Shift of DNRA bacterial community composition in sediment cores of the Pearl River Estuary and the impact of environmental factors
Dissimilatory nitrate reduction to ammonia (DNRA) process, competing with denitrification and anaerobic ammonia oxidation (anammox) for nitrate, is an important nitrogen retention pathway in the environment. Previous studies on DNRA bacterial diversity and composition focused on the surface sediment...
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creator | Hu, Yaohao Hong, Yiguo Ye, Jiaqi Wu, Jiapeng Wang, Yu Ye, Fei Chang, Xiangyang Long, Aimin |
description | Dissimilatory nitrate reduction to ammonia (DNRA) process, competing with denitrification and anaerobic ammonia oxidation (anammox) for nitrate, is an important nitrogen retention pathway in the environment. Previous studies on DNRA bacterial diversity and composition focused on the surface sediments in estuaries, but studies on the deep sediments are limited, and the linkage between DNRA community structure and complex estuarine environment remains unclear. In this study, through high-throughput sequencing of
nrfA
gene followed by high-resolution sample inference, we examined spatially and temporally the composition and diversity of DNRA bacteria along a salinity gradient in five sediment cores of the Pearl River Estuary (PRE). We found a higher diversity and richness of DNRA bacteria in sediments with lower organic carbon, where sea water intersects fresh water. Moreover, the DNRA bacterial communities had the specific spatially distribution coupling with their metabolic difference along the salinity gradient of the Pearl River Estuary, but no obvious difference along the sediment depth. The distribution of DNRA bacteria in the PRE was largely driven by various environmental factors, including salinity, Oxidation-Reduction Potential (ORP), ammonium, nitrate and C
org
/NO
3
−
. Furthermore, dominant DNRA bacteria were found to be the key populations of DNRA communities in the PRE sediments by network analysis. Collectively, our results showed that niche difference of DNRA bacteria indeed occurs in the Pearl River Estuary. |
doi_str_mv | 10.1007/s10646-020-02321-1 |
format | Article |
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nrfA
gene followed by high-resolution sample inference, we examined spatially and temporally the composition and diversity of DNRA bacteria along a salinity gradient in five sediment cores of the Pearl River Estuary (PRE). We found a higher diversity and richness of DNRA bacteria in sediments with lower organic carbon, where sea water intersects fresh water. Moreover, the DNRA bacterial communities had the specific spatially distribution coupling with their metabolic difference along the salinity gradient of the Pearl River Estuary, but no obvious difference along the sediment depth. The distribution of DNRA bacteria in the PRE was largely driven by various environmental factors, including salinity, Oxidation-Reduction Potential (ORP), ammonium, nitrate and C
org
/NO
3
−
. Furthermore, dominant DNRA bacteria were found to be the key populations of DNRA communities in the PRE sediments by network analysis. Collectively, our results showed that niche difference of DNRA bacteria indeed occurs in the Pearl River Estuary.</description><identifier>ISSN: 0963-9292</identifier><identifier>EISSN: 1573-3017</identifier><identifier>DOI: 10.1007/s10646-020-02321-1</identifier><identifier>PMID: 33411163</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Ammonia ; Ammonia-oxidizing bacteria ; Ammonium ; Ammonium compounds ; Ammonium nitrogen ; Anaerobic processes ; Analysis ; Bacteria ; Brackishwater environment ; Chemical analysis ; Community composition ; Community structure ; Composition ; Cores ; Denitrification ; Distribution ; Earth and Environmental Science ; Ecology ; Ecotoxicology ; Environment ; Environmental factors ; Environmental impact ; Environmental Management ; Estuaries ; Estuarine dynamics ; Estuarine environments ; Fresh water ; Freshwater ; Gene sequencing ; Inland water environment ; Network analysis ; Next-generation sequencing ; Nitrate reduction ; Nitrates ; Organic carbon ; Oxidation ; Oxidation-reduction potential ; Redox potential ; Rivers ; Salinity ; Salinity effects ; Salinity gradients ; Seawater ; Sediment ; Sediments ; Sediments (Geology) ; Water analysis ; Water depth</subject><ispartof>Ecotoxicology (London), 2021-10, Vol.30 (8), p.1689-1703</ispartof><rights>Springer Science+Business Media, LLC, part of Springer Nature 2021. corrected publication 2021</rights><rights>COPYRIGHT 2021 Springer</rights><rights>Springer Science+Business Media, LLC, part of Springer Nature 2021. corrected publication 2021.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c414t-c21d5acf379046c7bf294de1e6996d6613ce3cde9cbba89ec6d54dc1ed64ebc3</citedby><cites>FETCH-LOGICAL-c414t-c21d5acf379046c7bf294de1e6996d6613ce3cde9cbba89ec6d54dc1ed64ebc3</cites><orcidid>0000-0002-6255-4100</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10646-020-02321-1$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10646-020-02321-1$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33411163$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Hu, Yaohao</creatorcontrib><creatorcontrib>Hong, Yiguo</creatorcontrib><creatorcontrib>Ye, Jiaqi</creatorcontrib><creatorcontrib>Wu, Jiapeng</creatorcontrib><creatorcontrib>Wang, Yu</creatorcontrib><creatorcontrib>Ye, Fei</creatorcontrib><creatorcontrib>Chang, Xiangyang</creatorcontrib><creatorcontrib>Long, Aimin</creatorcontrib><title>Shift of DNRA bacterial community composition in sediment cores of the Pearl River Estuary and the impact of environmental factors</title><title>Ecotoxicology (London)</title><addtitle>Ecotoxicology</addtitle><addtitle>Ecotoxicology</addtitle><description>Dissimilatory nitrate reduction to ammonia (DNRA) process, competing with denitrification and anaerobic ammonia oxidation (anammox) for nitrate, is an important nitrogen retention pathway in the environment. Previous studies on DNRA bacterial diversity and composition focused on the surface sediments in estuaries, but studies on the deep sediments are limited, and the linkage between DNRA community structure and complex estuarine environment remains unclear. In this study, through high-throughput sequencing of
nrfA
gene followed by high-resolution sample inference, we examined spatially and temporally the composition and diversity of DNRA bacteria along a salinity gradient in five sediment cores of the Pearl River Estuary (PRE). We found a higher diversity and richness of DNRA bacteria in sediments with lower organic carbon, where sea water intersects fresh water. Moreover, the DNRA bacterial communities had the specific spatially distribution coupling with their metabolic difference along the salinity gradient of the Pearl River Estuary, but no obvious difference along the sediment depth. The distribution of DNRA bacteria in the PRE was largely driven by various environmental factors, including salinity, Oxidation-Reduction Potential (ORP), ammonium, nitrate and C
org
/NO
3
−
. Furthermore, dominant DNRA bacteria were found to be the key populations of DNRA communities in the PRE sediments by network analysis. Collectively, our results showed that niche difference of DNRA bacteria indeed occurs in the Pearl River Estuary.</description><subject>Ammonia</subject><subject>Ammonia-oxidizing bacteria</subject><subject>Ammonium</subject><subject>Ammonium compounds</subject><subject>Ammonium nitrogen</subject><subject>Anaerobic processes</subject><subject>Analysis</subject><subject>Bacteria</subject><subject>Brackishwater environment</subject><subject>Chemical analysis</subject><subject>Community composition</subject><subject>Community structure</subject><subject>Composition</subject><subject>Cores</subject><subject>Denitrification</subject><subject>Distribution</subject><subject>Earth and Environmental Science</subject><subject>Ecology</subject><subject>Ecotoxicology</subject><subject>Environment</subject><subject>Environmental factors</subject><subject>Environmental impact</subject><subject>Environmental Management</subject><subject>Estuaries</subject><subject>Estuarine dynamics</subject><subject>Estuarine environments</subject><subject>Fresh water</subject><subject>Freshwater</subject><subject>Gene sequencing</subject><subject>Inland water environment</subject><subject>Network analysis</subject><subject>Next-generation sequencing</subject><subject>Nitrate reduction</subject><subject>Nitrates</subject><subject>Organic carbon</subject><subject>Oxidation</subject><subject>Oxidation-reduction potential</subject><subject>Redox potential</subject><subject>Rivers</subject><subject>Salinity</subject><subject>Salinity effects</subject><subject>Salinity gradients</subject><subject>Seawater</subject><subject>Sediment</subject><subject>Sediments</subject><subject>Sediments (Geology)</subject><subject>Water analysis</subject><subject>Water 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of DNRA bacterial community composition in sediment cores of the Pearl River Estuary and the impact of environmental factors</title><author>Hu, Yaohao ; Hong, Yiguo ; Ye, Jiaqi ; Wu, Jiapeng ; Wang, Yu ; Ye, Fei ; Chang, Xiangyang ; Long, Aimin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c414t-c21d5acf379046c7bf294de1e6996d6613ce3cde9cbba89ec6d54dc1ed64ebc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Ammonia</topic><topic>Ammonia-oxidizing bacteria</topic><topic>Ammonium</topic><topic>Ammonium compounds</topic><topic>Ammonium nitrogen</topic><topic>Anaerobic processes</topic><topic>Analysis</topic><topic>Bacteria</topic><topic>Brackishwater environment</topic><topic>Chemical analysis</topic><topic>Community composition</topic><topic>Community 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Abstracts</collection><jtitle>Ecotoxicology (London)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Hu, Yaohao</au><au>Hong, Yiguo</au><au>Ye, Jiaqi</au><au>Wu, Jiapeng</au><au>Wang, Yu</au><au>Ye, Fei</au><au>Chang, Xiangyang</au><au>Long, Aimin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Shift of DNRA bacterial community composition in sediment cores of the Pearl River Estuary and the impact of environmental factors</atitle><jtitle>Ecotoxicology (London)</jtitle><stitle>Ecotoxicology</stitle><addtitle>Ecotoxicology</addtitle><date>2021-10-01</date><risdate>2021</risdate><volume>30</volume><issue>8</issue><spage>1689</spage><epage>1703</epage><pages>1689-1703</pages><issn>0963-9292</issn><eissn>1573-3017</eissn><abstract>Dissimilatory nitrate reduction to ammonia (DNRA) process, competing with denitrification and anaerobic ammonia oxidation (anammox) for nitrate, is an important nitrogen retention pathway in the environment. Previous studies on DNRA bacterial diversity and composition focused on the surface sediments in estuaries, but studies on the deep sediments are limited, and the linkage between DNRA community structure and complex estuarine environment remains unclear. In this study, through high-throughput sequencing of
nrfA
gene followed by high-resolution sample inference, we examined spatially and temporally the composition and diversity of DNRA bacteria along a salinity gradient in five sediment cores of the Pearl River Estuary (PRE). We found a higher diversity and richness of DNRA bacteria in sediments with lower organic carbon, where sea water intersects fresh water. Moreover, the DNRA bacterial communities had the specific spatially distribution coupling with their metabolic difference along the salinity gradient of the Pearl River Estuary, but no obvious difference along the sediment depth. The distribution of DNRA bacteria in the PRE was largely driven by various environmental factors, including salinity, Oxidation-Reduction Potential (ORP), ammonium, nitrate and C
org
/NO
3
−
. Furthermore, dominant DNRA bacteria were found to be the key populations of DNRA communities in the PRE sediments by network analysis. Collectively, our results showed that niche difference of DNRA bacteria indeed occurs in the Pearl River Estuary.</abstract><cop>New York</cop><pub>Springer US</pub><pmid>33411163</pmid><doi>10.1007/s10646-020-02321-1</doi><tpages>15</tpages><orcidid>https://orcid.org/0000-0002-6255-4100</orcidid></addata></record> |
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subjects | Ammonia Ammonia-oxidizing bacteria Ammonium Ammonium compounds Ammonium nitrogen Anaerobic processes Analysis Bacteria Brackishwater environment Chemical analysis Community composition Community structure Composition Cores Denitrification Distribution Earth and Environmental Science Ecology Ecotoxicology Environment Environmental factors Environmental impact Environmental Management Estuaries Estuarine dynamics Estuarine environments Fresh water Freshwater Gene sequencing Inland water environment Network analysis Next-generation sequencing Nitrate reduction Nitrates Organic carbon Oxidation Oxidation-reduction potential Redox potential Rivers Salinity Salinity effects Salinity gradients Seawater Sediment Sediments Sediments (Geology) Water analysis Water depth |
title | Shift of DNRA bacterial community composition in sediment cores of the Pearl River Estuary and the impact of environmental factors |
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