Characterization of the Conformational Probability of N-Acetyl-Phenylalanyl-NH2 by RHF, DFT, and MP2 Computation and AIM Analyses, Confirmed by Jet-Cooled Infrared Data

Computational and experimental determinations were carried out in parallel on the conformational probability of N-Acetyl-Phenylalanine-NH2 (NAPA). Ab initio computations were completed at the BLYP/6-311G(df,p), B3LYP/6-31G(d), B3LYP/6-31G(d,p), and B3LYP/6-31+G(d) levels of theory, labeled L/61fp, B...

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Veröffentlicht in:The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory Molecules, spectroscopy, kinetics, environment, & general theory, 2005-06, Vol.109 (24), p.5289-5302
Hauptverfasser: Chass, Gregory A, Mirasol, Reinard S, Setiadi, David H, Tang, Ting-Hua, Chin, Wutharath, Mons, Michel, Dimicoli, Iliana, Dognon, Jean-Pierre, Viskolcz, Bela, Lovas, Sándor, Penke, Botond, Csizmadia, Imre G
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container_issue 24
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container_title The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory
container_volume 109
creator Chass, Gregory A
Mirasol, Reinard S
Setiadi, David H
Tang, Ting-Hua
Chin, Wutharath
Mons, Michel
Dimicoli, Iliana
Dognon, Jean-Pierre
Viskolcz, Bela
Lovas, Sándor
Penke, Botond
Csizmadia, Imre G
description Computational and experimental determinations were carried out in parallel on the conformational probability of N-Acetyl-Phenylalanine-NH2 (NAPA). Ab initio computations were completed at the BLYP/6-311G(df,p), B3LYP/6-31G(d), B3LYP/6-31G(d,p), and B3LYP/6-31+G(d) levels of theory, labeled L/61fp, B/6, B/6p, and B/6+, respectively. Three experimentally identified conformers were compared with theoretical data, confirming their identities as the βL anti , γL gauche+ , and γL gauche- (BACKBONESIDECHAIN) conformers. Evidence comes from matching experimental and theoretical data for all three constituent N−H stretches of NAPA, with a ΔExperimental - Theoretical = ∼1−3 cm-1, ∼0−5 cm-1, and ∼1−6 cm-1, at the L/61fp and B/6+ levels, respectively. Corrected-ZPE relative energies were computed to be 0.14, 0.00, 0.26 and 0.00, 0.67, 0.57 (kcal*mol-1) for the βL anti , γ L gauche+ , and γ L gauche- conformers, respectively, at the L/61fp and B/6+ levels, respectively. The MP2/6-31+G(d) level of theory was subsequently found to give similar relative energies. Characterization of the intramolecular interactions responsible for red and blue shifting of the N−H stretches showed the existence of the following intramolecular interactions: CO[i]- - -HN[i], (Ar[i])-Cγ- - -HN[i+1], (Ar[i])-Cδ-H- - -OC[i-1] for βL anti ; CO[i-1]- - -HN[i+1], (Ar[i])-Cγ- - -HN[i+1], (Ar[i])-C−H- - -OC[i] for γL gauche+ ; and C=O[i - 1]- - -HN[i+1] for γL gauche- . Each of these interactions were further investigated and subsequently characterized by orbital population and Atoms-In-Molecules (AIM) analyses, with the identity of overlap and bond critical points (BCP) serving as ‘scoring criteria', respectively. Experimental and theoretical carbonyl stretches were also compared and showed good agreement, adding further strength to the synergy between experiment and theory.
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Ab initio computations were completed at the BLYP/6-311G(df,p), B3LYP/6-31G(d), B3LYP/6-31G(d,p), and B3LYP/6-31+G(d) levels of theory, labeled L/61fp, B/6, B/6p, and B/6+, respectively. Three experimentally identified conformers were compared with theoretical data, confirming their identities as the βL anti , γL gauche+ , and γL gauche- (BACKBONESIDECHAIN) conformers. Evidence comes from matching experimental and theoretical data for all three constituent N−H stretches of NAPA, with a ΔExperimental - Theoretical = ∼1−3 cm-1, ∼0−5 cm-1, and ∼1−6 cm-1, at the L/61fp and B/6+ levels, respectively. Corrected-ZPE relative energies were computed to be 0.14, 0.00, 0.26 and 0.00, 0.67, 0.57 (kcal*mol-1) for the βL anti , γ L gauche+ , and γ L gauche- conformers, respectively, at the L/61fp and B/6+ levels, respectively. The MP2/6-31+G(d) level of theory was subsequently found to give similar relative energies. Characterization of the intramolecular interactions responsible for red and blue shifting of the N−H stretches showed the existence of the following intramolecular interactions: CO[i]- - -HN[i], (Ar[i])-Cγ- - -HN[i+1], (Ar[i])-Cδ-H- - -OC[i-1] for βL anti ; CO[i-1]- - -HN[i+1], (Ar[i])-Cγ- - -HN[i+1], (Ar[i])-C−H- - -OC[i] for γL gauche+ ; and C=O[i - 1]- - -HN[i+1] for γL gauche- . Each of these interactions were further investigated and subsequently characterized by orbital population and Atoms-In-Molecules (AIM) analyses, with the identity of overlap and bond critical points (BCP) serving as ‘scoring criteria', respectively. Experimental and theoretical carbonyl stretches were also compared and showed good agreement, adding further strength to the synergy between experiment and theory.</description><identifier>ISSN: 1089-5639</identifier><identifier>EISSN: 1520-5215</identifier><identifier>DOI: 10.1021/jp040720i</identifier><identifier>PMID: 16839052</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Alanine - analogs &amp; derivatives ; Alanine - chemistry ; Amides - chemistry ; Chemical Sciences ; Cold Temperature ; Computer Simulation ; Electrons ; Glycine - analogs &amp; derivatives ; Glycine - chemistry ; Hydrogen Bonding ; Infrared Rays ; Models, Molecular ; Molecular Conformation ; or physical chemistry ; Phenylalanine - analogs &amp; derivatives ; Phenylalanine - chemistry ; Spectrophotometry, Infrared ; Theoretical and</subject><ispartof>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, &amp; general theory, 2005-06, Vol.109 (24), p.5289-5302</ispartof><rights>Copyright © 2005 American Chemical Society</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/jp040720i$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/jp040720i$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>230,315,782,786,887,27083,27931,27932,56745,56795</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16839052$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.science/hal-00091955$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Chass, Gregory A</creatorcontrib><creatorcontrib>Mirasol, Reinard S</creatorcontrib><creatorcontrib>Setiadi, David H</creatorcontrib><creatorcontrib>Tang, Ting-Hua</creatorcontrib><creatorcontrib>Chin, Wutharath</creatorcontrib><creatorcontrib>Mons, Michel</creatorcontrib><creatorcontrib>Dimicoli, Iliana</creatorcontrib><creatorcontrib>Dognon, Jean-Pierre</creatorcontrib><creatorcontrib>Viskolcz, Bela</creatorcontrib><creatorcontrib>Lovas, Sándor</creatorcontrib><creatorcontrib>Penke, Botond</creatorcontrib><creatorcontrib>Csizmadia, Imre G</creatorcontrib><title>Characterization of the Conformational Probability of N-Acetyl-Phenylalanyl-NH2 by RHF, DFT, and MP2 Computation and AIM Analyses, Confirmed by Jet-Cooled Infrared Data</title><title>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, &amp; general theory</title><addtitle>J. Phys. Chem. A</addtitle><description>Computational and experimental determinations were carried out in parallel on the conformational probability of N-Acetyl-Phenylalanine-NH2 (NAPA). Ab initio computations were completed at the BLYP/6-311G(df,p), B3LYP/6-31G(d), B3LYP/6-31G(d,p), and B3LYP/6-31+G(d) levels of theory, labeled L/61fp, B/6, B/6p, and B/6+, respectively. Three experimentally identified conformers were compared with theoretical data, confirming their identities as the βL anti , γL gauche+ , and γL gauche- (BACKBONESIDECHAIN) conformers. Evidence comes from matching experimental and theoretical data for all three constituent N−H stretches of NAPA, with a ΔExperimental - Theoretical = ∼1−3 cm-1, ∼0−5 cm-1, and ∼1−6 cm-1, at the L/61fp and B/6+ levels, respectively. Corrected-ZPE relative energies were computed to be 0.14, 0.00, 0.26 and 0.00, 0.67, 0.57 (kcal*mol-1) for the βL anti , γ L gauche+ , and γ L gauche- conformers, respectively, at the L/61fp and B/6+ levels, respectively. The MP2/6-31+G(d) level of theory was subsequently found to give similar relative energies. Characterization of the intramolecular interactions responsible for red and blue shifting of the N−H stretches showed the existence of the following intramolecular interactions: CO[i]- - -HN[i], (Ar[i])-Cγ- - -HN[i+1], (Ar[i])-Cδ-H- - -OC[i-1] for βL anti ; CO[i-1]- - -HN[i+1], (Ar[i])-Cγ- - -HN[i+1], (Ar[i])-C−H- - -OC[i] for γL gauche+ ; and C=O[i - 1]- - -HN[i+1] for γL gauche- . Each of these interactions were further investigated and subsequently characterized by orbital population and Atoms-In-Molecules (AIM) analyses, with the identity of overlap and bond critical points (BCP) serving as ‘scoring criteria', respectively. Experimental and theoretical carbonyl stretches were also compared and showed good agreement, adding further strength to the synergy between experiment and theory.</description><subject>Alanine - analogs &amp; derivatives</subject><subject>Alanine - chemistry</subject><subject>Amides - chemistry</subject><subject>Chemical Sciences</subject><subject>Cold Temperature</subject><subject>Computer Simulation</subject><subject>Electrons</subject><subject>Glycine - analogs &amp; derivatives</subject><subject>Glycine - chemistry</subject><subject>Hydrogen Bonding</subject><subject>Infrared Rays</subject><subject>Models, Molecular</subject><subject>Molecular Conformation</subject><subject>or physical chemistry</subject><subject>Phenylalanine - analogs &amp; derivatives</subject><subject>Phenylalanine - chemistry</subject><subject>Spectrophotometry, Infrared</subject><subject>Theoretical and</subject><issn>1089-5639</issn><issn>1520-5215</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9ksGO0zAQhiMEYpeFAy-AcmElpBpsJ07sY5Sl20K3FCgXLtYkdVSXpC62gwhPxGPibJZe7JnxN7_l3xNFLwl-SzAl7w4nnOKcYv0ouiSMYsQoYY9DjLlALEvERfTMuQPGmCQ0fRpdkIwnAjN6Gf0t92Ch9srqP-C1Ocamif1exaU5NsZ29zVo4401FVS61X4YiTUqauWHFm326ji00EJY0XpB42qIvyzms_hmvp3FcNzFdxsaxLpT7yf9sVYs7-IiyA5Oudn9Vdp2ajc2f1Aelca0IVseGws2BDfg4Xn0pIHWqRcP-1X0bf5-Wy7Q6tPtsixWCGhKPIKcZpjVWY0TThuo-C7NBDAl0jSktBECC55VLOdVBjmHnWJZgxmvlWIsTUVyFb2ZdPfQypPVHdhBGtByUazkWAsuCiIY-0UCez2xJ2t-9sp52WlXqza4oUzvZI5JzjnhAXz1APZVeOdZ9_8_BABNgHZe_T6fg_0hszzJmdxuvsrVNvl-u_74WSaBfz3xUDt5ML0NZjpJsBznQZ7nIfkHbNqi0A</recordid><startdate>20050623</startdate><enddate>20050623</enddate><creator>Chass, Gregory A</creator><creator>Mirasol, Reinard S</creator><creator>Setiadi, David H</creator><creator>Tang, Ting-Hua</creator><creator>Chin, Wutharath</creator><creator>Mons, Michel</creator><creator>Dimicoli, Iliana</creator><creator>Dognon, Jean-Pierre</creator><creator>Viskolcz, Bela</creator><creator>Lovas, Sándor</creator><creator>Penke, Botond</creator><creator>Csizmadia, Imre G</creator><general>American Chemical Society</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7X8</scope><scope>1XC</scope></search><sort><creationdate>20050623</creationdate><title>Characterization of the Conformational Probability of N-Acetyl-Phenylalanyl-NH2 by RHF, DFT, and MP2 Computation and AIM Analyses, Confirmed by Jet-Cooled Infrared Data</title><author>Chass, Gregory A ; Mirasol, Reinard S ; Setiadi, David H ; Tang, Ting-Hua ; Chin, Wutharath ; Mons, Michel ; Dimicoli, Iliana ; Dognon, Jean-Pierre ; Viskolcz, Bela ; Lovas, Sándor ; Penke, Botond ; Csizmadia, Imre G</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a241t-a72605c6c0382fab8d469a5e9442fa2f990986b578b6a78ade56f058cee554493</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Alanine - analogs &amp; derivatives</topic><topic>Alanine - chemistry</topic><topic>Amides - chemistry</topic><topic>Chemical Sciences</topic><topic>Cold Temperature</topic><topic>Computer Simulation</topic><topic>Electrons</topic><topic>Glycine - analogs &amp; derivatives</topic><topic>Glycine - chemistry</topic><topic>Hydrogen Bonding</topic><topic>Infrared Rays</topic><topic>Models, Molecular</topic><topic>Molecular Conformation</topic><topic>or physical chemistry</topic><topic>Phenylalanine - analogs &amp; derivatives</topic><topic>Phenylalanine - chemistry</topic><topic>Spectrophotometry, Infrared</topic><topic>Theoretical and</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chass, Gregory A</creatorcontrib><creatorcontrib>Mirasol, Reinard S</creatorcontrib><creatorcontrib>Setiadi, David H</creatorcontrib><creatorcontrib>Tang, Ting-Hua</creatorcontrib><creatorcontrib>Chin, Wutharath</creatorcontrib><creatorcontrib>Mons, Michel</creatorcontrib><creatorcontrib>Dimicoli, Iliana</creatorcontrib><creatorcontrib>Dognon, Jean-Pierre</creatorcontrib><creatorcontrib>Viskolcz, Bela</creatorcontrib><creatorcontrib>Lovas, Sándor</creatorcontrib><creatorcontrib>Penke, Botond</creatorcontrib><creatorcontrib>Csizmadia, Imre G</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>The journal of physical chemistry. 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A</addtitle><date>2005-06-23</date><risdate>2005</risdate><volume>109</volume><issue>24</issue><spage>5289</spage><epage>5302</epage><pages>5289-5302</pages><issn>1089-5639</issn><eissn>1520-5215</eissn><abstract>Computational and experimental determinations were carried out in parallel on the conformational probability of N-Acetyl-Phenylalanine-NH2 (NAPA). Ab initio computations were completed at the BLYP/6-311G(df,p), B3LYP/6-31G(d), B3LYP/6-31G(d,p), and B3LYP/6-31+G(d) levels of theory, labeled L/61fp, B/6, B/6p, and B/6+, respectively. Three experimentally identified conformers were compared with theoretical data, confirming their identities as the βL anti , γL gauche+ , and γL gauche- (BACKBONESIDECHAIN) conformers. Evidence comes from matching experimental and theoretical data for all three constituent N−H stretches of NAPA, with a ΔExperimental - Theoretical = ∼1−3 cm-1, ∼0−5 cm-1, and ∼1−6 cm-1, at the L/61fp and B/6+ levels, respectively. Corrected-ZPE relative energies were computed to be 0.14, 0.00, 0.26 and 0.00, 0.67, 0.57 (kcal*mol-1) for the βL anti , γ L gauche+ , and γ L gauche- conformers, respectively, at the L/61fp and B/6+ levels, respectively. The MP2/6-31+G(d) level of theory was subsequently found to give similar relative energies. Characterization of the intramolecular interactions responsible for red and blue shifting of the N−H stretches showed the existence of the following intramolecular interactions: CO[i]- - -HN[i], (Ar[i])-Cγ- - -HN[i+1], (Ar[i])-Cδ-H- - -OC[i-1] for βL anti ; CO[i-1]- - -HN[i+1], (Ar[i])-Cγ- - -HN[i+1], (Ar[i])-C−H- - -OC[i] for γL gauche+ ; and C=O[i - 1]- - -HN[i+1] for γL gauche- . Each of these interactions were further investigated and subsequently characterized by orbital population and Atoms-In-Molecules (AIM) analyses, with the identity of overlap and bond critical points (BCP) serving as ‘scoring criteria', respectively. Experimental and theoretical carbonyl stretches were also compared and showed good agreement, adding further strength to the synergy between experiment and theory.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>16839052</pmid><doi>10.1021/jp040720i</doi><tpages>14</tpages></addata></record>
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ispartof The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory, 2005-06, Vol.109 (24), p.5289-5302
issn 1089-5639
1520-5215
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recordid cdi_hal_primary_oai_HAL_hal_00091955v1
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subjects Alanine - analogs & derivatives
Alanine - chemistry
Amides - chemistry
Chemical Sciences
Cold Temperature
Computer Simulation
Electrons
Glycine - analogs & derivatives
Glycine - chemistry
Hydrogen Bonding
Infrared Rays
Models, Molecular
Molecular Conformation
or physical chemistry
Phenylalanine - analogs & derivatives
Phenylalanine - chemistry
Spectrophotometry, Infrared
Theoretical and
title Characterization of the Conformational Probability of N-Acetyl-Phenylalanyl-NH2 by RHF, DFT, and MP2 Computation and AIM Analyses, Confirmed by Jet-Cooled Infrared Data
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