Assessment of branch point prediction tools to predict physiological branch points and their alteration by variants

Branch points (BPs) map within short motifs upstream of acceptor splice sites (3'ss) and are essential for splicing of pre-mature mRNA. Several BP-dedicated bioinformatics tools, including HSF, SVM-BPfinder, BPP, Branchpointer, LaBranchoR and RNABPS were developed during the last decade. Here,...

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Veröffentlicht in:	BMC genomics 2020-01, Vol.21 (1), p.86-86, Article 86
Hauptverfasser:	Leman, Raphaël, Tubeuf, Hélène, Raad, Sabine, Tournier, Isabelle, Derambure, Céline, Lanos, Raphaël, Gaildrat, Pascaline, Castelain, Gaia, Hauchard, Julie, Killian, Audrey, Baert-Desurmont, Stéphanie, Legros, Angelina, Goardon, Nicolas, Quesnelle, Céline, Ricou, Agathe, Castera, Laurent, Vaur, Dominique, Le Gac, Gérald, Ka, Chandran, Fichou, Yann, Bonnet-Dorion, Françoise, Sevenet, Nicolas, Guillaud-Bataille, Marine, Boutry-Kryza, Nadia, Schultz, Inès, Caux-Moncoutier, Virginie, Rossing, Maria, Walker, Logan C, Spurdle, Amanda B, Houdayer, Claude, Martins, Alexandra, Krieger, Sophie
Format:	Artikel
Sprache:	eng
Schlagworte:	Accuracy Adenosine Algorithms Benchmark Benchmarking Bioinformatics Branch point Computational biology Datasets Diseases Evaluation Genes Genomics HSF Life Sciences Messenger RNA Methods mRNA Open source software Physiology Prediction RNA RNA sequencing RNA splicing Scientific software Splicing SVM-BPfinder
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