Expanding the Toolbox for Functional Genomics in IFonsecaea pedrosoi/I: The Use of Split-Marker and Biolistic Transformation for Inactivation of Tryptophan Synthase Gene
Chromoblastomycosis (CBM) is a disease caused by several dematiaceous fungi from different genera, and Fonsecaea is the most common which has been clinically isolated. Genetic transformation methods have recently been described; however, molecular tools for the functional study of genes have been sc...
Gespeichert in:
Veröffentlicht in: | Journal of fungi (Basel) 2023-02, Vol.9 (2) |
---|---|
Hauptverfasser: | , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | |
---|---|
container_issue | 2 |
container_start_page | |
container_title | Journal of fungi (Basel) |
container_volume | 9 |
creator | Favilla, Luísa Dan Herman, Tatiana Sobianski Goersch, Camila da Silva de Andrade, Rosangela Vieira Felipe, Maria Sueli Soares Bocca, Anamélia Lorenzetti Fernandes, Larissa |
description | Chromoblastomycosis (CBM) is a disease caused by several dematiaceous fungi from different genera, and Fonsecaea is the most common which has been clinically isolated. Genetic transformation methods have recently been described; however, molecular tools for the functional study of genes have been scarcely reported for those fungi. In this work, we demonstrated that gene deletion and generation of the null mutant by homologous recombination are achievable for Fonsecaea pedrosoi by the use of two approaches: use of double-joint PCR for cassette construction, followed by delivery of the split-marker by biolistic transformation. Through in silico analyses, we identified that F. pedrosoi presents the complete enzymatic apparatus required for tryptophan (trp) biosynthesis. The gene encoding a tryptophan synthase trpB -which converts chorismate to trp-was disrupted. The ΔtrpB auxotrophic mutant can grow with external trp supply, but germination, viability of conidia, and radial growth are defective compared to the wild-type and reconstituted strains. The use of 5-FAA for selection of trp[sup.-] phenotypes and for counter-selection of strains carrying the trp gene was also demonstrated. The molecular tools for the functional study of genes, allied to the genetic information from genomic databases, significantly boost our understanding of the biology and pathogenicity of CBM causative agents. |
doi_str_mv | 10.3390/jof9020224 |
format | Article |
fullrecord | <record><control><sourceid>gale</sourceid><recordid>TN_cdi_gale_infotracmisc_A752115519</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A752115519</galeid><sourcerecordid>A752115519</sourcerecordid><originalsourceid>FETCH-LOGICAL-g679-ef22fed485411dccdc94f08c5bc3705222670fd0027f0979c3c0037aa1b8da713</originalsourceid><addsrcrecordid>eNptkM1OAjEUhSdGE4my8QmauB64bWfo1B0SwEkwLhgTd6T0B4pDO5mOBh7Jt7SKCxbmLu7NyTnfSW6S3GEYUMphuPOGAwFCsoukRyjwdATF2-XZfZ30Q9gBAM6LEee0l3xND41wyroN6rYaVd7Xa39Axrdo9uFkZ70TNZpr5_dWBmQdKmfeBS2FFqjRqvXB22H5gKqYfg0aeYOWTW279Fm077pFEY4era9t6KxEVStciPC9-CH_1pROxJrPkxDTVXtsOt9shUPLo-u2IkJjv75Nroyog-7_7Zukmk2ryVO6eJmXk_Ei3YwYT7UhxGiVFXmGsZJSSZ4ZKGS-lpRBTggZMTAKgDADnHFJJQBlQuB1oQTD9Ca5P2E3otYr64zvWiH3NsjVmOUE4zzHPLoG_7jiKB3_5J02NupngW_Ky4Dq</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Expanding the Toolbox for Functional Genomics in IFonsecaea pedrosoi/I: The Use of Split-Marker and Biolistic Transformation for Inactivation of Tryptophan Synthase Gene</title><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central Open Access</source><source>MDPI - Multidisciplinary Digital Publishing Institute</source><source>PubMed Central</source><creator>Favilla, Luísa Dan ; Herman, Tatiana Sobianski ; Goersch, Camila da Silva ; de Andrade, Rosangela Vieira ; Felipe, Maria Sueli Soares ; Bocca, Anamélia Lorenzetti ; Fernandes, Larissa</creator><creatorcontrib>Favilla, Luísa Dan ; Herman, Tatiana Sobianski ; Goersch, Camila da Silva ; de Andrade, Rosangela Vieira ; Felipe, Maria Sueli Soares ; Bocca, Anamélia Lorenzetti ; Fernandes, Larissa</creatorcontrib><description>Chromoblastomycosis (CBM) is a disease caused by several dematiaceous fungi from different genera, and Fonsecaea is the most common which has been clinically isolated. Genetic transformation methods have recently been described; however, molecular tools for the functional study of genes have been scarcely reported for those fungi. In this work, we demonstrated that gene deletion and generation of the null mutant by homologous recombination are achievable for Fonsecaea pedrosoi by the use of two approaches: use of double-joint PCR for cassette construction, followed by delivery of the split-marker by biolistic transformation. Through in silico analyses, we identified that F. pedrosoi presents the complete enzymatic apparatus required for tryptophan (trp) biosynthesis. The gene encoding a tryptophan synthase trpB -which converts chorismate to trp-was disrupted. The ΔtrpB auxotrophic mutant can grow with external trp supply, but germination, viability of conidia, and radial growth are defective compared to the wild-type and reconstituted strains. The use of 5-FAA for selection of trp[sup.-] phenotypes and for counter-selection of strains carrying the trp gene was also demonstrated. The molecular tools for the functional study of genes, allied to the genetic information from genomic databases, significantly boost our understanding of the biology and pathogenicity of CBM causative agents.</description><identifier>ISSN: 2309-608X</identifier><identifier>EISSN: 2309-608X</identifier><identifier>DOI: 10.3390/jof9020224</identifier><language>eng</language><publisher>MDPI AG</publisher><subject>Mycoses ; Tryptophan</subject><ispartof>Journal of fungi (Basel), 2023-02, Vol.9 (2)</ispartof><rights>COPYRIGHT 2023 MDPI AG</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>315,781,785,865,27929,27930</link.rule.ids></links><search><creatorcontrib>Favilla, Luísa Dan</creatorcontrib><creatorcontrib>Herman, Tatiana Sobianski</creatorcontrib><creatorcontrib>Goersch, Camila da Silva</creatorcontrib><creatorcontrib>de Andrade, Rosangela Vieira</creatorcontrib><creatorcontrib>Felipe, Maria Sueli Soares</creatorcontrib><creatorcontrib>Bocca, Anamélia Lorenzetti</creatorcontrib><creatorcontrib>Fernandes, Larissa</creatorcontrib><title>Expanding the Toolbox for Functional Genomics in IFonsecaea pedrosoi/I: The Use of Split-Marker and Biolistic Transformation for Inactivation of Tryptophan Synthase Gene</title><title>Journal of fungi (Basel)</title><description>Chromoblastomycosis (CBM) is a disease caused by several dematiaceous fungi from different genera, and Fonsecaea is the most common which has been clinically isolated. Genetic transformation methods have recently been described; however, molecular tools for the functional study of genes have been scarcely reported for those fungi. In this work, we demonstrated that gene deletion and generation of the null mutant by homologous recombination are achievable for Fonsecaea pedrosoi by the use of two approaches: use of double-joint PCR for cassette construction, followed by delivery of the split-marker by biolistic transformation. Through in silico analyses, we identified that F. pedrosoi presents the complete enzymatic apparatus required for tryptophan (trp) biosynthesis. The gene encoding a tryptophan synthase trpB -which converts chorismate to trp-was disrupted. The ΔtrpB auxotrophic mutant can grow with external trp supply, but germination, viability of conidia, and radial growth are defective compared to the wild-type and reconstituted strains. The use of 5-FAA for selection of trp[sup.-] phenotypes and for counter-selection of strains carrying the trp gene was also demonstrated. The molecular tools for the functional study of genes, allied to the genetic information from genomic databases, significantly boost our understanding of the biology and pathogenicity of CBM causative agents.</description><subject>Mycoses</subject><subject>Tryptophan</subject><issn>2309-608X</issn><issn>2309-608X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid/><recordid>eNptkM1OAjEUhSdGE4my8QmauB64bWfo1B0SwEkwLhgTd6T0B4pDO5mOBh7Jt7SKCxbmLu7NyTnfSW6S3GEYUMphuPOGAwFCsoukRyjwdATF2-XZfZ30Q9gBAM6LEee0l3xND41wyroN6rYaVd7Xa39Axrdo9uFkZ70TNZpr5_dWBmQdKmfeBS2FFqjRqvXB22H5gKqYfg0aeYOWTW279Fm077pFEY4era9t6KxEVStciPC9-CH_1pROxJrPkxDTVXtsOt9shUPLo-u2IkJjv75Nroyog-7_7Zukmk2ryVO6eJmXk_Ei3YwYT7UhxGiVFXmGsZJSSZ4ZKGS-lpRBTggZMTAKgDADnHFJJQBlQuB1oQTD9Ca5P2E3otYr64zvWiH3NsjVmOUE4zzHPLoG_7jiKB3_5J02NupngW_Ky4Dq</recordid><startdate>20230201</startdate><enddate>20230201</enddate><creator>Favilla, Luísa Dan</creator><creator>Herman, Tatiana Sobianski</creator><creator>Goersch, Camila da Silva</creator><creator>de Andrade, Rosangela Vieira</creator><creator>Felipe, Maria Sueli Soares</creator><creator>Bocca, Anamélia Lorenzetti</creator><creator>Fernandes, Larissa</creator><general>MDPI AG</general><scope/></search><sort><creationdate>20230201</creationdate><title>Expanding the Toolbox for Functional Genomics in IFonsecaea pedrosoi/I: The Use of Split-Marker and Biolistic Transformation for Inactivation of Tryptophan Synthase Gene</title><author>Favilla, Luísa Dan ; Herman, Tatiana Sobianski ; Goersch, Camila da Silva ; de Andrade, Rosangela Vieira ; Felipe, Maria Sueli Soares ; Bocca, Anamélia Lorenzetti ; Fernandes, Larissa</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-g679-ef22fed485411dccdc94f08c5bc3705222670fd0027f0979c3c0037aa1b8da713</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Mycoses</topic><topic>Tryptophan</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Favilla, Luísa Dan</creatorcontrib><creatorcontrib>Herman, Tatiana Sobianski</creatorcontrib><creatorcontrib>Goersch, Camila da Silva</creatorcontrib><creatorcontrib>de Andrade, Rosangela Vieira</creatorcontrib><creatorcontrib>Felipe, Maria Sueli Soares</creatorcontrib><creatorcontrib>Bocca, Anamélia Lorenzetti</creatorcontrib><creatorcontrib>Fernandes, Larissa</creatorcontrib><jtitle>Journal of fungi (Basel)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Favilla, Luísa Dan</au><au>Herman, Tatiana Sobianski</au><au>Goersch, Camila da Silva</au><au>de Andrade, Rosangela Vieira</au><au>Felipe, Maria Sueli Soares</au><au>Bocca, Anamélia Lorenzetti</au><au>Fernandes, Larissa</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Expanding the Toolbox for Functional Genomics in IFonsecaea pedrosoi/I: The Use of Split-Marker and Biolistic Transformation for Inactivation of Tryptophan Synthase Gene</atitle><jtitle>Journal of fungi (Basel)</jtitle><date>2023-02-01</date><risdate>2023</risdate><volume>9</volume><issue>2</issue><issn>2309-608X</issn><eissn>2309-608X</eissn><abstract>Chromoblastomycosis (CBM) is a disease caused by several dematiaceous fungi from different genera, and Fonsecaea is the most common which has been clinically isolated. Genetic transformation methods have recently been described; however, molecular tools for the functional study of genes have been scarcely reported for those fungi. In this work, we demonstrated that gene deletion and generation of the null mutant by homologous recombination are achievable for Fonsecaea pedrosoi by the use of two approaches: use of double-joint PCR for cassette construction, followed by delivery of the split-marker by biolistic transformation. Through in silico analyses, we identified that F. pedrosoi presents the complete enzymatic apparatus required for tryptophan (trp) biosynthesis. The gene encoding a tryptophan synthase trpB -which converts chorismate to trp-was disrupted. The ΔtrpB auxotrophic mutant can grow with external trp supply, but germination, viability of conidia, and radial growth are defective compared to the wild-type and reconstituted strains. The use of 5-FAA for selection of trp[sup.-] phenotypes and for counter-selection of strains carrying the trp gene was also demonstrated. The molecular tools for the functional study of genes, allied to the genetic information from genomic databases, significantly boost our understanding of the biology and pathogenicity of CBM causative agents.</abstract><pub>MDPI AG</pub><doi>10.3390/jof9020224</doi></addata></record> |
fulltext | fulltext |
identifier | ISSN: 2309-608X |
ispartof | Journal of fungi (Basel), 2023-02, Vol.9 (2) |
issn | 2309-608X 2309-608X |
language | eng |
recordid | cdi_gale_infotracmisc_A752115519 |
source | DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central Open Access; MDPI - Multidisciplinary Digital Publishing Institute; PubMed Central |
subjects | Mycoses Tryptophan |
title | Expanding the Toolbox for Functional Genomics in IFonsecaea pedrosoi/I: The Use of Split-Marker and Biolistic Transformation for Inactivation of Tryptophan Synthase Gene |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-12T08%3A26%3A58IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Expanding%20the%20Toolbox%20for%20Functional%20Genomics%20in%20IFonsecaea%20pedrosoi/I:%20The%20Use%20of%20Split-Marker%20and%20Biolistic%20Transformation%20for%20Inactivation%20of%20Tryptophan%20Synthase%20Gene&rft.jtitle=Journal%20of%20fungi%20(Basel)&rft.au=Favilla,%20Lu%C3%ADsa%20Dan&rft.date=2023-02-01&rft.volume=9&rft.issue=2&rft.issn=2309-608X&rft.eissn=2309-608X&rft_id=info:doi/10.3390/jof9020224&rft_dat=%3Cgale%3EA752115519%3C/gale%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rft_galeid=A752115519&rfr_iscdi=true |