Loss in the Antibacterial Ability of a PyrR Gene Regulating Pyrimidine Biosynthesis after Using CRISPR/Cas9-Mediated Knockout for Metabolic Engineering in ILactobacillus casei/I
Lactobacillus casei (L. casei) has four possible mechanisms: antimicrobial antagonism, competitional adhesion, immunoregulation, and the inhibition of bacterial toxins. To delineate the metabolic reactions of nucleotides from L. casei that are associated with mechanisms of inhibiting pathogens and i...
Gespeichert in:
Veröffentlicht in: | Microorganisms (Basel) 2023-09, Vol.11 (10) |
---|---|
Hauptverfasser: | , , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | |
---|---|
container_issue | 10 |
container_start_page | |
container_title | Microorganisms (Basel) |
container_volume | 11 |
creator | Chen, Shaojun He, Xinmiao Qin, Ziliang Li, Gang Wang, Wentao Nai, Zida Tian, Yaguang Liu, Di Jiang, Xinpeng |
description | Lactobacillus casei (L. casei) has four possible mechanisms: antimicrobial antagonism, competitional adhesion, immunoregulation, and the inhibition of bacterial toxins. To delineate the metabolic reactions of nucleotides from L. casei that are associated with mechanisms of inhibiting pathogens and immunoregulation, we report that a PyrR-deficient L. casei strain was constructed using the CRISPR-Cas9[sup.D10A] tool. Furthermore, there were some changes in its basic biological characterization, such as its growth curve, auxotroph, and morphological damage. The metabolic profiles of the supernatant between the PyrR-deficient and wild strains revealed the regulation of the synthesis of genetic material and of certain targeting pathways and metabolites. In addition, the characteristics of the PyrR-deficient strain were significantly altered as it lost the ability to inhibit the growth of pathogens. Moreover, we identified PyrR-regulating pyrimidine biosynthesis, which further improved its internalization and colocalization with macrophages. Evidence shows that the PyrR gene is a key active component in L. casei supernatants for the regulation of pyrimidine biosynthesis against a wide range of pathogens. |
doi_str_mv | 10.3390/microorganisms11102371 |
format | Article |
fullrecord | <record><control><sourceid>gale</sourceid><recordid>TN_cdi_gale_infotracmisc_A772099435</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A772099435</galeid><sourcerecordid>A772099435</sourcerecordid><originalsourceid>FETCH-LOGICAL-g675-a9b7ca6cd47df7de6e40025b31d9024f3a18debf312b1725f83254ad93ac1cc93</originalsourceid><addsrcrecordid>eNptUctKA0EQXERB0fyCDHheM4_dncwxBh_BBEOMZ-mdx9q6mYGdySGf5R86QQ852H3opqiqLuiiuGb0VghFx1vUQwhDBx7jNjLGKBeSnRQXnMqm5A2Vp0f7eTGK8ZPmUkxManZRfC9CjAQ9SR-WTH3CFnSyA0JPpi32mPYkOAJktR_W5NF6S9a22_WQ0HcHELdoMKN3GOLeZ5OIkYDLFuQtHjiz9fx1tR7PIKpyaQ1CsoY8-6C_wi4RFwaytAna0KMm977LXvl61uVI80XOEnIg7PtdJBqixfH8qjhz0Ec7-puXxebhfjN7Khcvj_PZdFF2jaxLUK3U0GhTSeOksY2tKOV1K5hRlFdOAJsY2zrBeMskr91E8LoCowRoprUSl8XNr20HvX1H70IaQG8x6veplJwqVYk6s27_YeU2Nn8meOsw40eCHzSKh-w</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Loss in the Antibacterial Ability of a PyrR Gene Regulating Pyrimidine Biosynthesis after Using CRISPR/Cas9-Mediated Knockout for Metabolic Engineering in ILactobacillus casei/I</title><source>MDPI - Multidisciplinary Digital Publishing Institute</source><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><source>PubMed Central Open Access</source><creator>Chen, Shaojun ; He, Xinmiao ; Qin, Ziliang ; Li, Gang ; Wang, Wentao ; Nai, Zida ; Tian, Yaguang ; Liu, Di ; Jiang, Xinpeng</creator><creatorcontrib>Chen, Shaojun ; He, Xinmiao ; Qin, Ziliang ; Li, Gang ; Wang, Wentao ; Nai, Zida ; Tian, Yaguang ; Liu, Di ; Jiang, Xinpeng</creatorcontrib><description>Lactobacillus casei (L. casei) has four possible mechanisms: antimicrobial antagonism, competitional adhesion, immunoregulation, and the inhibition of bacterial toxins. To delineate the metabolic reactions of nucleotides from L. casei that are associated with mechanisms of inhibiting pathogens and immunoregulation, we report that a PyrR-deficient L. casei strain was constructed using the CRISPR-Cas9[sup.D10A] tool. Furthermore, there were some changes in its basic biological characterization, such as its growth curve, auxotroph, and morphological damage. The metabolic profiles of the supernatant between the PyrR-deficient and wild strains revealed the regulation of the synthesis of genetic material and of certain targeting pathways and metabolites. In addition, the characteristics of the PyrR-deficient strain were significantly altered as it lost the ability to inhibit the growth of pathogens. Moreover, we identified PyrR-regulating pyrimidine biosynthesis, which further improved its internalization and colocalization with macrophages. Evidence shows that the PyrR gene is a key active component in L. casei supernatants for the regulation of pyrimidine biosynthesis against a wide range of pathogens.</description><identifier>ISSN: 2076-2607</identifier><identifier>EISSN: 2076-2607</identifier><identifier>DOI: 10.3390/microorganisms11102371</identifier><language>eng</language><publisher>MDPI AG</publisher><subject>Antibacterial agents ; Genetic aspects ; Genetic regulation ; Lactobacillus ; Metabolic engineering ; Methods ; Microbiological research ; Microbiological synthesis ; Physiological aspects ; Production processes ; Pyrimidines</subject><ispartof>Microorganisms (Basel), 2023-09, Vol.11 (10)</ispartof><rights>COPYRIGHT 2023 MDPI AG</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,860,27901,27902</link.rule.ids></links><search><creatorcontrib>Chen, Shaojun</creatorcontrib><creatorcontrib>He, Xinmiao</creatorcontrib><creatorcontrib>Qin, Ziliang</creatorcontrib><creatorcontrib>Li, Gang</creatorcontrib><creatorcontrib>Wang, Wentao</creatorcontrib><creatorcontrib>Nai, Zida</creatorcontrib><creatorcontrib>Tian, Yaguang</creatorcontrib><creatorcontrib>Liu, Di</creatorcontrib><creatorcontrib>Jiang, Xinpeng</creatorcontrib><title>Loss in the Antibacterial Ability of a PyrR Gene Regulating Pyrimidine Biosynthesis after Using CRISPR/Cas9-Mediated Knockout for Metabolic Engineering in ILactobacillus casei/I</title><title>Microorganisms (Basel)</title><description>Lactobacillus casei (L. casei) has four possible mechanisms: antimicrobial antagonism, competitional adhesion, immunoregulation, and the inhibition of bacterial toxins. To delineate the metabolic reactions of nucleotides from L. casei that are associated with mechanisms of inhibiting pathogens and immunoregulation, we report that a PyrR-deficient L. casei strain was constructed using the CRISPR-Cas9[sup.D10A] tool. Furthermore, there were some changes in its basic biological characterization, such as its growth curve, auxotroph, and morphological damage. The metabolic profiles of the supernatant between the PyrR-deficient and wild strains revealed the regulation of the synthesis of genetic material and of certain targeting pathways and metabolites. In addition, the characteristics of the PyrR-deficient strain were significantly altered as it lost the ability to inhibit the growth of pathogens. Moreover, we identified PyrR-regulating pyrimidine biosynthesis, which further improved its internalization and colocalization with macrophages. Evidence shows that the PyrR gene is a key active component in L. casei supernatants for the regulation of pyrimidine biosynthesis against a wide range of pathogens.</description><subject>Antibacterial agents</subject><subject>Genetic aspects</subject><subject>Genetic regulation</subject><subject>Lactobacillus</subject><subject>Metabolic engineering</subject><subject>Methods</subject><subject>Microbiological research</subject><subject>Microbiological synthesis</subject><subject>Physiological aspects</subject><subject>Production processes</subject><subject>Pyrimidines</subject><issn>2076-2607</issn><issn>2076-2607</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid/><recordid>eNptUctKA0EQXERB0fyCDHheM4_dncwxBh_BBEOMZ-mdx9q6mYGdySGf5R86QQ852H3opqiqLuiiuGb0VghFx1vUQwhDBx7jNjLGKBeSnRQXnMqm5A2Vp0f7eTGK8ZPmUkxManZRfC9CjAQ9SR-WTH3CFnSyA0JPpi32mPYkOAJktR_W5NF6S9a22_WQ0HcHELdoMKN3GOLeZ5OIkYDLFuQtHjiz9fx1tR7PIKpyaQ1CsoY8-6C_wi4RFwaytAna0KMm977LXvl61uVI80XOEnIg7PtdJBqixfH8qjhz0Ec7-puXxebhfjN7Khcvj_PZdFF2jaxLUK3U0GhTSeOksY2tKOV1K5hRlFdOAJsY2zrBeMskr91E8LoCowRoprUSl8XNr20HvX1H70IaQG8x6veplJwqVYk6s27_YeU2Nn8meOsw40eCHzSKh-w</recordid><startdate>20230901</startdate><enddate>20230901</enddate><creator>Chen, Shaojun</creator><creator>He, Xinmiao</creator><creator>Qin, Ziliang</creator><creator>Li, Gang</creator><creator>Wang, Wentao</creator><creator>Nai, Zida</creator><creator>Tian, Yaguang</creator><creator>Liu, Di</creator><creator>Jiang, Xinpeng</creator><general>MDPI AG</general><scope/></search><sort><creationdate>20230901</creationdate><title>Loss in the Antibacterial Ability of a PyrR Gene Regulating Pyrimidine Biosynthesis after Using CRISPR/Cas9-Mediated Knockout for Metabolic Engineering in ILactobacillus casei/I</title><author>Chen, Shaojun ; He, Xinmiao ; Qin, Ziliang ; Li, Gang ; Wang, Wentao ; Nai, Zida ; Tian, Yaguang ; Liu, Di ; Jiang, Xinpeng</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-g675-a9b7ca6cd47df7de6e40025b31d9024f3a18debf312b1725f83254ad93ac1cc93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Antibacterial agents</topic><topic>Genetic aspects</topic><topic>Genetic regulation</topic><topic>Lactobacillus</topic><topic>Metabolic engineering</topic><topic>Methods</topic><topic>Microbiological research</topic><topic>Microbiological synthesis</topic><topic>Physiological aspects</topic><topic>Production processes</topic><topic>Pyrimidines</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chen, Shaojun</creatorcontrib><creatorcontrib>He, Xinmiao</creatorcontrib><creatorcontrib>Qin, Ziliang</creatorcontrib><creatorcontrib>Li, Gang</creatorcontrib><creatorcontrib>Wang, Wentao</creatorcontrib><creatorcontrib>Nai, Zida</creatorcontrib><creatorcontrib>Tian, Yaguang</creatorcontrib><creatorcontrib>Liu, Di</creatorcontrib><creatorcontrib>Jiang, Xinpeng</creatorcontrib><jtitle>Microorganisms (Basel)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chen, Shaojun</au><au>He, Xinmiao</au><au>Qin, Ziliang</au><au>Li, Gang</au><au>Wang, Wentao</au><au>Nai, Zida</au><au>Tian, Yaguang</au><au>Liu, Di</au><au>Jiang, Xinpeng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Loss in the Antibacterial Ability of a PyrR Gene Regulating Pyrimidine Biosynthesis after Using CRISPR/Cas9-Mediated Knockout for Metabolic Engineering in ILactobacillus casei/I</atitle><jtitle>Microorganisms (Basel)</jtitle><date>2023-09-01</date><risdate>2023</risdate><volume>11</volume><issue>10</issue><issn>2076-2607</issn><eissn>2076-2607</eissn><abstract>Lactobacillus casei (L. casei) has four possible mechanisms: antimicrobial antagonism, competitional adhesion, immunoregulation, and the inhibition of bacterial toxins. To delineate the metabolic reactions of nucleotides from L. casei that are associated with mechanisms of inhibiting pathogens and immunoregulation, we report that a PyrR-deficient L. casei strain was constructed using the CRISPR-Cas9[sup.D10A] tool. Furthermore, there were some changes in its basic biological characterization, such as its growth curve, auxotroph, and morphological damage. The metabolic profiles of the supernatant between the PyrR-deficient and wild strains revealed the regulation of the synthesis of genetic material and of certain targeting pathways and metabolites. In addition, the characteristics of the PyrR-deficient strain were significantly altered as it lost the ability to inhibit the growth of pathogens. Moreover, we identified PyrR-regulating pyrimidine biosynthesis, which further improved its internalization and colocalization with macrophages. Evidence shows that the PyrR gene is a key active component in L. casei supernatants for the regulation of pyrimidine biosynthesis against a wide range of pathogens.</abstract><pub>MDPI AG</pub><doi>10.3390/microorganisms11102371</doi></addata></record> |
fulltext | fulltext |
identifier | ISSN: 2076-2607 |
ispartof | Microorganisms (Basel), 2023-09, Vol.11 (10) |
issn | 2076-2607 2076-2607 |
language | eng |
recordid | cdi_gale_infotracmisc_A772099435 |
source | MDPI - Multidisciplinary Digital Publishing Institute; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; PubMed Central Open Access |
subjects | Antibacterial agents Genetic aspects Genetic regulation Lactobacillus Metabolic engineering Methods Microbiological research Microbiological synthesis Physiological aspects Production processes Pyrimidines |
title | Loss in the Antibacterial Ability of a PyrR Gene Regulating Pyrimidine Biosynthesis after Using CRISPR/Cas9-Mediated Knockout for Metabolic Engineering in ILactobacillus casei/I |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-10T22%3A13%3A15IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Loss%20in%20the%20Antibacterial%20Ability%20of%20a%20PyrR%20Gene%20Regulating%20Pyrimidine%20Biosynthesis%20after%20Using%20CRISPR/Cas9-Mediated%20Knockout%20for%20Metabolic%20Engineering%20in%20ILactobacillus%20casei/I&rft.jtitle=Microorganisms%20(Basel)&rft.au=Chen,%20Shaojun&rft.date=2023-09-01&rft.volume=11&rft.issue=10&rft.issn=2076-2607&rft.eissn=2076-2607&rft_id=info:doi/10.3390/microorganisms11102371&rft_dat=%3Cgale%3EA772099435%3C/gale%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rft_galeid=A772099435&rfr_iscdi=true |