Genetic diversity of GRSPaV-associated virus in Algeria
Grapevine rupestris stem pitting-associated virus (GRSPaV; Foveavirus rupestris, Betaflexiviridae) is the most widespread grapevine virus in most viticulture regions, and this virus has high genetic variability. Genetic diversity of GRSPaV in Algeria was examined, based on the complete capsid protei...
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| Veröffentlicht in: | Phytopathologia mediterranea 2024-12, Vol.63 (3), p.443-451 |
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| container_title | Phytopathologia mediterranea |
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| creator | BACHIR, Adel EL AIR, Manel ALISAWI, Osamah DJENAOUI, Anfel LAIDOUDI, Nourelhouda MAHDID, Imane YAHIAOUI, Bilal LOUANCHI, Meriem MAHFOUDHI, Naima LEHAD, Arezki |
| description | Grapevine rupestris stem pitting-associated virus (GRSPaV; Foveavirus rupestris, Betaflexiviridae) is the most widespread grapevine virus in most viticulture regions, and this virus has high genetic variability. Genetic diversity of GRSPaV in Algeria was examined, based on the complete capsid protein (CP) gene. Similarity proportions between the CP sequences varied from 76% to 99%. The complete coding sequence of Algerian GRSPaV isolate ALG99 (8,646 nt) was determined using high-throughput sequencing and bioinformatic analyses. Algerian GRSPaV isolates clustered into four groups, with most sequences in groups III and IV. This research is the first to determine the genetic variability of GRSPaV in Algeria. |
| doi_str_mv | 10.36253/phyto-15554 |
| format | Article |
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Genetic diversity of GRSPaV in Algeria was examined, based on the complete capsid protein (CP) gene. Similarity proportions between the CP sequences varied from 76% to 99%. The complete coding sequence of Algerian GRSPaV isolate ALG99 (8,646 nt) was determined using high-throughput sequencing and bioinformatic analyses. Algerian GRSPaV isolates clustered into four groups, with most sequences in groups III and IV. 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Genetic diversity of GRSPaV in Algeria was examined, based on the complete capsid protein (CP) gene. Similarity proportions between the CP sequences varied from 76% to 99%. The complete coding sequence of Algerian GRSPaV isolate ALG99 (8,646 nt) was determined using high-throughput sequencing and bioinformatic analyses. Algerian GRSPaV isolates clustered into four groups, with most sequences in groups III and IV. 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| source | EZB-FREE-00999 freely available EZB journals |
| subjects | Biological diversity Diseases and pests Distribution Genetic aspects Grapes Identification and classification Plant viruses RNA viruses Virus diseases of plants Virus research |
| title | Genetic diversity of GRSPaV-associated virus in Algeria |
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