Genome-Wide Identification and Functional Characterization of IFAR1-RELATED SEQUENCE/I

FAR1-RELATED SEQUENCE (FRS) transcription factors are generated by transposases and play vital roles in plant growth and development, light signaling transduction, phytohormone response, and stress resistance. FRSs have been described in various plant species. However, FRS family members and their f...

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Veröffentlicht in:Plants (Basel) 2023-07, Vol.12 (13)
Hauptverfasser: Chen, Qingshuai, Song, Yang, Liu, Kui, Su, Chen, Yu, Ru, Li, Ying, Yang, Yi, Zhou, Bailing, Wang, Jihua, Hu, Guodong
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container_issue 13
container_start_page
container_title Plants (Basel)
container_volume 12
creator Chen, Qingshuai
Song, Yang
Liu, Kui
Su, Chen
Yu, Ru
Li, Ying
Yang, Yi
Zhou, Bailing
Wang, Jihua
Hu, Guodong
description FAR1-RELATED SEQUENCE (FRS) transcription factors are generated by transposases and play vital roles in plant growth and development, light signaling transduction, phytohormone response, and stress resistance. FRSs have been described in various plant species. However, FRS family members and their functions remain poorly understood in vegetative crops such as potato (Solanum tuberosum, St). In the present study, 20 putative StFRS proteins were identified in potato via genome-wide analysis. They were non-randomly localized to eight chromosomes and phylogenetic analysis classified them into six subgroups along with FRS proteins from Arabidopsis and tomato. Conserved protein motif, protein domain, and gene structure analyses supported the evolutionary relationships among the FRS proteins. Analysis of the cis-acting elements in the promoters and the expression profiles of StFRSs in various plant tissues and under different stress treatments revealed the spatiotemporal expression patterns and the potential roles of StFRSs in phytohormonal and stress responses. StFRSs were differentially expressed in the cultivar “Xisen 6”, which is exposed to a variety of stresses. Hence, these genes may be critical in regulating abiotic stress. Elucidating the StFRS functions will lay theoretical and empirical foundations for the molecular breeding of potato varieties with high light use efficiency and stress resistance.
doi_str_mv 10.3390/plants12132575
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FRSs have been described in various plant species. However, FRS family members and their functions remain poorly understood in vegetative crops such as potato (Solanum tuberosum, St). In the present study, 20 putative StFRS proteins were identified in potato via genome-wide analysis. They were non-randomly localized to eight chromosomes and phylogenetic analysis classified them into six subgroups along with FRS proteins from Arabidopsis and tomato. Conserved protein motif, protein domain, and gene structure analyses supported the evolutionary relationships among the FRS proteins. Analysis of the cis-acting elements in the promoters and the expression profiles of StFRSs in various plant tissues and under different stress treatments revealed the spatiotemporal expression patterns and the potential roles of StFRSs in phytohormonal and stress responses. StFRSs were differentially expressed in the cultivar “Xisen 6”, which is exposed to a variety of stresses. 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subjects Arabidopsis thaliana
Botanical research
Cellular signal transduction
DNA binding proteins
Genes
Genetic aspects
Genomes
Genomics
Identification and classification
Phylogeny
Physiological aspects
Plant genetics
Potatoes
title Genome-Wide Identification and Functional Characterization of IFAR1-RELATED SEQUENCE/I
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