gwhPxGPibJZe7JnxN7_l3xNFLwl-SzAl7w4nnOKcYv0ouiSMYsQoYY9DjLlALEvERfTMuQPGmCQ0fRpdkIwnAjN6Gf0t92Ch9srqP-C1Ocamif1exaU5NsZ29zVo4401FVS61X4YiTUqauWHFm326ji00EJY0XpB42qIvyzms_hmvp3FcNzFdxsaxLpT7yf9sVYs7-IiyA5Oudn9Vdp2ajc2f1Aelca0IVseGws2BDfg4Xn0pIHWqRcP-1X0bf5-Wy7Q6tPtsixWCGhKPIKcZpjVWY0TThuo-C7NBDAl0jSktBECC55VLOdVBjmHnWJZgxmvlWIsTUVyFb2ZdPfQypPVHdhBGtByUazkWAsuCiIY-0UCez2xJ2t-9sp52WlXqza4oUzvZI5JzjnhAXz1APZVeOdZ9_8_BABNgHZe_T6fg_0hszzJmdxuvsrVNvl-u_74WSaBfz3xUDt5ML0NZjpJsBznQZ7nIfkHbNqi0A</recordid><startdate>20050623</startdate><enddate>20050623</enddate><creator>Chass, Gregory A</creator><creator>Mirasol, Reinard S</creator><creator>Setiadi, David H</creator><creator>Tang, Ting-Hua</creator><creator>Chin, Wutharath</creator><creator>Mons, Michel</creator><creator>Dimicoli, Iliana</creator><creator>Dognon, Jean-Pierre</creator><creator>Viskolcz, Bela</creator><creator>Lovas, Sándor</creator><creator>Penke, Botond</creator><creator>Csizmadia, Imre G</creator><general>American Chemical Society</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7X8</scope><scope>1XC</scope></search><sort><creationdate>20050623</creationdate><title>Characterization of the Conformational Probability of N-Acetyl-Phenylalanyl-NH2 by RHF, DFT, and MP2 Computation and AIM Analyses, Confirmed by Jet-Cooled Infrared Data</title><author>Chass, Gregory A ; Mirasol, Reinard S ; Setiadi, David H ; Tang, Ting-Hua ; Chin, Wutharath ; Mons, Michel ; Dimicoli, Iliana ; Dognon, Jean-Pierre ; Viskolcz, Bela ; Lovas, Sándor ; Penke, Botond ; Csizmadia, Imre G</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a241t-a72605c6c0382fab8d469a5e9442fa2f990986b578b6a78ade56f058cee554493</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Alanine - analogs & derivatives</topic><topic>Alanine - chemistry</topic><topic>Amides - chemistry</topic><topic>Chemical Sciences</topic><topic>Cold Temperature</topic><topic>Computer Simulation</topic><topic>Electrons</topic><topic>Glycine - analogs & derivatives</topic><topic>Glycine - chemistry</topic><topic>Hydrogen Bonding</topic><topic>Infrared Rays</topic><topic>Models, Molecular</topic><topic>Molecular Conformation</topic><topic>or physical chemistry</topic><topic>Phenylalanine - analogs & derivatives</topic><topic>Phenylalanine - chemistry</topic><topic>Spectrophotometry, Infrared</topic><topic>Theoretical and</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chass, Gregory A</creatorcontrib><creatorcontrib>Mirasol, Reinard S</creatorcontrib><creatorcontrib>Setiadi, David H</creatorcontrib><creatorcontrib>Tang, Ting-Hua</creatorcontrib><creatorcontrib>Chin, Wutharath</creatorcontrib><creatorcontrib>Mons, Michel</creatorcontrib><creatorcontrib>Dimicoli, Iliana</creatorcontrib><creatorcontrib>Dognon, Jean-Pierre</creatorcontrib><creatorcontrib>Viskolcz, Bela</creatorcontrib><creatorcontrib>Lovas, Sándor</creatorcontrib><creatorcontrib>Penke, Botond</creatorcontrib><creatorcontrib>Csizmadia, Imre G</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chass, Gregory A</au><au>Mirasol, Reinard S</au><au>Setiadi, David H</au><au>Tang, Ting-Hua</au><au>Chin, Wutharath</au><au>Mons, Michel</au><au>Dimicoli, Iliana</au><au>Dognon, Jean-Pierre</au><au>Viskolcz, Bela</au><au>Lovas, Sándor</au><au>Penke, Botond</au><au>Csizmadia, Imre G</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization of the Conformational Probability of N-Acetyl-Phenylalanyl-NH2 by RHF, DFT, and MP2 Computation and AIM Analyses, Confirmed by Jet-Cooled Infrared Data</atitle><jtitle>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory</jtitle><addtitle>J. Phys. Chem. A</addtitle><date>2005-06-23</date><risdate>2005</risdate><volume>109</volume><issue>24</issue><spage>5289</spage><epage>5302</epage><pages>5289-5302</pages><issn>1089-5639</issn><eissn>1520-5215</eissn><abstract>Computational and experimental determinations were carried out in parallel on the conformational probability of N-Acetyl-Phenylalanine-NH2 (NAPA). Ab initio computations were completed at the BLYP/6-311G(df,p), B3LYP/6-31G(d), B3LYP/6-31G(d,p), and B3LYP/6-31+G(d) levels of theory, labeled L/61fp, B/6, B/6p, and B/6+, respectively. Three experimentally identified conformers were compared with theoretical data, confirming their identities as the βL anti , γL gauche+ , and γL gauche- (BACKBONESIDECHAIN) conformers. Evidence comes from matching experimental and theoretical data for all three constituent N−H stretches of NAPA, with a ΔExperimental - Theoretical = ∼1−3 cm-1, ∼0−5 cm-1, and ∼1−6 cm-1, at the L/61fp and B/6+ levels, respectively. Corrected-ZPE relative energies were computed to be 0.14, 0.00, 0.26 and 0.00, 0.67, 0.57 (kcal*mol-1) for the βL anti , γ L gauche+ , and γ L gauche- conformers, respectively, at the L/61fp and B/6+ levels, respectively. The MP2/6-31+G(d) level of theory was subsequently found to give similar relative energies. Characterization of the intramolecular interactions responsible for red and blue shifting of the N−H stretches showed the existence of the following intramolecular interactions: CO[i]- - -HN[i], (Ar[i])-Cγ- - -HN[i+1], (Ar[i])-Cδ-H- - -OC[i-1] for βL anti ; CO[i-1]- - -HN[i+1], (Ar[i])-Cγ- - -HN[i+1], (Ar[i])-C−H- - -OC[i] for γL gauche+ ; and C=O[i - 1]- - -HN[i+1] for γL gauche- . Each of these interactions were further investigated and subsequently characterized by orbital population and Atoms-In-Molecules (AIM) analyses, with the identity of overlap and bond critical points (BCP) serving as ‘scoring criteria', respectively. Experimental and theoretical carbonyl stretches were also compared and showed good agreement, adding further strength to the synergy between experiment and theory.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>16839052</pmid><doi>10.1021/jp040720i</doi><tpages>14</tpages></addata></record> |
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subjects | Alanine - analogs & derivatives Alanine - chemistry Amides - chemistry Chemical Sciences Cold Temperature Computer Simulation Electrons Glycine - analogs & derivatives Glycine - chemistry Hydrogen Bonding Infrared Rays Models, Molecular Molecular Conformation or physical chemistry Phenylalanine - analogs & derivatives Phenylalanine - chemistry Spectrophotometry, Infrared Theoretical and |
title | Characterization of the Conformational Probability of N-Acetyl-Phenylalanyl-NH2 by RHF, DFT, and MP2 Computation and AIM Analyses, Confirmed by Jet-Cooled Infrared Data |
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