Spatial variability pattern of the anaerobic ammonia-oxidizing bacterial community across a salinity gradient from river to ocean
In natural habitats, the diversity of anaerobic ammonia-oxidizing (anammox) bacteria could be affected by multiple environmental variables. In this study, we investigated the distribution of the anammox bacterial community in surface sediment from the Dongjiang River (riverine sediment, DJ) to the P...
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| Veröffentlicht in: | Ecotoxicology (London) 2021-10, Vol.30 (8), p.1743-1753 |
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| creator | Li, Yiben Hong, Yiguo Wu, Jiapeng Wang, Yu Ye, Fei |
| description | In natural habitats, the diversity of anaerobic ammonia-oxidizing (anammox) bacteria could be affected by multiple environmental variables. In this study, we investigated the distribution of the anammox bacterial community in surface sediment from the Dongjiang River (riverine sediment, DJ) to the Pearl River Estuary (estuarine sediment, PRE) and then to the South China Sea (coastal sediment, SCS). The results revealed evident differences in the structural diversity of anammox bacteria in three different habitats.
Candidatus
Brocadia accounted for approximately 90% of the total anammox bacteria in DJ, conversely,
Ca
. Scalindua dominated in the SCS. Nevertheless,
Ca
. Scalindua,
Ca
. Brocadia and
Ca
. Kuenenia coexisted in the PRE. The qPCR results indicated that anammox bacterial 16S rRNA gene abundance ranged from 2.23 × 10
5
to 1.19 × 10
7
copies g
−1
of wet weight, but no significant correlation was found between the abundances and environmental variables (
p
> 0.05). The relative abundances of
Ca
. Brocadia gradually decreased with increasing salinity, and
Ca
. Scalindua showed the opposite trend, suggesting that salinity was a crucial factor in sculpturing the community composition of anammox bacteria in natural environments.
Ca
. Brocadia should be able to live in freshwater ecosystems, but it can also tolerate a certain level of salinity.
Ca
. Scalindua was halophilic anammox bacterium and exists only in saline environments.
Ca
. Kuenenia could adapt to a wide range of salinity and preferred to live in high DIN level conditions according to our search. The distribution pattern of anammox bacteria may be the result of microbial migration and long-term adaptation to salinity. |
| doi_str_mv | 10.1007/s10646-020-02282-5 |
| format | Article |
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Candidatus
Brocadia accounted for approximately 90% of the total anammox bacteria in DJ, conversely,
Ca
. Scalindua dominated in the SCS. Nevertheless,
Ca
. Scalindua,
Ca
. Brocadia and
Ca
. Kuenenia coexisted in the PRE. The qPCR results indicated that anammox bacterial 16S rRNA gene abundance ranged from 2.23 × 10
5
to 1.19 × 10
7
copies g
−1
of wet weight, but no significant correlation was found between the abundances and environmental variables (
p
> 0.05). The relative abundances of
Ca
. Brocadia gradually decreased with increasing salinity, and
Ca
. Scalindua showed the opposite trend, suggesting that salinity was a crucial factor in sculpturing the community composition of anammox bacteria in natural environments.
Ca
. Brocadia should be able to live in freshwater ecosystems, but it can also tolerate a certain level of salinity.
Ca
. Scalindua was halophilic anammox bacterium and exists only in saline environments.
Ca
. Kuenenia could adapt to a wide range of salinity and preferred to live in high DIN level conditions according to our search. The distribution pattern of anammox bacteria may be the result of microbial migration and long-term adaptation to salinity.</description><identifier>ISSN: 0963-9292</identifier><identifier>EISSN: 1573-3017</identifier><identifier>DOI: 10.1007/s10646-020-02282-5</identifier><identifier>PMID: 32951159</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Abundance ; Ammonia ; Ammonia-oxidizing bacteria ; Aquatic ecosystems ; Bacteria ; Brackishwater environment ; Community composition ; Distribution ; Distribution patterns ; Earth and Environmental Science ; Ecology ; Ecotoxicology ; Environment ; Environmental Management ; Environmental Sciences ; Environmental Sciences & Ecology ; Estuaries ; Estuarine dynamics ; Freshwater ; Freshwater ecosystems ; Inland water environment ; Life Sciences & Biomedicine ; Microorganisms ; Natural environment ; Oxidation ; Rivers ; RNA ; rRNA 16S ; S.I. : Commemorative Special Issue for Shu-Pei Cheng ; Saline environments ; Salinity ; Salinity effects ; Salinity gradients ; Science & Technology ; Sediment ; Sediments ; Sediments (Geology) ; Spatial variations ; Toxicology ; Wet weight</subject><ispartof>Ecotoxicology (London), 2021-10, Vol.30 (8), p.1743-1753</ispartof><rights>Springer Science+Business Media, LLC, part of Springer Nature 2020</rights><rights>COPYRIGHT 2021 Springer</rights><rights>Springer Science+Business Media, LLC, part of Springer Nature 2020.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>true</woscitedreferencessubscribed><woscitedreferencescount>10</woscitedreferencescount><woscitedreferencesoriginalsourcerecordid>wos000571286800001</woscitedreferencesoriginalsourcerecordid><citedby>FETCH-LOGICAL-c391t-f22b7caed022a7830db2865bbf651f4a042e3bc2b348719e2bff21291a1944703</citedby><cites>FETCH-LOGICAL-c391t-f22b7caed022a7830db2865bbf651f4a042e3bc2b348719e2bff21291a1944703</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10646-020-02282-5$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10646-020-02282-5$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>315,782,786,27931,27932,39265,41495,42564,51326</link.rule.ids></links><search><creatorcontrib>Li, Yiben</creatorcontrib><creatorcontrib>Hong, Yiguo</creatorcontrib><creatorcontrib>Wu, Jiapeng</creatorcontrib><creatorcontrib>Wang, Yu</creatorcontrib><creatorcontrib>Ye, Fei</creatorcontrib><title>Spatial variability pattern of the anaerobic ammonia-oxidizing bacterial community across a salinity gradient from river to ocean</title><title>Ecotoxicology (London)</title><addtitle>Ecotoxicology</addtitle><addtitle>ECOTOXICOLOGY</addtitle><description>In natural habitats, the diversity of anaerobic ammonia-oxidizing (anammox) bacteria could be affected by multiple environmental variables. In this study, we investigated the distribution of the anammox bacterial community in surface sediment from the Dongjiang River (riverine sediment, DJ) to the Pearl River Estuary (estuarine sediment, PRE) and then to the South China Sea (coastal sediment, SCS). The results revealed evident differences in the structural diversity of anammox bacteria in three different habitats.
Candidatus
Brocadia accounted for approximately 90% of the total anammox bacteria in DJ, conversely,
Ca
. Scalindua dominated in the SCS. Nevertheless,
Ca
. Scalindua,
Ca
. Brocadia and
Ca
. Kuenenia coexisted in the PRE. The qPCR results indicated that anammox bacterial 16S rRNA gene abundance ranged from 2.23 × 10
5
to 1.19 × 10
7
copies g
−1
of wet weight, but no significant correlation was found between the abundances and environmental variables (
p
> 0.05). The relative abundances of
Ca
. Brocadia gradually decreased with increasing salinity, and
Ca
. Scalindua showed the opposite trend, suggesting that salinity was a crucial factor in sculpturing the community composition of anammox bacteria in natural environments.
Ca
. Brocadia should be able to live in freshwater ecosystems, but it can also tolerate a certain level of salinity.
Ca
. Scalindua was halophilic anammox bacterium and exists only in saline environments.
Ca
. Kuenenia could adapt to a wide range of salinity and preferred to live in high DIN level conditions according to our search. The distribution pattern of anammox bacteria may be the result of microbial migration and long-term adaptation to salinity.</description><subject>Abundance</subject><subject>Ammonia</subject><subject>Ammonia-oxidizing bacteria</subject><subject>Aquatic ecosystems</subject><subject>Bacteria</subject><subject>Brackishwater environment</subject><subject>Community composition</subject><subject>Distribution</subject><subject>Distribution patterns</subject><subject>Earth and Environmental Science</subject><subject>Ecology</subject><subject>Ecotoxicology</subject><subject>Environment</subject><subject>Environmental Management</subject><subject>Environmental Sciences</subject><subject>Environmental Sciences & Ecology</subject><subject>Estuaries</subject><subject>Estuarine dynamics</subject><subject>Freshwater</subject><subject>Freshwater ecosystems</subject><subject>Inland water environment</subject><subject>Life Sciences & Biomedicine</subject><subject>Microorganisms</subject><subject>Natural environment</subject><subject>Oxidation</subject><subject>Rivers</subject><subject>RNA</subject><subject>rRNA 16S</subject><subject>S.I. : Commemorative Special Issue for Shu-Pei Cheng</subject><subject>Saline environments</subject><subject>Salinity</subject><subject>Salinity effects</subject><subject>Salinity gradients</subject><subject>Science & Technology</subject><subject>Sediment</subject><subject>Sediments</subject><subject>Sediments (Geology)</subject><subject>Spatial variations</subject><subject>Toxicology</subject><subject>Wet 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variability pattern of the anaerobic ammonia-oxidizing bacterial community across a salinity gradient from river to ocean</title><author>Li, Yiben ; Hong, Yiguo ; Wu, Jiapeng ; Wang, Yu ; Ye, Fei</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c391t-f22b7caed022a7830db2865bbf651f4a042e3bc2b348719e2bff21291a1944703</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Abundance</topic><topic>Ammonia</topic><topic>Ammonia-oxidizing bacteria</topic><topic>Aquatic ecosystems</topic><topic>Bacteria</topic><topic>Brackishwater environment</topic><topic>Community composition</topic><topic>Distribution</topic><topic>Distribution patterns</topic><topic>Earth and Environmental Science</topic><topic>Ecology</topic><topic>Ecotoxicology</topic><topic>Environment</topic><topic>Environmental Management</topic><topic>Environmental Sciences</topic><topic>Environmental Sciences & 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Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Engineering Database</collection><collection>Environmental Science Database</collection><collection>Earth, Atmospheric & Aquatic Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Engineering Collection</collection><collection>Environmental Science Collection</collection><collection>ProQuest Central Basic</collection><collection>Environment Abstracts</collection><jtitle>Ecotoxicology (London)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Yiben</au><au>Hong, Yiguo</au><au>Wu, Jiapeng</au><au>Wang, Yu</au><au>Ye, Fei</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Spatial variability pattern of the anaerobic ammonia-oxidizing bacterial community across a salinity gradient from river to ocean</atitle><jtitle>Ecotoxicology (London)</jtitle><stitle>Ecotoxicology</stitle><stitle>ECOTOXICOLOGY</stitle><date>2021-10-01</date><risdate>2021</risdate><volume>30</volume><issue>8</issue><spage>1743</spage><epage>1753</epage><pages>1743-1753</pages><issn>0963-9292</issn><eissn>1573-3017</eissn><abstract>In natural habitats, the diversity of anaerobic ammonia-oxidizing (anammox) bacteria could be affected by multiple environmental variables. In this study, we investigated the distribution of the anammox bacterial community in surface sediment from the Dongjiang River (riverine sediment, DJ) to the Pearl River Estuary (estuarine sediment, PRE) and then to the South China Sea (coastal sediment, SCS). The results revealed evident differences in the structural diversity of anammox bacteria in three different habitats.
Candidatus
Brocadia accounted for approximately 90% of the total anammox bacteria in DJ, conversely,
Ca
. Scalindua dominated in the SCS. Nevertheless,
Ca
. Scalindua,
Ca
. Brocadia and
Ca
. Kuenenia coexisted in the PRE. The qPCR results indicated that anammox bacterial 16S rRNA gene abundance ranged from 2.23 × 10
5
to 1.19 × 10
7
copies g
−1
of wet weight, but no significant correlation was found between the abundances and environmental variables (
p
> 0.05). The relative abundances of
Ca
. Brocadia gradually decreased with increasing salinity, and
Ca
. Scalindua showed the opposite trend, suggesting that salinity was a crucial factor in sculpturing the community composition of anammox bacteria in natural environments.
Ca
. Brocadia should be able to live in freshwater ecosystems, but it can also tolerate a certain level of salinity.
Ca
. Scalindua was halophilic anammox bacterium and exists only in saline environments.
Ca
. Kuenenia could adapt to a wide range of salinity and preferred to live in high DIN level conditions according to our search. The distribution pattern of anammox bacteria may be the result of microbial migration and long-term adaptation to salinity.</abstract><cop>New York</cop><pub>Springer US</pub><pmid>32951159</pmid><doi>10.1007/s10646-020-02282-5</doi><tpages>11</tpages></addata></record> |
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| source | SpringerNature Journals; Web of Science - Science Citation Index Expanded - 2021<img src="https://exlibris-pub.s3.amazonaws.com/fromwos-v2.jpg" /> |
| subjects | Abundance Ammonia Ammonia-oxidizing bacteria Aquatic ecosystems Bacteria Brackishwater environment Community composition Distribution Distribution patterns Earth and Environmental Science Ecology Ecotoxicology Environment Environmental Management Environmental Sciences Environmental Sciences & Ecology Estuaries Estuarine dynamics Freshwater Freshwater ecosystems Inland water environment Life Sciences & Biomedicine Microorganisms Natural environment Oxidation Rivers RNA rRNA 16S S.I. : Commemorative Special Issue for Shu-Pei Cheng Saline environments Salinity Salinity effects Salinity gradients Science & Technology Sediment Sediments Sediments (Geology) Spatial variations Toxicology Wet weight |
| title | Spatial variability pattern of the anaerobic ammonia-oxidizing bacterial community across a salinity gradient from river to ocean |
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