Computational and theoretical chemistry of newly synthesized and characterized 2,2'-bis-N-acetamides
Energetic heterocycles, including pyridines, triazoles, and tetrazoles, exhibit greater density, heats of formation, and oxygen balance compared to their carbocyclic counterparts, making them a promising approach for synthesizing novel bis-tetrazole acetamides. Synthesized compounds A-F, some of whi...
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creator | Ejaz, Syeda Abida Farid, Aftab Zargar, Seema Channar, Pervaiz Ali Aziz, Mubashir Wani, Tanveer A Attaullah, Hafiz Muhammad Ujhan, Rabail Tehzeeb, Arfa Saeed, Aamer Ali, Hafiz Saqib Erben, Mauricio F |
description | Energetic heterocycles, including pyridines, triazoles, and tetrazoles, exhibit greater density, heats of formation, and oxygen balance compared to their carbocyclic counterparts, making them a promising approach for synthesizing novel bis-tetrazole acetamides. Synthesized compounds A-F, some of which feature a chlorine atom attached to the phenyl ring, serve as valuable synthons for aryl coupling reactions. Analysis via .sup.1H-NMR and .sup.13C-NMR spectroscopy, as well as density functional considerations through B3LYP functional correlation with 6-311 + + G(d) and 6-31G(d) basis set, revealed the observed LUMO/HOMO energies and charge transfer within the molecule. Additionally, the dipole moment, chemical hardness, softness, ionization potential, local reactivity potential via Fukui indices and thermodynamic properties (entropy, enthalpy, and Gibbs free energy) of the molecule were calculated through density functional theory studies. In addition, Molecular Docking studies were conducted to investigate the anti-cancer potential of synthesized heterocyclic compounds against caspase 3, NF-KAPPA-B and P53 protein. Molecular docking analysis demonstrated a potent interaction between 2,2'-(5,5'-(1,4-phenylene)bis(1H-tetrazole-5,1-diyl))bis-N-(2,4-dinitrophenyl) acetamides (6d) and TP53 and NF-KAPPA-B with binding energies of - 11.8 kJ/mol and - 10.9 kJ/mol for TP53 and NF-KAPPA-B, respectively. Similarly, 2,2'-(5,5'-(1,4-phenylene)bis(1H-tetrazole-5,1-diyl))bis-N-(2-chlorophenyl) acetamides (6f) exhibited a strong interaction with caspase-3 with binding energy of -10.0 kJ/mol, indicating their potential as therapeutic agents against these proteins. Furthermore, the findings of current study was further strengthen by 100 ns molecular dynamics (MD) simulations. Finally, theoretical studies of oxygen balance and nitrogen percentage suggest that these molecules can be utilized as energetic materials. |
doi_str_mv | 10.1186/s13065-023-01011-3 |
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Synthesized compounds A-F, some of which feature a chlorine atom attached to the phenyl ring, serve as valuable synthons for aryl coupling reactions. Analysis via .sup.1H-NMR and .sup.13C-NMR spectroscopy, as well as density functional considerations through B3LYP functional correlation with 6-311 + + G(d) and 6-31G(d) basis set, revealed the observed LUMO/HOMO energies and charge transfer within the molecule. Additionally, the dipole moment, chemical hardness, softness, ionization potential, local reactivity potential via Fukui indices and thermodynamic properties (entropy, enthalpy, and Gibbs free energy) of the molecule were calculated through density functional theory studies. In addition, Molecular Docking studies were conducted to investigate the anti-cancer potential of synthesized heterocyclic compounds against caspase 3, NF-KAPPA-B and P53 protein. Molecular docking analysis demonstrated a potent interaction between 2,2'-(5,5'-(1,4-phenylene)bis(1H-tetrazole-5,1-diyl))bis-N-(2,4-dinitrophenyl) acetamides (6d) and TP53 and NF-KAPPA-B with binding energies of - 11.8 kJ/mol and - 10.9 kJ/mol for TP53 and NF-KAPPA-B, respectively. Similarly, 2,2'-(5,5'-(1,4-phenylene)bis(1H-tetrazole-5,1-diyl))bis-N-(2-chlorophenyl) acetamides (6f) exhibited a strong interaction with caspase-3 with binding energy of -10.0 kJ/mol, indicating their potential as therapeutic agents against these proteins. Furthermore, the findings of current study was further strengthen by 100 ns molecular dynamics (MD) simulations. Finally, theoretical studies of oxygen balance and nitrogen percentage suggest that these molecules can be utilized as energetic materials.</description><identifier>ISSN: 2661-801X</identifier><identifier>EISSN: 2661-801X</identifier><identifier>DOI: 10.1186/s13065-023-01011-3</identifier><language>eng</language><publisher>BioMed Central Ltd</publisher><subject>Comparative analysis ; Density functionals ; Force and energy ; Ionization ; Mechanical properties ; Molecular dynamics ; Nuclear magnetic resonance spectroscopy ; Pyridine ; Thermodynamics ; Tumor proteins</subject><ispartof>BMC chemistry, 2023-08, Vol.17 (1)</ispartof><rights>COPYRIGHT 2023 BioMed Central Ltd.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,864,27924,27925</link.rule.ids></links><search><creatorcontrib>Ejaz, Syeda Abida</creatorcontrib><creatorcontrib>Farid, Aftab</creatorcontrib><creatorcontrib>Zargar, Seema</creatorcontrib><creatorcontrib>Channar, Pervaiz Ali</creatorcontrib><creatorcontrib>Aziz, Mubashir</creatorcontrib><creatorcontrib>Wani, Tanveer A</creatorcontrib><creatorcontrib>Attaullah, Hafiz Muhammad</creatorcontrib><creatorcontrib>Ujhan, Rabail</creatorcontrib><creatorcontrib>Tehzeeb, Arfa</creatorcontrib><creatorcontrib>Saeed, Aamer</creatorcontrib><creatorcontrib>Ali, Hafiz Saqib</creatorcontrib><creatorcontrib>Erben, Mauricio F</creatorcontrib><title>Computational and theoretical chemistry of newly synthesized and characterized 2,2'-bis-N-acetamides</title><title>BMC chemistry</title><description>Energetic heterocycles, including pyridines, triazoles, and tetrazoles, exhibit greater density, heats of formation, and oxygen balance compared to their carbocyclic counterparts, making them a promising approach for synthesizing novel bis-tetrazole acetamides. Synthesized compounds A-F, some of which feature a chlorine atom attached to the phenyl ring, serve as valuable synthons for aryl coupling reactions. Analysis via .sup.1H-NMR and .sup.13C-NMR spectroscopy, as well as density functional considerations through B3LYP functional correlation with 6-311 + + G(d) and 6-31G(d) basis set, revealed the observed LUMO/HOMO energies and charge transfer within the molecule. Additionally, the dipole moment, chemical hardness, softness, ionization potential, local reactivity potential via Fukui indices and thermodynamic properties (entropy, enthalpy, and Gibbs free energy) of the molecule were calculated through density functional theory studies. In addition, Molecular Docking studies were conducted to investigate the anti-cancer potential of synthesized heterocyclic compounds against caspase 3, NF-KAPPA-B and P53 protein. Molecular docking analysis demonstrated a potent interaction between 2,2'-(5,5'-(1,4-phenylene)bis(1H-tetrazole-5,1-diyl))bis-N-(2,4-dinitrophenyl) acetamides (6d) and TP53 and NF-KAPPA-B with binding energies of - 11.8 kJ/mol and - 10.9 kJ/mol for TP53 and NF-KAPPA-B, respectively. Similarly, 2,2'-(5,5'-(1,4-phenylene)bis(1H-tetrazole-5,1-diyl))bis-N-(2-chlorophenyl) acetamides (6f) exhibited a strong interaction with caspase-3 with binding energy of -10.0 kJ/mol, indicating their potential as therapeutic agents against these proteins. Furthermore, the findings of current study was further strengthen by 100 ns molecular dynamics (MD) simulations. Finally, theoretical studies of oxygen balance and nitrogen percentage suggest that these molecules can be utilized as energetic materials.</description><subject>Comparative analysis</subject><subject>Density functionals</subject><subject>Force and energy</subject><subject>Ionization</subject><subject>Mechanical properties</subject><subject>Molecular dynamics</subject><subject>Nuclear magnetic resonance spectroscopy</subject><subject>Pyridine</subject><subject>Thermodynamics</subject><subject>Tumor proteins</subject><issn>2661-801X</issn><issn>2661-801X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><recordid>eNptj0tLAzEQx4MoWLRfwNOCBxFMzWM3mz2W4qNQFHyAtzKbTNrIdlc2KVo_vaF6aEHmMA9-_5n5E3LG2Yhzra4Dl0wVlAlJGWecU3lABkIpTjXjb4c79TEZhvDOGBO8YKXMB8ROutXHOkL0XQtNBq3N4hK7HqM3qTdLXPkQ-03WuazFz2aThU2biOC_0W5xs4QeTMR-OxFX4oLWPtAHCgYjrLzFcEqOHDQBh3_5hLze3rxM7uns8W46Gc_oIr2tqQXpVCm00cDA8Rx5XdnCmFzXVSkUClmiq4UGVYhc61zWlXHGODA5ihpyeULOf_cuoMG5b10X02vJgJmPS8UqUaQziRr9Q6WwyavpWnQ-zfcEl3uCxET8igtYhzCfPj_tsj9V5net</recordid><startdate>20230814</startdate><enddate>20230814</enddate><creator>Ejaz, Syeda Abida</creator><creator>Farid, Aftab</creator><creator>Zargar, Seema</creator><creator>Channar, Pervaiz Ali</creator><creator>Aziz, Mubashir</creator><creator>Wani, Tanveer A</creator><creator>Attaullah, Hafiz Muhammad</creator><creator>Ujhan, Rabail</creator><creator>Tehzeeb, Arfa</creator><creator>Saeed, Aamer</creator><creator>Ali, Hafiz Saqib</creator><creator>Erben, Mauricio F</creator><general>BioMed Central Ltd</general><scope>ISR</scope></search><sort><creationdate>20230814</creationdate><title>Computational and theoretical chemistry of newly synthesized and characterized 2,2'-bis-N-acetamides</title><author>Ejaz, Syeda Abida ; Farid, Aftab ; Zargar, Seema ; Channar, Pervaiz Ali ; Aziz, Mubashir ; Wani, Tanveer A ; Attaullah, Hafiz Muhammad ; Ujhan, Rabail ; Tehzeeb, Arfa ; Saeed, Aamer ; Ali, Hafiz Saqib ; Erben, Mauricio F</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-g1018-da3f6728c8a0af14e1b9d5cc48b9726e237efb28a65248843b9cfccfac4e2ba43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Comparative analysis</topic><topic>Density functionals</topic><topic>Force and energy</topic><topic>Ionization</topic><topic>Mechanical properties</topic><topic>Molecular dynamics</topic><topic>Nuclear magnetic resonance spectroscopy</topic><topic>Pyridine</topic><topic>Thermodynamics</topic><topic>Tumor proteins</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ejaz, Syeda Abida</creatorcontrib><creatorcontrib>Farid, Aftab</creatorcontrib><creatorcontrib>Zargar, Seema</creatorcontrib><creatorcontrib>Channar, Pervaiz Ali</creatorcontrib><creatorcontrib>Aziz, Mubashir</creatorcontrib><creatorcontrib>Wani, Tanveer A</creatorcontrib><creatorcontrib>Attaullah, Hafiz Muhammad</creatorcontrib><creatorcontrib>Ujhan, Rabail</creatorcontrib><creatorcontrib>Tehzeeb, Arfa</creatorcontrib><creatorcontrib>Saeed, Aamer</creatorcontrib><creatorcontrib>Ali, Hafiz Saqib</creatorcontrib><creatorcontrib>Erben, Mauricio F</creatorcontrib><collection>Gale In Context: Science</collection><jtitle>BMC chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ejaz, Syeda Abida</au><au>Farid, Aftab</au><au>Zargar, Seema</au><au>Channar, Pervaiz Ali</au><au>Aziz, Mubashir</au><au>Wani, Tanveer A</au><au>Attaullah, Hafiz Muhammad</au><au>Ujhan, Rabail</au><au>Tehzeeb, Arfa</au><au>Saeed, Aamer</au><au>Ali, Hafiz Saqib</au><au>Erben, Mauricio F</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Computational and theoretical chemistry of newly synthesized and characterized 2,2'-bis-N-acetamides</atitle><jtitle>BMC chemistry</jtitle><date>2023-08-14</date><risdate>2023</risdate><volume>17</volume><issue>1</issue><issn>2661-801X</issn><eissn>2661-801X</eissn><abstract>Energetic heterocycles, including pyridines, triazoles, and tetrazoles, exhibit greater density, heats of formation, and oxygen balance compared to their carbocyclic counterparts, making them a promising approach for synthesizing novel bis-tetrazole acetamides. Synthesized compounds A-F, some of which feature a chlorine atom attached to the phenyl ring, serve as valuable synthons for aryl coupling reactions. Analysis via .sup.1H-NMR and .sup.13C-NMR spectroscopy, as well as density functional considerations through B3LYP functional correlation with 6-311 + + G(d) and 6-31G(d) basis set, revealed the observed LUMO/HOMO energies and charge transfer within the molecule. Additionally, the dipole moment, chemical hardness, softness, ionization potential, local reactivity potential via Fukui indices and thermodynamic properties (entropy, enthalpy, and Gibbs free energy) of the molecule were calculated through density functional theory studies. In addition, Molecular Docking studies were conducted to investigate the anti-cancer potential of synthesized heterocyclic compounds against caspase 3, NF-KAPPA-B and P53 protein. Molecular docking analysis demonstrated a potent interaction between 2,2'-(5,5'-(1,4-phenylene)bis(1H-tetrazole-5,1-diyl))bis-N-(2,4-dinitrophenyl) acetamides (6d) and TP53 and NF-KAPPA-B with binding energies of - 11.8 kJ/mol and - 10.9 kJ/mol for TP53 and NF-KAPPA-B, respectively. Similarly, 2,2'-(5,5'-(1,4-phenylene)bis(1H-tetrazole-5,1-diyl))bis-N-(2-chlorophenyl) acetamides (6f) exhibited a strong interaction with caspase-3 with binding energy of -10.0 kJ/mol, indicating their potential as therapeutic agents against these proteins. Furthermore, the findings of current study was further strengthen by 100 ns molecular dynamics (MD) simulations. Finally, theoretical studies of oxygen balance and nitrogen percentage suggest that these molecules can be utilized as energetic materials.</abstract><pub>BioMed Central Ltd</pub><doi>10.1186/s13065-023-01011-3</doi></addata></record> |
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subjects | Comparative analysis Density functionals Force and energy Ionization Mechanical properties Molecular dynamics Nuclear magnetic resonance spectroscopy Pyridine Thermodynamics Tumor proteins |
title | Computational and theoretical chemistry of newly synthesized and characterized 2,2'-bis-N-acetamides |
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