Genome-Wide Identification and Functional Characterization of IFAR1-RELATED SEQUENCE/I
FAR1-RELATED SEQUENCE (FRS) transcription factors are generated by transposases and play vital roles in plant growth and development, light signaling transduction, phytohormone response, and stress resistance. FRSs have been described in various plant species. However, FRS family members and their f...
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Veröffentlicht in: | Plants (Basel) 2023-07, Vol.12 (13) |
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creator | Chen, Qingshuai Song, Yang Liu, Kui Su, Chen Yu, Ru Li, Ying Yang, Yi Zhou, Bailing Wang, Jihua Hu, Guodong |
description | FAR1-RELATED SEQUENCE (FRS) transcription factors are generated by transposases and play vital roles in plant growth and development, light signaling transduction, phytohormone response, and stress resistance. FRSs have been described in various plant species. However, FRS family members and their functions remain poorly understood in vegetative crops such as potato (Solanum tuberosum, St). In the present study, 20 putative StFRS proteins were identified in potato via genome-wide analysis. They were non-randomly localized to eight chromosomes and phylogenetic analysis classified them into six subgroups along with FRS proteins from Arabidopsis and tomato. Conserved protein motif, protein domain, and gene structure analyses supported the evolutionary relationships among the FRS proteins. Analysis of the cis-acting elements in the promoters and the expression profiles of StFRSs in various plant tissues and under different stress treatments revealed the spatiotemporal expression patterns and the potential roles of StFRSs in phytohormonal and stress responses. StFRSs were differentially expressed in the cultivar “Xisen 6”, which is exposed to a variety of stresses. Hence, these genes may be critical in regulating abiotic stress. Elucidating the StFRS functions will lay theoretical and empirical foundations for the molecular breeding of potato varieties with high light use efficiency and stress resistance. |
doi_str_mv | 10.3390/plants12132575 |
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FRSs have been described in various plant species. However, FRS family members and their functions remain poorly understood in vegetative crops such as potato (Solanum tuberosum, St). In the present study, 20 putative StFRS proteins were identified in potato via genome-wide analysis. They were non-randomly localized to eight chromosomes and phylogenetic analysis classified them into six subgroups along with FRS proteins from Arabidopsis and tomato. Conserved protein motif, protein domain, and gene structure analyses supported the evolutionary relationships among the FRS proteins. Analysis of the cis-acting elements in the promoters and the expression profiles of StFRSs in various plant tissues and under different stress treatments revealed the spatiotemporal expression patterns and the potential roles of StFRSs in phytohormonal and stress responses. StFRSs were differentially expressed in the cultivar “Xisen 6”, which is exposed to a variety of stresses. Hence, these genes may be critical in regulating abiotic stress. Elucidating the StFRS functions will lay theoretical and empirical foundations for the molecular breeding of potato varieties with high light use efficiency and stress resistance.</description><identifier>ISSN: 2223-7747</identifier><identifier>EISSN: 2223-7747</identifier><identifier>DOI: 10.3390/plants12132575</identifier><language>eng</language><publisher>MDPI AG</publisher><subject>Arabidopsis thaliana ; Botanical research ; Cellular signal transduction ; DNA binding proteins ; Genes ; Genetic aspects ; Genomes ; Genomics ; Identification and classification ; Phylogeny ; Physiological aspects ; Plant genetics ; Potatoes</subject><ispartof>Plants (Basel), 2023-07, Vol.12 (13)</ispartof><rights>COPYRIGHT 2023 MDPI AG</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,860,27901,27902</link.rule.ids></links><search><creatorcontrib>Chen, Qingshuai</creatorcontrib><creatorcontrib>Song, Yang</creatorcontrib><creatorcontrib>Liu, Kui</creatorcontrib><creatorcontrib>Su, Chen</creatorcontrib><creatorcontrib>Yu, Ru</creatorcontrib><creatorcontrib>Li, Ying</creatorcontrib><creatorcontrib>Yang, Yi</creatorcontrib><creatorcontrib>Zhou, Bailing</creatorcontrib><creatorcontrib>Wang, Jihua</creatorcontrib><creatorcontrib>Hu, Guodong</creatorcontrib><title>Genome-Wide Identification and Functional Characterization of IFAR1-RELATED SEQUENCE/I</title><title>Plants (Basel)</title><description>FAR1-RELATED SEQUENCE (FRS) transcription factors are generated by transposases and play vital roles in plant growth and development, light signaling transduction, phytohormone response, and stress resistance. FRSs have been described in various plant species. However, FRS family members and their functions remain poorly understood in vegetative crops such as potato (Solanum tuberosum, St). In the present study, 20 putative StFRS proteins were identified in potato via genome-wide analysis. They were non-randomly localized to eight chromosomes and phylogenetic analysis classified them into six subgroups along with FRS proteins from Arabidopsis and tomato. Conserved protein motif, protein domain, and gene structure analyses supported the evolutionary relationships among the FRS proteins. Analysis of the cis-acting elements in the promoters and the expression profiles of StFRSs in various plant tissues and under different stress treatments revealed the spatiotemporal expression patterns and the potential roles of StFRSs in phytohormonal and stress responses. StFRSs were differentially expressed in the cultivar “Xisen 6”, which is exposed to a variety of stresses. Hence, these genes may be critical in regulating abiotic stress. Elucidating the StFRS functions will lay theoretical and empirical foundations for the molecular breeding of potato varieties with high light use efficiency and stress resistance.</description><subject>Arabidopsis thaliana</subject><subject>Botanical research</subject><subject>Cellular signal transduction</subject><subject>DNA binding proteins</subject><subject>Genes</subject><subject>Genetic aspects</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Identification and classification</subject><subject>Phylogeny</subject><subject>Physiological aspects</subject><subject>Plant genetics</subject><subject>Potatoes</subject><issn>2223-7747</issn><issn>2223-7747</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><recordid>eNpVT01PwzAMjRBITGNXzr1y6NYkTZMeq9KNShOIbcBxyoczgroUrZmE-PUEjcOwLfnjvWfZCN3ibEppmc0-O-nDgAmmhHF2gUaEEJpynvPLs_oaTYbhI4smYuBihF4X4Ps9pG_OQNIa8MFZp2VwvU-kN8n86PVvI7ukfpcHqQMc3PcJ723SzqsVTlfNsto098m6eX5pHutm1t6gKyu7ASZ_eYw282ZTP6TLp0VbV8t0x2meamJwqRQThTE8Z4TY-EuhlMgKTQoupIWyZKWhmSpAaEwUM9JwLQmjKgOgYzQ9rd3JDrbO2z7EE6Mb2Dvde7AuzivORC4wLvMouPsniJwAX2Enj8Owbderc-4PYM5kFg</recordid><startdate>20230701</startdate><enddate>20230701</enddate><creator>Chen, Qingshuai</creator><creator>Song, Yang</creator><creator>Liu, Kui</creator><creator>Su, Chen</creator><creator>Yu, Ru</creator><creator>Li, Ying</creator><creator>Yang, Yi</creator><creator>Zhou, Bailing</creator><creator>Wang, Jihua</creator><creator>Hu, Guodong</creator><general>MDPI AG</general><scope>ISR</scope></search><sort><creationdate>20230701</creationdate><title>Genome-Wide Identification and Functional Characterization of IFAR1-RELATED SEQUENCE/I</title><author>Chen, Qingshuai ; Song, Yang ; Liu, Kui ; Su, Chen ; Yu, Ru ; Li, Ying ; Yang, Yi ; Zhou, Bailing ; Wang, Jihua ; Hu, Guodong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-g734-c2d19bb586dd74522f3396bb806c2678afe9959d30b6e8c12b5dad7ca253b0ee3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Arabidopsis thaliana</topic><topic>Botanical research</topic><topic>Cellular signal transduction</topic><topic>DNA binding proteins</topic><topic>Genes</topic><topic>Genetic aspects</topic><topic>Genomes</topic><topic>Genomics</topic><topic>Identification and classification</topic><topic>Phylogeny</topic><topic>Physiological aspects</topic><topic>Plant genetics</topic><topic>Potatoes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chen, Qingshuai</creatorcontrib><creatorcontrib>Song, Yang</creatorcontrib><creatorcontrib>Liu, Kui</creatorcontrib><creatorcontrib>Su, Chen</creatorcontrib><creatorcontrib>Yu, Ru</creatorcontrib><creatorcontrib>Li, Ying</creatorcontrib><creatorcontrib>Yang, Yi</creatorcontrib><creatorcontrib>Zhou, Bailing</creatorcontrib><creatorcontrib>Wang, Jihua</creatorcontrib><creatorcontrib>Hu, Guodong</creatorcontrib><collection>Gale In Context: Science</collection><jtitle>Plants (Basel)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chen, Qingshuai</au><au>Song, Yang</au><au>Liu, Kui</au><au>Su, Chen</au><au>Yu, Ru</au><au>Li, Ying</au><au>Yang, Yi</au><au>Zhou, Bailing</au><au>Wang, Jihua</au><au>Hu, Guodong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-Wide Identification and Functional Characterization of IFAR1-RELATED SEQUENCE/I</atitle><jtitle>Plants (Basel)</jtitle><date>2023-07-01</date><risdate>2023</risdate><volume>12</volume><issue>13</issue><issn>2223-7747</issn><eissn>2223-7747</eissn><abstract>FAR1-RELATED SEQUENCE (FRS) transcription factors are generated by transposases and play vital roles in plant growth and development, light signaling transduction, phytohormone response, and stress resistance. FRSs have been described in various plant species. However, FRS family members and their functions remain poorly understood in vegetative crops such as potato (Solanum tuberosum, St). In the present study, 20 putative StFRS proteins were identified in potato via genome-wide analysis. They were non-randomly localized to eight chromosomes and phylogenetic analysis classified them into six subgroups along with FRS proteins from Arabidopsis and tomato. Conserved protein motif, protein domain, and gene structure analyses supported the evolutionary relationships among the FRS proteins. Analysis of the cis-acting elements in the promoters and the expression profiles of StFRSs in various plant tissues and under different stress treatments revealed the spatiotemporal expression patterns and the potential roles of StFRSs in phytohormonal and stress responses. StFRSs were differentially expressed in the cultivar “Xisen 6”, which is exposed to a variety of stresses. Hence, these genes may be critical in regulating abiotic stress. Elucidating the StFRS functions will lay theoretical and empirical foundations for the molecular breeding of potato varieties with high light use efficiency and stress resistance.</abstract><pub>MDPI AG</pub><doi>10.3390/plants12132575</doi></addata></record> |
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subjects | Arabidopsis thaliana Botanical research Cellular signal transduction DNA binding proteins Genes Genetic aspects Genomes Genomics Identification and classification Phylogeny Physiological aspects Plant genetics Potatoes |
title | Genome-Wide Identification and Functional Characterization of IFAR1-RELATED SEQUENCE/I |
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